morexGenes - Barley RNA-seq Database

Contig contig_306531
Source Contig contig_306531
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_306531 (6902 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_306531

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_47469	3	4585 bp	MLOC_47469.1	Available	Available	LOC_Os01g05500.2, FRAME:-1, EVALUE:0.0, 13101.m00525 protein zinc finger protein, putative, expressed
CDS Structure of MLOC_47469

Contig Sequence (6902 bp)

>contig_306531 6902 assembly3_WGSMorex_rbca.fasta
CAAAACCGAGTCTCCTGATATATCTTCAAGAAACAAAAGAAGTAAAGTTGCTGCACTGAG
ATCGTAGATTCAATCAAGAGAAGTGTGAGAAGCCATCATAAGACAATCACTAATGCAGGC
TCCATTGGGTCAATGCATTTTGGATGGTCTGAATTGGTTGGATCAAACTCATGCTTATTA
TATTTGTATTTGTATGGATAACTGTGAGATGCCAATTCAAACAGAAAATTACTCAAAGGT
ACAATATGGAATAGTGTAACCTATTTGAACTTGATAAGAATGAATTCAAGGGATTTGAAT
GGAAACCATGCAGCATACCTTTGTTTCAAGGAAAACAAATATCGATCATGACATTCTTGA
TGTACAGCATGTCCACAAGAAGAGATGTGGATGCCATCACAATCAACAGGACCAAATCTG
TTTCTTATTGTTACAGGGGCAGAAGATTTGGAGGCTACATCACAGAAAGAAGAAAGACGG
TATTTCGTTGAAAGACAAGTAACATACGTTCCCAGAACAGAACTTTTAGGGCTTGTGCTT
GTCTTGGAGCCAGCTGTGACATTTGAAGTAGACAAACTCTGCTCAGCATCTTGAATGCCA
TCCAGATCATTTACGATAGACTTGTATACATCAGCCTCAATTGTCTCAAGAGAGATATTG
TCATCTGCATTGCCAGCACAGCGTCCACTTGGGAAACATGATATATATCTAATCAGTGGA
TGTTGCTCATTTGAGAAATCAAGAAATGCATCAACTTCCATGCTGTCTAATTCGAAGGAA
GGTTCTATAGTTGTATCCCTGACAAGCTCCTCTGAACTAGAAGACCCAGCACCTGAAGAA
TCAGTTGATTTTTCCCGTCTGAAGGACCCAGATGTCTTCTTTGATTGACTCAAATTATCC
CAGGAAGGATTGCCCATTTCAACAAAAGTTGCAAGCCGAGATTTCTAGATTATAGAACAA
GTAAGAATACAATACCAACACGTAACATAACAGAAAATTTGTAGCTAGTCCAATTGCCAT
GCTCTTGAACATGGGACAGAGAAAGGTACTTTATGTTGACAAATTACTACAGAAAAAAAG
AATCACCATTGTCAAGTCAAGGATTATTACCTGAAGAAGAATCAAATAGCAGAGTGGACT
TTTGGAATCCGAATCCCGGCATAGAGAGCAAACTGGCCGTGACTCTTCAGAGGCAATGGC
GGTTGAACTGGATGCATCTGGCTCAAATGTTGGAGCAGTAAGCCCTTCATTTTCTGATGC
CTTCATACTTTCAGCAAATTTTGACTGCTCTGCTTTCATTTTTGCCTAAGACATACAGAT
