| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_306142
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_47449 |
1 |
720 bp |
MLOC_47449.1 |
Available |
Available |
LOC_Os12g38020.1, FRAME:-1, EVALUE:2e-27, 13112.m03917 protein retrotransposon protein, putative, unclassified |
| MLOC_47447 |
1 |
924 bp |
AK358435 |
Not available |
Available |
None |
| MLOC_47448 |
1 |
804 bp |
MLOC_47448.1 |
Available |
Available |
LOC_Os11g47220.1, FRAME:-1, EVALUE:3e-84, 13111.m04680 protein retrotransposon protein, putative, LINE subclass |
CDS Structure of MLOC_47449
CDS Structure of MLOC_47447
CDS Structure of MLOC_47448
Contig Sequence (8290 bp)
>contig_306142 8290 assembly3_WGSMorex_rbca.fasta
GGAGAGGCCACCTCTGATGTCACGGACCCAGCGGTTGTTCGCCAGGGCCTGCCCGACTGT
GATGCCGGACAGACGGGCAAAGGAGGCGAGAGCTGGGGCAGCTTCAGGTACGGAGAGTCC
GCCTGGCAGCCAACGATCATGCCAGAAGAGTGCCCTATCACCCCGACCCAGGATGATCTG
CGCGTCGGCCCGGAAGAGAGCCATAGCCTCGGTGTCCTCCTGGTCTGGGATAAGGGACCA
AGGCCGCGGCGAGTCCGACCATCTCAGCCATGGCCAGCGGCATTGAAGCGCGACGCCGAA
TAGGTGCAGATTCAGAATCCCCAGCCCCCCCTTGTCAGTAGGCATACAGACCCGAGACCA
AGGCAGGAGACAGTGTCCACCGTTGATCTCCTCCTCGCCTTTCCATAGGAAGCCCCGGCA
TTTCCTGTTGATGATTTTGAGCACCCAAGCTGGGAGGGGCAGCACTGAAAGGAGGTGAAT
CGGGAGGCCCATCAACACTGAGCAAGTCAGCGTTAGGCGGCCACTAGGGGCCAGAAAACG
AGGCTGCCAGCCCCCCAATTTCTTGGCGAATTTGTCGATGATCGGTAAAAAATCCGCCCG
ACGCAGCCTTCCGGTGGAGAGGGGGAACCCAAGATAGACGATAGGGAAAGGCTTCAGGCT
GCAGCCCAGAATGGTGGCGGCCGTGAGCTCCTGCTCATCAGTGCAGCGGATCCCAGAGAT
GGTGCTCTTTGCCAGGTTGATCTTCAGACCAGAGGCATCCCCGAGCAGGCGCAGGAGGGG
GGAGATCACTTGGCAGTCCGTCACCGTAGGCTTGAGGAGGATAACCGTGTCGTCAGCAAA
GATCGAGGCCTGCGGAACCTGAACATGTAGAGCCAACTCTCCAAGGAGGCCGTGATCCGT
GGCCTACTGGATGGCACCATGGAGTGCGTCCATGGCCAGGATGAAGAGGGCCGGCGACAG
CGGGTCGCCTTGCCTACCCCGCAGCCAAGACGGAAAGAGTCGCTCCTGGCTCCATTGATC
ACGACCGACGACGATGCCGAACACAACAGATTGCAGATCCAAGCTCTCCACCGAGAACCA
