morexGenes - Barley RNA-seq Database

Contig contig_307649

Source Contig contig_307649

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_307649 (4250 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_307649

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_47532	2	1609 bp	MLOC_47532.2	Available	Available	LOC_Os01g08330.1, FRAME:-1, EVALUE:4e-144, 13101.m00870 protein aspartic proteinase nepenthesin-1 precursor, putative
MLOC_47533	1	288 bp	MLOC_47533.1	Available	Available	LOC_Os02g52960.1, FRAME:+3, EVALUE:3e-11, 13102.m06040 protein PHD-finger domain containing protein, putative, expressed

CDS Structure of MLOC_47532

CDS Structure of MLOC_47533

Contig Sequence (4250 bp)

>contig_307649 4250 assembly3_WGSMorex_rbca.fasta
GCAGCGCGCTCCTCGAAATCTTCCGGTGTACGTTGCTGCGATCAGGAACAGGAACCTGCA
GCTCCCTGAGAACCCTAACGAGCTATACGAGATCAGCAGAAGCAAAGCTGCTCCTGAGGT
GGAGTTCGTGTCCCACAGGGACATGCCATTCAGGTTACGTTCATATTCATTTCCTTCTGC
TGGTGTGTGTGGTGCCTACATGCAAATGCAACGATGTTTACTGAACAAGTGTATATGCTC
AGGTTCCTGGATAGGGCGGCGATCGTTCAGGCACCGACGGCGGAGACGCCGAGCCCGTGG
CGGCAGTGCCGGGTGACACACGTGGAGCACGCCAAGACGGTGTTGGCCATGGTGCCAATC
TTCTGTAGCGCCATCATCATGGGCACCTGCCTGGCCCAGTTCCAATACCTTCTCCATCCA
GCAGGGCTCCACCATGAACACGTGGGTCGGGAGCTTCCAGATGCAGCCGGCGACGCTGCC
CATCATACCGCTGGGCATGCTCATCTTGGTCATGCCCATCTACGAGCACCTCTTCGTGCC
CTTCGCCCGCGGCGTCACGGGCCACCCCAACGGCATCCCCTACCTGCAGCGCGTCGGGGT
CGGCGTCGTGCTCTCCATCGTTTCCATGTGCATCGCCGTCATCGTGGAGATGTACCGCAA
GAAGGTGGCCGTCTAGAACGGCATGCTGGACGCGATCCCCATGGTGCGCCCGTTGCCCAT
GTCCGTCTTCTGGCTGGCCCCGCAGTAAGGCGTGTTCGGCATCGCTGACATGTTCACCTA
CATCGGCCTGCTCGAGTTCTTCTACTCGCAGGTGCCGTCCGCGCTCAAGTCCATGTCCAC
CTACACCGGCCTGCTCGTTGACCTCTTCTTCTGGCTGCTCGCCGTGCTCAGCTTCATCAA
CTTCCTCAACTATCTCTACTGGGCCAGCTGGTACAAGTACGTCAAGCCCCAGGACGAGGA
CGAGAATGTCGACGAGCAGCAAGTGTGACCAGTACTCGTATCTCTACCCGACGAGCTCGA
CGCACCCGCAGCGCCGCCGCCGGTCGCCTCCCGCATCGGGAAACAGGTCAACGAAGGCAG
GCAGGGACGTCCCCAACTGATTAGCACAGGGAACAGGGTTTTTTGTGCAAAAATAACCCC
ACACGTGTGCCTCGCGTGACCTCGAACGAAGAAAACCGGGCAGCCAACCGGTCCAAATGA
AGGTTGTGACCTAGATAAGCCCGCAACGCAAGTTCTGTGACGGGTTTTTCGGTTTGCAAG
TAGTGGGACTTAAGTGCACCCGCAACACAAGTTCTCATACCGCCAGCGCCTTTTACTCGG
AACGGAGGGTATATATGTCAAAATTCGTGTTTATAGTATTTTGTTTCACAATGTTGATGC
ATTCAACGTCAAGCAAATAGATACCCCTTCTGAATTAGTACTTCCTCCGTTTTTAAATAT
AAGTTTTTTTATTGATTTCATTATTGAACTACATACGAATATATATAGACATATTTTAGA
GTATGGATTCACTCATTTTGTTTCGTATGTAATTCCTATTAAAATGTCTAAAAAAACTTA
TATTTAAGAACGGATGGAGAATTATTTTTTGCATTGTCATCAATCTATAAGCATTTTTTC
GTAAGTGTAGCATTCTTAGTTTTGTCTTACGTCAAACTTTGTAAACCTTGATCATCAATA
TCATTAGATTTATTATTAATATATATTTTCATATCGTTGATCAAACTTTATAAAGTTTGA
