morexGenes - Barley RNA-seq Database

Contig contig_306312

Source Contig contig_306312

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_306312 (5872 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_306312

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_47456	1	2569 bp	MLOC_47456.1	Available	Available	LOC_Os11g18730.1, FRAME:+2, EVALUE:0.0, 13111.m01888 protein glycosyl hydrolase family 3 protein, putative, expressed

CDS Structure of MLOC_47456

Contig Sequence (5872 bp)

>contig_306312 5872 assembly3_WGSMorex_rbca.fasta
TACAATCATCACTGTAGCAAAAGTCGAGGATGTCACATGCTTCCTCTTAGAATGAGAGGT
GGTGGAGGGGTATACATAGTCATCTCCCAAAATCCAATTGTTACAACATTATTGCCCAAC
TCAGTGGTATCGAGTTGCACTATATGTGGTAACTTTTGAATTCTCAGGAAGACCGATATG
TGAATCTTGGTGGTACTGATTCGATGACCTAGGACATTTTCCAAATCTCGGTGAGACCGA
TTTCAAAACTCGGAAATTTTGATTCTTGAAATCGACATACAAGAAAGTTGGTCACTGTCT
TTCAGTGGCACCAATATGAATGTTTGTGGTACCGAGAGATTAGGGTTTGGCAAAGTTTTT
ATCAATGGGAAAATCGGTAGGGCCGAAATGGAACTCTTTGTGGCATCGATTTTTATGTGA
AGGCTTTGGACAGAGATTTTTTGTGGGAGAATGACGGAATATTTTAGGTGGCTATCTCTA
AGCACTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCTTTC
CTATGGACTTAAAAGTGATTTCTCATAAATATAAAATATAGGTTCTCTTGCTTGAAGCTG
GGCCAATCCTATCCCTTTCCTTGCATCAAGTGGTTTCTCCTCACAATCCTTTAGCCAATG
CATCTTTAAACTTTTCTGAAATATACTTGGATAGAATCATTAGTATAATGATACATATGT
TGTTAGTAATTACTAAAACCACCTTAGGAAGCAATTGCCCTTTCAGTCAGAGCACCACGT
CGCTCAATCTAGTTCCCCAATTGGTCGTGGTGTACGTGTTCTCTCCCTTAAAATTTTGGT
GTGGCGTTGCAAGCTTCCTTGTATGAAAGTTTTTCTGTAACATCATTCATGTTGCAGAAC
TTTTTTCCGAAACTTCATATAAAGGTGAAATCAAAAAAATAGTTTTGCAAAATTATCACT
ATTGCAAAGTTTTTTCTGCAACAATACCTATGTTGCAAAAGCTTTCTGCAACGAGTTGCA
AGGATTTCTGCAACAAGTCCTCTCTTACAAGATTTATGCCACAACAACTGTGTTGCAAAG
GTGAAAGACGCACTCTGCCACACATCCGATGGATTGCGAGGCGACGGATCTTTTAAAATA
TCCGCCGGCCAACATGTAGCGGCCCCCATAATCTAAAGTGACCTGTAGTCGACCCATATA
TGACTTTTATCAATGGAACCTTGTTGTCATACTTACATATGGAACTCATACTCAACACTC
AGTCCAACCATATATGTAATTAAGATATAGACAAAATCTAGATGGGTTGCAAAAACACAA
CATGCACATAAATCTTCTCCCTCTGTTTTTAAATACTTGTTGTTGAGGAGAACTAGACTA
GTTCTCTCCAACAAGTATTGCGGTACAAAAGGAGTACTATACTTGAACGGTAAAAACATC
TTATATTTTGTGACGAAGGTAGTGGTAGATGTGCGGCCCAGTTTCTTGTGACATTTGGGC
CCAGTTCATACTCGAATATTATAAAACGGAAGAATTCTAATGCCCCACATATATATAGTT
AGATTCTCATTAATAGAAACGAATTCCTACTATTCAAATCTGCATATGCACGCGTAGGAT