AAAAACCTCTGCAAGCAAGCATGTCCAGAAGGAATTCCCAGGACAGTGTGTCGAATGCTT
TGGAGATGTCGATCTTCAAGAGGACGGCTGGCTGTTTTTTGCGATGCAGGTGCCTGATGG
AGTCCCGGACCAGCTTGAAATTCTCGTGGATGGTCCGAGACTTGGTGAACGCACTCTGAG
CGGGCGAGATGAGCTTGGGCATCATGGGAGCAAGCCGGCCAGCAAGCAATTTTGCCCAGA
TTTTGGCGAAGGCATGGATGAGTCATATGGGGCGGAAGTCCTTGATGTCAATAGCCACCT
GGACCTTGGGCAGCAGTGTGATGATTGACGAGTTGAGGCATCCCATGTTCTGATTAAACC
CCTGATGCAAGCAGTGCACCGCCTTGACGACGTCCTCTGCAATCACCTCCCAGCAGATTT
GGAAGAACAACCCCGAGAAGCCGTCCGGCCCGGGAGCACGATCAGATGGCATATCCATGA
TCGCCGCCTGGATCTCCTCCGCCGAGAATGGCTGTTCGAGCGCTTCTGCCTCCAGTCGGG
AAAGCCGGGGAAGTGGCAGCTGCTCAATCGCCAGTCGCCTGGGATGCGTTCCATGCGTCC
CCATGGTGCTGGAGAAGTGTTGGAGAGCAAGCTCTAGTTTCTCCTGTACCGAAGAGGCCA
CACGATCGCCGTTCCGGAGCAAGGGGATGAGCTGTTTGCGCCTCCTGCTGTTGGCCTTCA
TGTGGAAGTATTTGGAATTGGCGTCACCTTCCTTGAGGTCGCGCACCCGAGCACGTTGGC
GCAGCCGGACGCGTTCCAGGGAAGCCAAAGCCAGGTAGCGGCCTTTTAGGAACGCCCGCA
AGCGTCGCTCGTCCGGGGCGAGCATCCGCGTCTCTTGGGCACCATCCAGCCTGAGGATGA
TCTCGTGGGCCACCTGCAGAAGAAGCGAGAGGGCGCTCTGCTTCGGCTGCCCCCAGCTTC
GAAGCGCCTTCGCCGTGTTCCGTAACTTCAGGTCCAGCGCGAGAATGGGATCCGCCGCAG
TCCCCGCGCTATGCCACGCCCTGGCAACCTCCTCGAACCCGGGTAGATGGGTCCAAAAAT
GCTCGAACCGAAAGCGATTCGAGCGGGGCGCCGAGCAGGAGCACGTGAGTAGGAGAGGGC
AGTTGTCCGAGACGGATGAGCTCAACGACACGAGGTCACTGATGGGGTACAGATCCTCCC
AGGCGGGAGAGAAGAACAGCCTGTCCAGCTTGACGAGCGTGGAGTCTTCCTGCTCATTGG
TCCACGTAAATTTCCTCCCCTGCAGTGGCATGTCCTTAAGAGCCATGGAGCATAGCGTGT
GCCTGAACTTGTTCATCAGCCGGCGATTCACCCGGCCGCGGTTGTTGTCCTCCGCCCCGG
TGACCAGGTTGAAATCCCCGCAAACGATCCACGGCAATTGGATCGAGGACCCCAGTTGGG
CCAGCTCCAGCAGGAACCTTGGATGTCCATTGATGGGTCATCCACGGCAATTGGATCACA
ATGCTTGTCCCTTGGATGATCTGGAAACAGAGGAACGAATGTGTCTTTGACAATGCAAGA
CCCTCAATAGATACATTAGCTGATAGGATCAAAGTAGAGGCCAAATGTTGGGCACAAGCT
GGGGCACAGGGGCTGAGGGTTGTGCTGCCCGCCTCCTGGGATGTCCATTGATGGGTCATT
GGCCTTGTAACCACTACCTCCTAGGAGGTTTGTACTCTCCCACCTTTTCAATGAAATGAA
ACGCAAAGAGCTCTTTGCGTTTTCTCGAAAAAACTTCATTCATCTGCTCCACATGCCTCA