TATGTGCGCCCATGTTTTGTAAGTCCATCAAAACAAAAAACTTTTATTTGACGAAAGCTG
GAATTCAAGATGCCTTGAGAATATATAGTGAACTTTTTAAATGAAGTATTTACCATGATT
GCAGCTTGGCGTTGGCGCGCTTTTGCTTTCTTGTCCATCAAATCTGGAGATCCTGAATTT
TGTATAGTGCTAGCATGATCCGGAATAGATGGAACTACTTGCGGTGCCATTTGTCTCAAG
GCAGACATGCACTGCTTACTTAACTTGGCAAATCTTTTTAACAAACTCTCAACTAGAGAT
GGAACATTGCAGTACTTGGATCCAGAAAAAGTGCTGTCATTCTCTTCCTTGTACTTGCGC
ATGAGTGAAACAAGCAAGGTTAGCATGCTCTCGTTCTTTACTCCGTCAGAGTCCGGAGAG
ACTGATTCAGTAGAGTAGGTCAATATGGGAAAAGCCTCTTCTGCATACGATGACAGGACA
ACCCACGATTCAGCATCATGCTGCACTATGTCCATCCCATATTTGTCCGCATACATTTGA
CTCTCGGATTCACATATGTCAAGTGCCAACGAAAGCAGGTGCAAACCCATCACCAGAACA
TTGTCCGGGGCACGTGATACCGATGATGCGTCCGTGTAAACAGCATAGAAGAGAACAGCA
CGAACAATTTGAAGGACAGCTTTGGAGGTGGCAATTTTAGAAATACTGCGCAGAGGGCTA
AAAACATGAGTCCACTGAGGTAGTTGAGCGTTAAGAGCAGAAACTTTGCAAAAACGGTAA
TATCTCTCTTCAGCAATCTGTATTTCTCTGGAATTCCAGCGCGGGTGATACAAGTCCAAC
TCCTTCCAGAATGCTTTGCGAAGCACATACTTGCCCTGTGATACTTTTTCTTATTAGTCA
TGCATTCAAATGTAAAGGAATTTGCTGAAACATGTTACACAATTTCAAAGATTAGAACCT
GTTTCATTCCAGATGGATTAGAGTAAACTGCAAGTGAATCTAGAACACTTTGAAGTTGGT
CACTTGATGAAAGGTCCCTGGGAAGAGACTTCACAATCTGGCTATGGGTGGCATCCCCAA
CAGCCAATTTATAAATCAATTCTCTCTTCAAGTTGTCTGCTGTTGAACGCCCAATGAATC
TGCGTTCTTTGACTAGTTGTATAAGAAATATTAGCATTTCTTGCATCAGAACTGGCTCAT
ATCTGAAAAGACATAAAAAAAATCTTCAACATTTAACAAAAATGTCCAAGCAAACTATTA
ATCTGGATATGATGAAAACACGGACTGTTGTGTCATCATATGATAAACAAAAAAAAGTTG
ACCCGAACATCACTCAAATGCGCAACTAAAAAAGAGTTTTACCTATGTCACAGCATGACA
AGCTGTGTACTTCCCACCATCACAAAAGAACAATCAAATGGAATGGATAACGACTATAGC
TTAGTGGTAATGACAGAGAAAATAGATCGATGAAGATAAAACTGAGCACACTCCACAAGA
CCAGAATATAGAATAAAGAACAATACATGGTTAAACAAGAAGTATGTTGATGAATGCATG
GTGAGAAGTCATTTTTAACTTATGTGATCAATGAAACCTTCGTTTCACAAGTAGTGACAA
ACAAGAAAGCAGTTGACTGGATTATCAAAACAAAAGTACATACATGTACCACCCAAAATT
GAAGGAAGCAATATGTCAAAACAAAACAACTTGGGCTTACTCATTCTGTTCCGTGAGAAC
CAGAGATATATAATTCGACAAAGCAAATCTTTCTTGAATGGTCTTCACAAAGAACTCTGG
AGAAGATAATGCAGCACAGCATTGCAGCAGAAACAGATCCGACTCCAAGCCCTGTTCAAG