ACTCATCATTGGTTTAACGGGAAAAAATTCCCCAATTAATGTCCAGTAGAAATGCATACA
ATCCTTCCATTTTAAGGGGAAAAAATCACTACCATTATTCGGTAGTAAAGGTAAAACATT
TAGATACTTTTTAGGCAAAGAAATACATGCAGATTTCTTTTTGAGATAAAGAAAAACATT
TAGGTTCTCAAAAATAAATAAATTAGGTTTTTTTAGGAGTAAATACATAAATTAGATGAG
TTGTAAATATGACATATATGCAGATAGATCTATGTAGTTGATGTGCGCCCGGTTTCTTGC
CACATTTGGGCCCGGTTCAGATTTGAACATCTCATTTAGCTTCACAGAGTTGCCTAAAAA
AAACTTCACGGAGCCCTAAAAAATTAGCTTCACATCACCCGCTTGCATATATTTGACAGA
ATATTAATTCTATGCATGTATATAGTTGGAAACTTGTTTCATATTTACAGATGGAACTCA
TGCTCAACCCACAATCCACCACATGTTAGTTTTTTTATATGAAACTTAGATGAACGTAAA
ACTTAAATGAGTTATTTTTTTAGAGTGAATCATTTAGATATTTTTCAAGGCAAAGAAATG
CATGTAGTTTTCTCTTTGAGATAAAGCAAAACATTTTGATTCTAAAAAATAAATGAATTA
GATGAGTTGTAAATATGGCATATATGCAGATAGATCTATGTAGGTTATGTGCGCCCTGTT
TGTTGCCACATTTGGGCCCGGTTCAGATTTGAACATCTCATTTAATCTTCACATGTAATT
CTCAAAAAAATAAAAAAACCTTCACATGGTTCTCAAAAAATATTAATTAACCTTCACATC
GCCCATTTGCATATAAGTATTTGGAAGAATATTAAGGGTGAGTATTAATGCCATGCATCT
ATATAGTTGGATTCACATTAAGAGGAATGAAATCCTACTACTATTTTTGCTGCATATCCG
CGAGTACGTAGGATACTCACCATCGATAGTATATCAAAGTAATCTCCAATTAATGTCCAG
TAGAAATACATACGATCCTACCATTTTAGGAAAAATCACTACCAAATATTCCTAATTAAA
GATATACCATTCAATGTGAAAACACACGTGTAAGTGGGAAAAAGCTGTACACGTGGCGTT
GCCTCGTTCGCCCAGAGCGCCTATATAACGAACTGCCTTGACCCATGGACTCTCACACCC
CATCTCCTCTCTGTACGTCGTCCATTCTCCTGAAAAGCTGAAGCTCGCCATGGCCGGCAT
GGTCATCGTGCTCATGGTGGCGACGTTCCCGGCGCTGCTGTGCGTGGCGGCAGCCGGTGG
CGCCCCGCCGTTCTCGTGCGGTCCGGGGGCGCCGTACGTGCCGTTCTGCGACCAGCGGCT
GCCGGTGGAGCGGCGCGCGGCGGACCTGGTGGCGCGGCTGACGCTGGCGGAGAAGGTGTC
GCAGCTGGGCGACGACGCCAAGGCGGTGCCGCGGTTGGGGGTGCCGGCGTACAAGTGGTG
GTCGGAGGGGCTGCACGGGCTCTCCATGTGGGGCAAAGGCATGCATTTCAACGGCGTCGT
GCAGCGCGTCACCAGCTTCCCGCAGGTGCTGCTCACCACCGCCTCCTTCGACGACAAGAT
CTGGTACTTCATCGGCCAGGTATCGTATGTACCCACTCATCAACAGTGTTGTTCAATCTC
AGTAGACTGAGATTTGGTCGTCATGTCTCGGTTAATATTATATATTTATATTTATGAGAT
CTTACGTGAAGATTCATGTAAAAAAATTATTTAACATTTTTAATTCTTTTTATATGTTAT
GTCGTTTGATTGAGACTTGGTTAAGTTTCAGTCGACTGGATATGATAAATGGTTCATCGG
GTTATTATAATTGTATACATGGATGGTATGTAGGCAATCGGCGTGGAGGCGAGGGCGCTG
TACAACATCGGGCAGGCGGAGGGGCTCACCATCTGGTCGCCCAACGTGAACATCTACCGG
GACCCGCGGTGGGGGCGTGGGCATGAGACCCCCGGCGAGGACCCGATCACGGCGAGCAAG
TACGCCGTGGCCTTCGTGAGGGGTCTGCAGGGCCCCTCGCCGACGACGCTGCAGACCTCG
