morexGenes - Barley RNA-seq Database

Contig contig_308898

Source Contig contig_308898

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_308898 (759 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_308898

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_47606	1	530 bp	MLOC_47606.1	Available	Available	LOC_Os02g15710.1, FRAME:+3, EVALUE:1e-48, 13102.m01752 protein plastocyanin-like domain containing protein, putative

CDS Structure of MLOC_47606

Contig Sequence (759 bp)

>contig_308898 759 assembly3_WGSMorex_rbca.fasta
TGAGCACATTAAAAGAATGATCTTAGCTCGCCGCTTTAAAAGCCTATATATATCATACAA
GAAGGAGATCAAACACAAATCATCACTTGAGGTATCGACTATTGTTTCCTTTTGTTGTTC
TTGTGATCTTCGGTTGCGAGAAGAAGTCAAGGGAAACACGTTCAATGGCACGGGGAACCA
TCGTACCCACCCTTCTAGTGTTTCTTCTGGCCGTTTGCTGTGCAACCTCCGTTGTGCATG
GCAAAGAGTGGACAGTCGGTGACAACAAGGGATGGAGCTTCGGCGTCTCCGGTTGGGAGA
ATGGCAAGCGCATCCAGTCCGGCGACGTGCTTGGTGAGAACTCTAAAGATCAAATGATTA
GATATACTTGAAGTATATATATGAATGAATATATGTTCTGATCTGTATTCTTGTGTTAAC
TGATGCACATAGTGTTCAAGTACAACCCGAGTATGCACAACGTGGTGCAGGTGGGAGAAG
CCGACTACAACTCATGTACGGTTTCTGGCCCGTCGAGGGCTTACACCTCCGGCAATGACC
ACATCCAGCTTGCCCGCGGTGGCAAAGCATTCTTCCTCTGCAGCGTTCCGGGCCACTGCC
AGAAGGGCATGAAGATCGCTGTCACTGCTTAATTGATCTCGCGCATATGTGTGTCTATGT
ATTTTTACTTTGTACCAAATCTTTATGGTATACTATCCCATGATAAATTGGTGATAGAAG
AAATCAATTGATCCTACTTGTGTGTCTGCATCATATTTT