CCTGGAAAGACGGGTGACAATATAACTTCAGGACTGTTAGTTGAATAGCAATTTATTTGA
GGTGAGAAAGAAATTACCACTGCACGGAGCGGTACCACTCAGCACTCAGTATAGCTGCAT
CTCCGTTCTTGCGCCACATTCCAGCACGCACTTGTGCGCAAAATACTCTCACTCTTAAAG
GATGCTCCATCACAACTGAAGCAAACCCATAAGGCTCGTAACCTTTAAGTACCTGAGAGA
AGAACTCATTGGACTGCACAACTGAAGATTCCTCTGGTTTGGCATCCTCTCCGAAACATT
TCTTCATTGCTTTACGCAATAGTAAAGAAAGCATACGGTGTAATGGGATATGAAAAGATG
TTTCTTGTGAACCGACATCAAAGACGACACGAGGCCAGCTGGTCATGTTGAGTATTCCTA
GTTCATCAATTCTTGAATCTGGGTGAGCATATAAAAGGCTGCCGTCTGTCAGAGCAACAG
AAATAGAATTTTCAGAGTGTAATTGTACATCTGATCCATTGCTACTTTCTTGCATCTTTC
CCTTGCCTGAGTCATTTCCAGCTTGAGGCGTCTCTCCTTGATCTATCAGCATCATGTTGT
CGGATTCTTGGGAAGGAGAACCAACTATATCATGATAATCTGCAGCATCGTCTATTTGGG
ATCCTTCATTCACCGTCATGCCGACCGCACCAATCTGTTTACTTGATCCACCTTTGTTAA
TAGTCAAAGTGTCTTCAAGCAAAGCAAGAAAATTGCGAGCATCAGTGCTGCTAGCATCAA
GGGATGACAACTTTCTCCTCCGGGGACCAGGTTCCAGCCAGGTTTCAATAGCTTTCAAGC
ACTGACGAATTAAACAGATAGCAGGTGCTGGTAATTCACTGCTTGATGAACTCTCTCTGG
TACTTAAACTGCATACCAAGTTCTCCTGGGAGACCCTTCCAACTTTAGCATGACGCTGAT
TCTCGGCACTTTCCATGCCTTTTATCGCAGTGGAGCATACAGTAACATCAGTTGACTCTT
GTTGCCCAGGAGAAGAAAAGGCTCCCTTTATCAAAAGATTCTGAATGATCCCAATATAAT
GTCCTAGCATGAAAGGCGAAGATAGATTCTCATTCTCATCTTCAACATGAATACTTGTCA
CTCTCTTCTGAGGATCCATTCCTTGCACAAGTGACAACAGCTTAATCCATGACCTTGATA
GATCAGGCCTCTCATAAGCAACATACTTGGAAACCTCCTCATGGCTCACAACATAGCGTG
TATCTTCCAATAATCTAAGAGAAGAATCATACAAATTTCCCCATTTGCTTGTCTGCAAAT
AACAAGGTGAAAATATTCCTGTGACCATATGAAATCACATTACACTGTACAAATAACAAT
AGTTTAAGTTGCTCTATACATCACGGCAGAACACCAAAGTGAAACAAAAATCTTTCTGGG
ATCTGTTAGCATATATTGTGAGCACACATTTATCAAAAAAGGGACAGACCCAGTGCATAG
AAGCTCCCACACAAGGTGGGGTCTGGGAAGGGATTATAGGAGCCTAGTCTTACACCTGCT
ACAGTGCAATGCAGAGAGGCTGGTTCGAACAAAAACCAACAAAAATATTGTCCTGGAGTG
TTTTAATATATTTCTGTTAAACGTTGATCATCCATCCCCAGTAATCCAAGTATGTTGTCA
TGCTGATGTTTATGACAAGCCAACATTCAGGGCATATAACCTTGCTACTGACTTCTATAA
GTCTTATATACAATTAACAGATAAAAAAATATGTTCAGCTTAAATTGTCATAGGAATGGA
TGTATCTAGAACTAAAATACATCGAGATACATCCATTCTTATCCATTTGTGCAACAAGTA