GCGTGCTGCAAGCACGCCACCGCCTACGACCTTGACGACTGGCATGGCACCGTCCGCTAC
AACTTCAACGCGAGGGTGACACCCCAGGACCTGGCCGACACCTTCAACCCGCCGTTCAAG
AGCTGCGTGAGGGAAGGGCAGGCCACCTGCGTCATGTGCGCCTACACCTCCGTCAATGGC
GTCCCCGCCTGCGCCGACTACAACCTCCTCACCAAGACGTTGAGGGGAGAGTGGGGGCTG
AAAGGGTACGTGGCTTCCGACTGTGACGCGGTTGCGCTGGTGCATGACGGGCAGCACTTC
AGGCCCACGCCGGAGGACACGGTCGCCACCACGCTCAAGGCCGGCATGGACATGAACTGC
GGGAACTACACGCAGGTGCACAGCATGGCGGCGCTCCGGCAGGGGAAGATGACGGAGCGG
GACGTCGACAGGACGCTCGTCAACCTCTTCTCGGTGAGGATGCGGCTCGGGCACTTCAAT
GGCGACCCCCGGAGCAACCAGATGTACGGGCACTTCGGCGCCAACGACGTGTGCTCGCCC
GCCCACAAGAACCTGGCGCTCCATGCGGCACAGAGCGGCATCGTTCTGCTCAAGAACAAC
GCCGGCATCCTCCCGCTTCATCGGTGGACGGTCGGGTCGGTCGCCGTCATCGGCCCCAAC
GCCAACGACCCCGGGGCGCTCCTCGGCAACTACTTCGGCCCGGCGTGCGAGACCATCACG
CCGCTCCAGGGGCTCAATGGGTACGTGAAGGACGTGAGGTTCGAGCCCGGGTGCAGCGAC
ACGGCGTGCTGGTCCGTCGCGACGGGCAAGGCGGTGGCGGTGGCGAGGTCGTCAGACCAC
GTGATCCTGTTCATGGGGACGAGCCACGTGCAGGAGGAGGAAGGGCGGGACAGGACGAGC
CTCCTGCTCCCCGGGCGGCAGCAAAGCCTCATTGAAGCCGTCGCCAGGGCGGCGAAACGG
CCGGTGATCCTGGTGCTCCTCACCGGCGGCCCGGTCGACGTGGCCTTCGCCAAATTCAAC
CCAAAGATCGGTGCCATCCTGTGGGCCGGATACCCTGGGCAAGCCGGCGGGCTCGCCATC
GCCAAGGTGCTCTTCGGAGAGCACAACCCCAGCGGCAGGCTACCGGTGACGTGGTACCCC
GAGGAGTACATGAGGGTGCCCATGACGGACATGCGGATGCGCGCCGACCCGGTCACCGGC
TACCCCGGCCGTAGCTACCGCTTCTACCGGGGACCGACCGTCTACAAGTTCGGCTACGGC
CTCAGCTACTCCCGGTTCTCCCGCCGGCTAGCATCCTCCGGAATGACCGGTGACCAAAAG
AATCTGCTTGCCGGACTGACATCGACGACAGCGGCGGACGATGGCGTGAGCCACTACGAC
GTGGAGGAGATCGGGGCCGAGCGGTGCGAACAGCTCAAGTTCCCGGCGGTGGTCGAGGTG
GAGAACCACGGTCCCATGGACGGAAAGCACTCGGTGTTATTGTTCCTCCGATGGCCCAAC
GCGACGGGTGGGCGCCCGGCGAGCCAGCTCGTCGGGTTCCAAAGCCAGCATCTCGAGTCC
GGCGAGAAGGCTAGCCTGACGTTCGATGTCAGCCCATGCGAGCACTTGAGCAGGGCGAGG
GAGGACGGCAAGATGGTGATCGACAGAGCCTCACATTTCCTCTTTGTTGACGAGGATGAG
GCCGAGATCAGCTTCGACTCCTGAATTAAGTCTCCTTAGTTAGCCTATTTTTAGCAGGGT
TAAAAGATGAACTCCAATGCGGGTTGTTGCGGAGACACAATTAACCGATGCCTCGAAGAG
CTAGCTAATTGTTCCAGCAACATCAAGAATGTTTGCGAGTTTAGTGTAGCTATATGTAAT
GGAATTGTCTGTTTCTAAATCCTCAATGAGAGATTTTTACATGATAAATGAAATTCTTAG
TTCTATATCCATAATGTTGAATTGTTTGCTTAGAAAACAGGTGTGTGGCTTTAAATTAAT
AAAGCCCACATATGTCGTTCACATATGTCTCATACTTGTGATCTGTGTTGGGTTTTTCAT
AAAAAGAAATGAATGATGTAGCACAATATAGGTAAGTATTTCCCTCGGTAGAGAACCAAG
GTTTATCGAACCAATAGTACAACAAACCCCGTCTTCAGCCGCTACACACAAA