TTCAGCATAATAACAGAGGGAATGCCAACTGTAATATATACCAGCTGGGCAATGGTGATG
CGATATGTAGCTACACAGAGGCGGAGGGTGAGGGGGCGGGGTAGGAACTCGCGCAGGCTG
CTGGGGCGAAGGTCACGGTGCCCTTGTCGAGGTCGTACCCAACGTGCATGTTCTGCTGGG
CGATGTTCCCGATGATCGACGCCGGAAACTGCTCCGACATCGCCGACACCGCCAAGCACA
GCGTCCCCTCCTGCACCTCCACGAACGTGTTCTCCGCCTTCAGCGTGACCGCAGCGCCGC
CGCCCAGCCCCACCGTCACGTCAGGGATCATGGCCGCAACCTGCCCCTCCCGCACCCCGC
TCACGTCGAAGCAGAGCGGCAGGAGCCTTTCTAGCGACTGCGCGGGCGGGAGCTTGATCC
GCCCGGTCAGCTCCTTCACCAGCGGGTCTACAAGCGCCTCCGGGAGGAATGTGAGCGTCG
TGCCGGAGTCGACGATGAGGGGGGACCGGTCCGGCGCCTCGAAGGTCTTGTTCCCGACCT
TGACGGACCGGAGCTCGACGATGTAGTATGCCTTCACTTGGGATGGGATCAGCGGCGTCG
TCACCGCGCCCGGGTCGGTGACGGCGGCGCGGGGGCCGAAGTTGAGCGCGGAGGAGGCCT
TGACGGAGTAGGGCACGAGGCAGTAGGAGAACCTCCGGCCCAGCGAGGTGTCTGCGCCGA
GCTGACTGACGAGGGAGAGGTCGCCGCCGCCGAGGCCGACGAGGCCGTCCCCGACGGACG
AGCCGACGAAGGTCGTGGAGCAGCCGAAGTTGACGTTGGCCACGCGCGTCGTCGTCCCAT
CGCCGCGGGCGCCCGGGGCGTCGGCGAAGGTGAAGGTCTCTGTGGAGAGGACGCCGCTCG
TGTGGGAGCCGTCGCCGTAGGAGTATGAGTACCTGCACTTGGAGTCGGCGCCGCAGGATG
CTTCGGGCAGCTCGCTGCACGCGACGGAGTCGCAGTCCACGAGGCGGAACGTCGTCGATT
TGGAGGGGTCGAACTGGACGCCCGGCGGCTGCGCGTCCGCGTCACGGGCGGCCGCCAGAC
CGGGGCCGTCGCCTCCGTAGCTGCAGTTGAGCCAGATGAGGTCGCTGCCGGTGTCGGCGA
TGGCGACCATCCTGGTGGGCGGCGTGCCTATGTTCACAGCCATCAGGTACTCGAACGGCG
TGGACGTGAGCTCGGACACGAAGCCGTCAGCCGATGGCGCGTCGACGCGGACGTAGGAGC
GCGAGAGCGCCGCGGCGCGTACCGTGGAGCGCCGAGCGGCCTCCAGCACGCGGGCGGGCG
CGGTGAGCGAAGGGTCGTGGAACGGCGACCTGGCCGAGTCACGGTGGATGAACTCCACGC
TAAACCCATCGCCGCCGCTGCCGACGTACGCCGTGCACGCGCACAGCTGCGCCGTCAGGA
CGACGCCGACGAGCAGGAGAGCGCGGGATACCATCGTCCCAGGCATTGTGTCCTAGCTTA
AATCCCAAGGATCAGCTCTACTGGGGTTTGCTTTGCTGCTGCTGCTGCGATGCAGAGGGC
AGTATTAATAGGCGAATTTGCGTGAGATTATAGTGGTAGATGGTTAATGGGGAGACGAAT
GTGGTAAGCCGTCACATGATTTGAAGTCATGAGCTGCTGAGTGCCATTTGGCAGCTCGCT
GCGTTATGGTAATTACGTGCTGCACTACGCATGGAATCAAGGTACGTACGTAGATCGTGC
GGTTTCCACTGCTCTTTTTGCGTATGAAACTGAAGGCTTTTGAAGGCGGCCACTAATTCG
TGGCAAGAGATGACGATGAGTAATTAGCAATTGCCAATCTTGTAGCCAATCTTGTAGAAG
AAGTATTATCTCCGGAAGGTGGGCCACTCGAGTGGCAAGAAGAGGAAGTGATCGATTGCT
TGGTGCAACCGGCCACCCTGGAAAACTGTAGTGATTGATCTCCCGTTTGAGCTTCCTTTT
ATCTACGTCTCGCTCTTCATGCCGGGCTCATTCGGTGATTCCATTCAATTTCATTCCGCA
GTTTTTCTGCAGCAAATATGCATTCCGTTACACTTTTTTTAGCTACTGGTACAAATGCCC
GTGCGTTGCATCGGGCTAGAAAAAAAATGTAAAACCTACTTGAATTATTACAAAAGGATT
TTTTATTACAAAATCATGCGCCCCTCCCCCGCACGCCCGCCCGCCCGGGGCATGGCCGGC
GTCGACCCCTTCGAGCAGGCCAGGAAGGCGATGTCCCTGCGGACCCGTTCGAGGGCGAGG
AGACGGCGTCCAGGGCGCCCACCCTGCCCGCGCGCCTCGTCAGCTGGTCGGGCCCCAGCG
ACCGGCGCAAGAAGCACAAGAAGCTCGAGCTGGGGCGAGCGGCGCGAGCAGGCCAGTGGC
GCGGCGAGCGGGGGAGGAGGTACGGCGCGGCGAGCGGGCCGACCAGGAGGAGGCGGGTGA
GAGTGCGAGCGAGGCATTGATTGACCGCGAGACGTGGGGCAATTAGCGCT