ACTTCTTCCATTATTGGAGCTTCCATCTATCTTCCCATGCCATTTCTTTGCCTTTTTGGC
TTGGGTAGTCTGCACTTCTTCCTCCTCGGTGTCGTCATCTTCAACATCGTGTACTTTAGC
ATGCTCAGAACCTAACATCATAGAACTTTCTGCAGTAACATTGATATTCTAAAATTTTTC
AGCACCACATTTACGAAACTGCAAGAAGTCCTTATTTTCCTGAATAAATAAATCGTTTGG
CGCTTGTCAAAAATATATATTCTAGTGCAATATTAGTTACAAGTTACAACACTATTTGAT
CTTATGAACATGACTTACTTCACCGGCTTTTTTTTCCACCAGTCATTATTAGTGTTAGAT
TTAGTTTTGATTAGTATTTGTACAGAAACAACTAAAGAATTACGTATAGGAAATGTGAGC
ACTAACTTCTCATATTGGACTCCTCGTGTCTCTCGGTGCCAATGTCACATTTAGGATCAC
CCAACTTATCAATATCTTCATGATCAGACATGTTGACAGGAGATGCTCCACTAGCAAAGG
AGGCATGCCAGACTTATCTCTTTTAGTGCCTTCCCCTGAGTAAACAAATGAGGACAAAAA
TAAAATCGCGATGGATTACATTGATAGTTCTTGGCCAAATTATCACATAGAAAGGCAGAT
GCAAACCTTGGGTGGGGAGAAAAAGGAGCAGACATGGAGTAACGCATCTCCACTCTGAGT
AAGAGTAACTGCAATGGAAGCCGGATAGTCGAGCTACCTTGCCATTATTCTGCTGCCACC
TGACTCAGGAGGCATTGCATACCATGGAGTCAGAACCGTTGCAGCTGGTAGAGAAGGTGC
TGGAGACCCATGAAACACTCGCCAGTCAGGGCAGGCTCTGACTGAAAGGCTCAGAAAAGG
TCTCCGAGGAGCTGCGTTGCGCGTAGAGTTTAGAAGGTGCCCAACTCAGTCTCTGGAGCA
GCAGTCCAATAAAGTTGGGCTGGCCGGGACACCAGGACCACGTGGGGCGTGGTGGGAGCA
TCGGGTGATTGGATGATCTGGAGCGTTAATCGAGCGGATCGAATGGTTCAAAGCCTCAAA
ACACTGCGAGAGGATGTTGTTGGCTTAGTTTTACTGTTTCTTAATTCAATCCTTACTGAA
ATCTTATAAGAGTTTGTTTAGGCTAAAATTTTGTACCGGTACATTATTAAAAGTGAACGC
AGGAGAGTATTGATTTTGGTGCATATGCATCTAGATAAAATTTCAAGTTCATATTTTGTA
CTGGCACTTCACATAGTGCACATTAAGTAATGCTACATTATTCAATTTACTGCCCTTTAA
CATGTCTGGGCTTTACAATGTGACAGATTGCACGTAGGGATGAAGAAATGGCTCCTTATA
TCGCAGAATCGAAAAGGAACTACGTATTTGGTGGGATTTCTAGTGTTGCTGCTAATGCAT
CAATAAAGGTTTGTTCGAATCACTGCTAATTTTTCTTGTTATAAGCCTTTACTGTCGAAG
CAGATTCCAGATGTCCTACTTACGGTTGTTCAATTATGAAAGGCACTTGCATTAATGAAG
TCCATCAACCTGTTGGGAGTTCAGCAAATATGCAGAAACTCGATAGCACTAGAACAGGTA
GGACTTCCATATGCAGCAACAATAGTTTTTGATAGGTCGACTAGATGGCAGATTCCATAG
TCACATGTGTAAATTATTTCTCTCTATGCAGGCACTTGCAGCCATACCTTCCATTGATAG
TGAGGCAGTCCAACAGAGATTAGATCGCGTTCGGACATTCTATGAGCTATTAAACCTGCC