ATTCCAGACGGAGGGAGTAGCAGTTATGCTTGGAAAGTAATAATATCCCATAAGTGTACA
GTGACTGGGTAAAGCATACGCATCTAATTTTTCGAGCAATGGAAAGAAGCCAAGCATACC
TGTAAATGACCATCCTCACCAACGCAAGAAAGAAATAGAACCGTCAAACATTCAAGAAGA
ATACCCAACAAATTGTGCTCCCGCACAAGCCTTGTAGTCAGTGTAGGCACCGTAAATATT
TGGACAGAAAAGGTCGGTATCAGTCGATACTCGTCCAGCAGATTATCATTGTTCCCTTTA
ATAACTTCAGAAAATGTACCAGGGTAGTACTGTATGAAAACTTTGGCAAACTCGTACTTA
AAAGCTGGTTCAGTGATAAGCTTCAATAGCAGCTCGTGCAAATTTTTCAGAACTTCCTTG
TCCAGCAACCTTTCCGCCCTCGTCAATGCATCCAAGAGATTTGGGGACTCACGGATCCTT
TGGGACACAAAGCTAAGAAGACTTTCACTAGAGGTGCAGAAGCGAAGCAGCATGTCAGCA
ATAGAAGTCGTCAACCCCTCAGCAACACTCTTGCAGGAGCTATCCTCGTCAGACTTGTGA
GTTGGGGCTTCCACCAGGCATATCCTCTCCTTCCAGAACAGCAAGAGCTCATCCAGCACA
GGCCCCACAGACCTTGCAAGCTCCTCGGGAAGAGGCTTAATCTGTTCGGCCCCCTTGTGC
CTGGAGCAGAACCCTTCACGCTTCCAGGCAGTAGCATCGCCGCAGTCACAACATCCACCA
CCTGTATACATGATGGAGTAATCATGATCCTCGTGGTTACCATTCTGGAAGCATGGAACA
CAGATGGCGCACGTGGAGTCGTTTTCACAGGTCCGGCAGCGGTAAGCGAGGTCGTTCTGC
CCCCAGACAGAGCCGCAGACAGCACGCTCTCCCGCGCTGCTCTGCTCCATGTCATCAAGC
ACCCCATCCGGCTCGTTGCGGAACATCATCCACTGCAACCACGACAAGCTCTCGCTGTAC
GCGTCGCTGCCGCTGCTGCCGCCGCCGTCTTCATCCTTCTTCGAGGACTTGCGGGCCTCG
GATATATCGGTGCCTGCTGACAAGATGGCCGCCGTGACCTCAGAAACCTTGTGGGGGTGC
TCCTCCAAGTAGATGAGCAGGCCTTCCTGATGGTCCTCCCGCAGGTGCTCTTCTGGAACT
CCACAGGCAATCAGCTTCTGCAGGGAGGGAACACAATGCCACTACATTAGCAAAGTTGTA
GGATTTACCTTACTGAATCATTATTGACACTTCTCATACGCGTCTCGGATCAGTGCATCG
AGAGGGGAGAGGTACAGTTGGCTCTTACAAGCAGGTAAAAACCAATTTGTGTTGTTCGAA
AACTAAAATTCTGAATGCCCTACCACATCGGCCGGCCAAGTAAACACGGCCATGGATTCC
ACGGACGCGAATCGCGCTGGCTATGGAACCCGCTCGGCTCTCGCCCAACGACGGGACCGA
GCAAGCAATCCCCGTCCCCGCGGCAGAAGGGAAGGACAGGGGAGCGCCGCCACGGGTGGT
TGGATTAGATCAGAGGAGAGTAGAGGAGGGGAGACGCACCTGCTGGACGCGCTCGGCGGG
AGTCAACTCGGGCAGCCGCGCGGCGGGGGCGTCCCCGGCGCCGTCGATCCCGGCCATGGC
CCGCAGCCAGTGGGCGCAGGTCCAGTGGCCCGACCGCCCGCCCCCACGCCCCAGCCTCGC
CGAATCGGGGCCCCCTCCGGAACCCGCAGGCCCTCCCTCCCTCAATCCGCGCACGCGCGC
GCGGCGCGGAGGCGGATCGATCCGGCCACCGAACAAACCCCGGCGGCGGCGGCGGCGGCG
GC