Contig Data
morexGenes
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Map Locations of contig_300213 (3884 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_300213

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_47071 1 146 bp MLOC_47071.1 Available Available None
MLOC_47072 4 1383 bp MLOC_47072.1 Available Available LOC_Os06g12150.1, FRAME:-2, EVALUE:4e-135, 13106.m01319 protein shikimate kinase, putative, expressed





CDS Structure of MLOC_47071






CDS Structure of MLOC_47072






Contig Sequence (3884 bp)

>contig_300213 3884 assembly3_WGSMorex_rbca.fasta
AATAGGTTCAGATCTAAAATCTTGGCACTCGGGTCCTAGTGACAAGCATTAAGCATAACA
AAGTCATAGAAATATCAATCTCAGAACATAATGGATNNNNNNNNNNNNGCCCTATCAACT
TAACTCGATTACAAGATCAATCTCATCCAAATCACATCACCATCCAGCGATCCTACAAAG
GAATTACTCACTCCTGGTGGTGAGCATCATAGAAATTGTTGATGGAGAAGGGTTCGTGAT
CACGACGGCGACGAATCCCCCTCTTCGGAGCCCAAAACAGACTCTAGATCAGCCCTCCCG
AGGAAGTACAGGGGTGGCGGCGACTCCCTGTCGTAGAACACGATGAAATCTTCTCCTGAT
TTTTTTTTCTTCGAAGATGTGAATTTATAGGACTGGAATTAGGGTTGGAGGAACCACATG
GGCCCCACAAGCTGAGAATAGTCTAAATCTTGCCCACGCTCATTCTCGATGATCATGTTA
TGCATGACCGCACAAGCGTTCATGATGTACCAAAGGATCTTTTGATCCTAAAATCTAGCT
GGTCCTCTGACAATAGCAAATTGGGCTTGTAAAATCCCAAAAGCTCTCTCCACATCTTTC
CTAGCCGCCGCTTGAGCATTGTTAAAATCAAGATTTTTCTTACTTTGCAGTGCCTTCAAT
GGCTTCACAAATGTTTACCACCTTTGGTAGATACCATCCGCAAGATAGTAGTCATAGTTG
GATGTATGACCATTTGCTACAAACTCCATAGGTGGAGTTTCACCATTTGTAATCCTATTC
ATGAGTGGTGACCATCGAATAATATTGATGTCATTGTAAGATCCGGGCATTCCGAAAAAG
GCAGCCAAACACCTTGTGGGCGCGGAGCTTTTTTTGACGTGGATAGCTAGGATCATTACG
ATTTCCTCCTCCTCTTGAAGATCAAATTCTTCATCGGAAGAATCATAGGACGAACCCATC
TACAAACTTGAATTTAAACTAATTTAAAACTACAAACAACATGCACCAAATTCATCTATA
AATATAAAGTTAAGCAATATATATTTTGCAAATATTTTGTCAAACACCTTGTGGGCACCG
AGCTACAAACGACCGCCGAGCGATGTTCGTCGGAGGAACGAAGCGCTCCAGGGGCGGCGG
CGAGGAGAGCAGGTAGAAGAAGCAACGGTGGACACCGGGAGAAGTAGGGGGCGTTGGGGA
GAGTCGGGGGAACCACCGACGGCAGGTATGGTTGGAGGCGCCCACGCGAGGGGGTTTCAG
ATCTGGTGGTTCGCACGCGAGATTTCACAGCGCGCTGGCGCGTGTTTACCGCACACGGGA
TTATAGCACGGCTGCTGGAGCGCTACTTTCGGCAGCGCATCCTGTTTTTAGGGTGCGCTG
CTTATTTAGCGCGTCTGTTGGAGATGCTCTTACAAAGAATGGCGAAACGCTGTTGAGCTG
ATTTCATTCAGTGGCACTTTAACAACTAGGAGTACTTTGTATGCAATGGTATTTTGACAA
CTGAACACCAATGTAATGCTACTTTGACAATTGTCTGTTTGAAAGAACAGCTGAGTGAAA
AATGCAAGTGCAATGATCTCGTAACAGTGGAGCTCTTAACATTAGCTCCATCCGTTATTC
TTTTATTATTTCCAGAGCATGCTTCAGCACAGCTCCTTTTTCAGTATAAAGAATGAATCA