TTTTGAGGTACACTACTAATAATATCATGTATCCATAGTCGTGTTCTTCTTTAAAGCTTT
AATTAATCACCCTTCCTCCATGTGCAGACTTTGCTTGGGTTCATTGCTGAACAGGAATAT
TTATTTTCTGCAAAAGAGTAAGTGTGTCGAATATTCTCATTTACATTGTCATCTTTTCTT
GGTGAACCATATTTAATTTGATGTTGCTTTGTTCGTGTAGATACTTAAGCATACTAAAGG
TCAATGTACCTGGTAGAGAGATACCAATGGATGCTGAACGACGTATCTCACAGATTTTGG
GCCATTAAATTGAATTGGGCAGGATGATTTTAGCTATAACTGGTGGCAGATGTCTCACAG
TATCTTCCTCGGCTTTCTTTGTAGCTGTAGTTAATTTTGTTATTTCTGTTTGGTTTTTTC
TTTTGATGTCTACATATAGGTAGGTAATGTACTATTTGTTGTCTCATTGACAGTAAATTT
GTGGTATTTTGAATGGAACGCTTATTCTTGATCCTTGTAAATGTGTGATATTTTGGGTGT
AATTTTAACAAAATCAGACTCGTGTGTTTTGTTATTCAAATTGTTGCAGCCACATGTTAT
TCAAATTGTTGCAGCCACATAACGCATGTAAATTGTCACAACAGATGTGCCAACTTTGGC
AACGAATTTAATACCGAATGTGAGCCATGGGGCTAGCAAATTGTACCTCCTTCATAAGAC
GTTTTAAATATTTTAACATGGACTATATATAGAGTGAAATGACGGAACAAACATACTATG
TGTATATATAGTTGACTCTATTTTTTTGTATAATATTGTACATTTGTGAATTAAGGGAGT
ATCTAACTATGGAGGAAAAGAGTAGTTGATACAATGGAAAGACAAGAAGTCATTAAACAA
CCAGTTAGAATTAATTTACATAAAAATTTATATTGATCGTCTTTTTTGTTGAACATGGAG
CAAGGGAAGATATGCTTGCAAATGTTGTACCAATCTTTGAGTAAACATGATCTAGTAAAT
GCTGAAGTAATGTTAGGTTGCGGTATCGCCCCATGTAGCGCAGGCTTTGAAATAAGACAC
TGTTTTCGAATAAATCGAAAGAGGGGACAACCATTGTTGCTTTCGGATTAGACATGTTGA
GGTAAATAAAGGTTGGAGAGACCTTATTCTAATGCATCATTGTTTGCCACCATCTCATTG
ATGTTGTGAGGAAACCAAAACCTAAGGAAGAAATTATCTTTACCTAAGGAAAACGGAAGC
GGTGAGCCCCACTTGACTAGCAGCCAACGAGGACGCCCGTGGAAGAAATGAGGTACATCA
AGGCAGCAGGGACGAGAAAACCATGCTTGCGGCTAGGGCTTGGCCAGGGGACAATGTGCG
AGTCATAGATTTTTAATAGTAAACCAAACATATGATTAAGGAATATCTTAAATTTCAGTG
TGTCCCTAGATATGCATATCGCTGTAAATGCATATTTTATGATTAAGGATATGTTTATCA
CATATTATGTTGGTAATTTGTCATGTGTAACTAATGTTGGTGACCTCTAAAAGTTTGACA
CATTGATGCGAGAAAGTTAGTTACTTTTGGATTAATTTGGATTTAGATTTACCATTGAAC
GAAGAATTATATTAGGTTAGAAGTACTAAATTAATTAGTGTGTTGTAGAATCTTGTCACG
TGGGAGCAAAGTTATAAGCATCGCGTGTTTCTAATAGATCATGGTTAATTAATAATAAAT
GAATTTTCTTTATGTTGATTTGCTTGAGTATAGTAGCAACAGAAATTGAACAAACATAAA
