morexGenes - Barley RNA-seq Database

Contig contig_299009

Source Contig contig_299009

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_299009 (2897 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_299009

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_47002	2	889 bp	MLOC_47002.2	Available	Available	None

CDS Structure of MLOC_47002

Contig Sequence (2897 bp)

>contig_299009 2897 assembly3_WGSMorex_rbca.fasta
AAATGCTCATCAGATAAAAGTACAAGTGTGTTAGTAATTTAACTTTACATTCTGGCAGAA
AAAAAACTCACATCAAAAAGGTTATAGCGAAACATCTAGTACAAGGTATAACCCTCTATT
GCACAAATATGACCTCGCGAAATTTCTATCAAAACAACTTCCTCTGACGTAGAACCAGTG
TAAACCAAAAGGCAACTGCAATGAGCGATGAACATTATGTAATGTCACCAACATACCATC
CTGTAAATCTCTACAGGGAAACAGGATTCCCCCCCCCCCACCGGCGCGGCGGGGGAACCA
CCAATAGGTAAGCTCTGAATTCCTCAGGCACACCCTCCAGTTGGCCATTCTACAGAATTC
AGTTGAGGTAAACAAAGAAATATTCTCCGACAAAATCCCTCAACAAATGGAACCTACACG
AAGATTGGAATCTGCTACAGCATATCCACTATCCAGAGCAAAGAAAGCATTGGAATCCTA
TACATCCCTGTGAAGAACCCCAAACTACGCATCAAATCGCCCAAAATGATTCCTTCTAGA
ATCGTTCCACAAACCGCCGAGCAATATATGCGCGACGAACCACGGCACTTAATTAGCAAA
CGCTCGAGCTTTAACCATGGCGCATCATCTGACCTATTTTGCTGTATTCGCGGAGCCCCC
AACCGGTGATCCTCTGTGCCGCAGCCTTCTCCTTCTTCCTATCTTTATCCGGGTCAACGG
CCTCCTTCCTTTGGACCGCATTGCCGCCGCCGCTGCATCAAGAAACCCCCAAAAAATCCC
CTCCGCTAAAGCCTCGATACGAAGGATTTGATCAAGGAACCGAGAGCAAGGACGGATGGT
GGTTACCGTTTGGGAAGCGGAGGGACACTGGAAGCTTCGAGAATGTGCACGCCGGTCAGG
TCCAGTGCGGCGGGAGCGGCCGCAGCAGCACCGCCGCGGGGAGGCGCCATTGCGGTTCGA
GTGATGTTTCGGCTGTCCCGAAAGGGGGGGAGAGAGATTGTGTAAAAGTCGCGTTTTTAC
CCTTTTACCAGAGTATAAAAGGATTCTGTTTTTTAGGGAAGAGTAAAAGAATTCTTACTT
TACTCCAAAGAGGAGAGGACAGGTCATGTACATTTATTATATACACCGCTGATTTGTAGC
TAGTATATATGTTAAATTTTTGAAGTTTATAATAATCCAAACGATTATTTACTTTTGTCA
GAGCATGAACAAAATTTTCCTTCATGGTGCCTTTTTCTTGCAATATGCTTCATCTGTTTA
TAAATATAAAATGTTTTGGATGGTTCAATATAGACTACATACAGACAGAAATGAGCAAAC
AAGCACATTAAAACATGTCTATATATATTTGATATACAAAAAAGTTTGAACATCTTATAT
TTGTAAACAGAGGGAGTACTTACAATTTTATCTTTCAAGTTTTAAAAAACATGATTGCAA
GGCCTTTGGTCCCTTCTTCTTGAACCTGCACAATTACAAAACATATGAAAATGAAACAAA
TTGTATTTCATCATACTATAGAAGAAACATAGGAATTCATGAGCCATAGGAGTTTTGCAA
AAAAGTTAAGCTGAAAGGAGATGCCCTTAACTAAATGAAAAATGACACATACAAGAAAGT
TGTGAACTCTATAATCTCACAAACCAAGTAACACGTACTGAATTCATAATGGGTGAAATC
CAATAAAACTAGAAACAACAACAAAAAGAAATCATACAAAATTCACTTGATTAAAAAAGG
CCCTTAAAACACACAGTGTGACAATAAAACATAGACTTGGTTATAAACATATTATCTTTG
TTTCATTTCACTTGTCACTTTAGAAAATCTATGTATATCGAGGAGAAATTATGAAGTGTT
GCTTAGACTAGAGGTAACGGTAATGCGTTGGCTCATAAAGTGTCATAAATCTCATGCATG
CATTGGCTTGCTACAACTCTGGCTTCTAATACGTAATGAAATACAAAATAGAAAAACAAA
ATACACAATGTGATGTAAATTAAACCGATAAAAGTACTTATAGAAAAGTATATCTATCCA
CCTGCCTCGCACATTTGGTAGTCTTCCATGCATAGAAACATTTCAAGGGTCCATCTAGCT
ACGTAATGATGGACCATATCAGTGTTGAAGAGCACTACAGAAATTGAAATCTCTTACGTG
TTACCACTCATGACTCGTGAGCTGGAAAATATCATGATTCAGTTTATGCACTAAAATCAT
GGATGTGAACTCTTCGTGGATGTTATTTTGGAGACACGTTATAGTTCTACATGGTATGTA
TTAACGTGGATTTTCCTTTTCCTAGTGGCAATTCACATTCATAGACAAAAGGCTACTCTA
AATGGACATGATACTACGAGCAAATGGGTTGTCACAAATTATAGCCACTGAAGCAAAATA
ATACTTGACAATTATCTTTTGGGGGTACACGGAGGATGCATAACATGCAAAGTCAGACAC
CACAAAAGCTCAAAGGACACAACACGAGATTAAAGGTGCAATGTAGATAGTGCTATTTTG
TTTAAGGTGGGGATGAACGTACTTGTTGGCCCTAGGGGCTCATGCTACATGAGTGGGGAA
GAGGGAAATAGCTTGGAGAAGTGTATCTCTGGTCAGGTGGGTAGTTCCTGGTGACGACGA
GTGAGTACCTCGATCCAGTTTGGATTGTGGTAAATGACATTCCCTAGAGACCTAGATTAC
CTGAAAGCACATATGCTCCCTTNNNNNNNNNNNNNNNNCATGACAACATACAATGTCTCT
TGGAGTAATAGTTTTATCTAGCTTATTTCAGATGTAATCCACGGAGAGTGTTGGCAAAGG
ATTATGAGGAGAAGAAGAAGAAGAANNNNNNNNNNNNNNNNAAGAAGAAGAAGAGGAAGG
AATAGGATTGGCCAAGC