ACAACGTTGAGCGATACAAAGTGAAGATACAAGGTACAAACAAATTGGGGCCGAAATTCT
ACAAGGGTTGCATTCAGCCTGAGGTTGCATCCTTCGTCCCCGGAACCAATTTATAAGTCG
GCGAATGGGCCACTGGCCATGGAATGTTCAGTGACAAAATTCTTAATTTTTTGCAGGGCC
TGAAACAAAAACAGGTAAGTTACATCAGGGAGAAATTATTTTCGAGGGAGTGGGTGCATT
GGAGAAAGCATGGTATGCGCATACGAATAATTCTTCGCAAAAATAGAAGCACATGAACAA
TTGACTTGAGAAGTACAATACCTCGACAGCAATATCAGTCGGGGTTAGCTGAGAGACATC
ATCATGACCCTTTTTAGCTGCAAGCTCTGCAAAGGTAAACACCAGTTGTGTTATTCTCTG
TTTGGGCATTACAACTTCGCTTGGGAGAGGCCGGGGTCTCGAGACCCATCTATGACCATG
AAGCCAGGGGCATCTGACATACCTTCAAGAGAGACCCTTACGTCGGCATTTGCGTAAGCA
TCCCCTCTTTGCTCAGCGAGCAGGCTGAGTTTCGTGAAAGCCTGAGGCACCAAATCAACG
AGTCATGCATTTTCACTAGTGCAATGCAAATATAGAGAAAGACAGATGTGTATAACCAAT
CAAGATGCAAACAACTTGAGAAATTGCAGGGATGTTTACTGTAATTTTTTGTTGTCTCAT
TTAGTGTTTCATAACACAGCTATTAATTTTTATGTGATGAGCATGCTAAGACAACTTTAT
TTCAAAATTTTAGAGTACGTACCGCTGTGTATGGATCAGCAGATGGCTGATCTAGAAGGG
GCCGAGAAGCAGTCCCAACTTGTGCAATTCGCTTCGCAAGCGCATCCAAAGGCACATCCA
ACATGATAGACAGACCTTTCTTCATATATCTCCTGAAAGTAAGGAAAATTGACAGAGATC
AGTGCCATTATTCATCTAAAGGAGAAAACAGGATTACATGACAGATTACAAATGAGACGG
TGGCAAGATCAGAGTAAGTCCGATACCAGTTGACTGGTCGAATGACGGCACCACCTCCAG
TAGCAACAACTAGTCGATGCATTGAGGATAAATCTCTCAAAACACTACTCTGCAAGACAA
GTAGGTAAAGAAATCACAGAAATTGTTAGTCCATAAGTCTTTCCACTCTAATTACTACAA
ACACATGAAATCTATAAAAGACCAAAATGTCAACAGAATTCAGGGATTTATTTTAGTATA
TTTACCTCACTGTCTCTGAAGAATGCTTCACTATGAACCTTAAATATTTGAGCAACGGAA
GGCATTCCGACTGCCTGTTCGACCAAACTATCACTGTCAAAGTATGAATAACCCAAGACT
TCCGCTAATATCTTGCCCACGGTGCTCTTTCCAGAGCCCATCATTCCTGCAGTGTGAACC
CATTGTTATTAGTTCGAGAGGCAAATAAGATAAATTAACTGTAGGTAACATCAAACAGGC
AGGTGCAAGAACTAACCAACTAGGTAAATACACCGCCCATTCAATTCGAGCTGAACTTCC
TCTGCTTTCCTCTGAAAGGCAATACGGTTTAGTCAAAAAAATGCCCAGAAGCAACATCTT
GGTTTATTCATATCAGGAATTTTTCAGTATAAAGTATATACCTTTAGCAAGAGGGCTTCG
TCAACTGAGTTATGCAAGCTCTGATGACCTGTACCACACACAATAAGGTCACAAAGAAAA
GTCAGTTTGACTAATCAGCTTGTGCGTCTCGTCAGGAAACCACCCAAGAGAAAATATTAA
GATGTGGCGTATCATTTAACATATGCAGTGTGTGACTAAGTTCTATAGCATGTGCTGCAA
ATAATTGACTACACTAAACAGCTTAGCTGAACCTAATACGCAGTATAAACGTGTCCTAAA
TAAACTTGGTCAAAGTTATGAAAACTTCAATTTCAGACAAAACTTATACACCTTATATTT
TCTAAAGAGGGGGAGGGGGGGTACACTGTTGTACCATACAATTAGGTAATTTCAGTTGTA
CTACCTCCTCGGACAAATTCGACAACAAGATTTACCGCACGTAATTCAATTTACATCAGC
TTTTTTTCTCAGCCACAATTTAAATTCCGTCAATTTCTTTTCCTCGGACACGATTTAAAT
TCTATCAGTTACATTTATTTATTGTGTGTGTGTGTGGGGGGGGG