CCCACCCAAAAACATCACGCTGAGCATGTCTTGTGAGCGCATGTCATGCAACATGTTTAT
AACATCACAATAAAGAACAATGTAATTTTGTACTAACAAGCTTCTTATTTGTGCCTTAAT
GCATTTAGGAAGCACTTTTTTGTCTAAGTTAACATGGGATTAATAAATATGTATAACCTA
ATAAGTCTAAATACTTTTGTGGCATTATCTCCACATAAACTAATTGAATATGAATATTCG
TCCAAACCACAAAGGAAGGGTACAAAGTATAAAAATCAACATAATAATATGTCATTCAAA
TTCATCACTAAGTTCTATAATTTAGCTCTCGAAGGTTGCGGGTTTGGCAAAATGTTTGTC
CCCTAGGGTGATGGTTCCATAAGTGTCGTAAGGTGGTCACAAGGCGACCAGATCTGGGTG
AGGTCTCCTATAGCCGATGTTGTTTCCAGTGCAAGTTTCCTCCGTCTTAGTTCTCCAAAA
TAACCACTACCACCCGCTTCCTGCTAGTTTGTCCTCTATGGTTTGGAGTTGGTTCTACAC
GGGAGATGGAAGATATAGTCGCCTAGTATTTCCTTTTCTACCCATTAAAAGCCTTCTGGG
AGTTGTTAGGGATCATGGTCGTACACCAGTCTCTATGCATCATTGGTGTTTAAGGTTGTA
GTAGGGATCTCCATGGAGTATGTGGAGGGGATAATGAAGGGGTCGAGGTTGTTGGCCGTG
GAGAGGAAGTGCATGAAGATCCAAGTGGATGAATCGACAAAGGTTGTGGTATGGGGGACG
CCAAACCGTAAGTAGTAAACATGTTGTTCGTAGAATGCCTAGCACATGCAATGGTGGTGG
GGAACACACTTGGCAGGATCTGGTGTCGAATAATGGGACTAAGGTGCAAAGATCTACTAC
CTTCGTCCCACAATATAGGATCATTTTTTAATATAAGAGTGTTTCTAGTGTCAAAACCAC
TCATATTATGGGATAGAGGGAGTAAGTGAGAACGTCTGTCTGTTTATGTTCCAATAGTTA
ACGGGGAAGAGAAGAGATCTAGAAGATGGGCCATGGTGGTTTGGAAAAGAGTTGTTAGTT
GAGGAATACGAGCTCAACATCATCTTGATGTGGCTATGCGTTGGTGGTGTTATGAGCGGG
GGTACTGATGAATGTACATGAGAGAATTTCCATGAGTTTTTGGATGTGGATCTTGTCCAA
ATGGGATAACAGTGGGGAATTTCTTGAGTATGGAAGTTAAACTAGACATTAATGAACAAC
TTCTGCAAGGCGTCATGCTGGATAGAAAGAAGGAGAAGGAGGATGGACGAAATATGCTTG
AGGAGGAAGAGAAACAAAGTAGAAGCAAGTACTTTGGTGTAGGTTTGAAAATGAACATCT
ACTTGATTTCCGTTACTCATGTGGCATAATAGGACATGAAGACAATGATTGTTTGGTTAA
GCTTAAGGAGGCTCAATAGTATGGTGCATGGATGAGAGTGGATAAAGAAGGCGAAAAAGG
GGGAGGAGTGGTAGCAATGTCAATAAGGTGTATCTCTGGTAGGAGTGGCCCCTTTAACTT
TGGCAGAGACAATCGTTGGCATTACTCATGGGTAGTAGAGGGAGTAGGGAGATAGTGACT
CTAAATCTTGGTGGAAGGATGTCATGGAATCAAAGACCAAGGATAAAAGCAATGAGGGAG
ACAATGAGGCGACAAGCCTGCTAAAAATAGGGACTGGAATGGAGAAGCGGGGTCAAATGA
AAAAGGGGAACAACAAAGAGGTTAATGTTTGCAAACATGCAACAAATGATAGAAAAGGGA
GGGGGGGGGG
