Contig Data
morexGenes
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Map Locations of contig_297085 (5187 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_297085

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_46879 1 697 bp AK363561 Not available Available None
MLOC_46878 1 364 bp MLOC_46878.1 Available Available LOC_Os12g30780.1, FRAME:+3, EVALUE:5e-14, 13112.m03136 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_46879






CDS Structure of MLOC_46878






Contig Sequence (5187 bp)

>contig_297085 5187 assembly3_WGSMorex_rbca.fasta
TTCGCGCGGCAAGCCTGGCACGAGGCTCTTTCCTGGCTGCGCTTACCAGCCCCCACACCG
GAGCAGGATATCTCCATTCAGGACTGGTGGATTAGGGCGAGAGATGCAACACCACCATCA
CTGCGCAAGGCACTGAGGTCCACCACACTGTTAGTTCCATGGATGATCTGGAAACATAGG
AATGCGTGTGTATTTGATCATGCCACTCCGTTGCTCCCCGAGCTCGCGGATGGGATCAGA
GATGAGATGAGATGTTGGGCTAGAGCTGGGGACAAGGGGCTTAGGGTAGTCTTGCCCCCA
TCCTGGGATGTCCATTGAGTTGCTTGTAATCTGTTGTAATCGTCTCCTCTGAGACTGACT
TTCCCTCTTTTCAATACAAAGAAACGCACATCTCTGCGTTTTCTCGAAAAAAAAAGTACT
CAGTGTTACTACAGAATTAGCAGATTGAGCTACTGAACAAATAAATATGGCAATGTTATT
GCAATAATCAACACTTACTGCAATGCGAGTACCATCAATAACAGCGACAAAGTTCACATT
TATGGCATGCCTCCATGTCTTAGTTCCGTCGGATATATCATCATAAACTAATGTTAGGTT
AGCAATTCCAGCACAATTGATGCAGATATCTAATCCACCATATGTGTCTACATGTTTCGC
AAAAGCAGCAGCTAGATCACCTGCATATCAAATCACTGTAACTTCAAAATCATGGAAAAC
CTGAAGAGCAGCAAAATCGTGCTGTTATTTAACATTTGAAACCATACTACAAGTAATCTG
CTTGACAAAACAAATCAGAACACACCAGAAGAGTTTTTGTAATGCCTGATGTGCAAGAAA
ATAAATAAACAAAGCCCTGTTAAAGGAGATTTGACGCTTCTTCAAAGCGAACGGAAATAA
ATACCATACTGGTGCACTGGGTATTAAAACCATTTGATGCATTAGATACTAGTTTAATTT
CTGAAATACAGCAGAGATGGTTGGTATTTGATAGCTTTGCTTCGCAGTATTTTCAGCTTG
TACTTAGAAGGCAAAAGATTAGAAGTAACACCAGACATACATGATCTCTACAATTTTATG
GTCTTCAAATCACATTTAGAGTAATGCTTGACAAGTATACTGTATGAATGAAGTGACGCA
TTTCTTATCATACTTTGATTTGATGCACTTATCTTTCCAAATATTTTGGCATCAACAAAC
GGTTAAAAAGGTACTGACGCAAATTGACTGCTCTTTGCTTCCTTCCCCTGAAAGAACTCT
TACCTTCAACAGAAACATCACACTTGACGAATATGGCAGACGGTACTCCAAGATCTCCAT
GAAACTTTTTGTTTTCCTTTTGAACTAGCGAAGTAACTTCTCTTCCATTTTGTTCAGAGA
AATCGACCACAGTCACAAATAGACCCTTTTGTGCAAAAGCGATGCAGAGCGCTTTCCCTT
CAGAAAATAAAACAAGGAGTTAACGGTCGATATGTTAAATGCAATCTACTAAAATCATTG
CCCTGCACAGAATTATTTGACATAGTAACTGACAGGTACCAAGTACCGATACTATACGGC
TGCAAGTATGGATTGCCTGCTACCATGCTAGTAGTATCTCATAACTCTTGAGACATTTCT
TGCCGTGTACGGGGCCACGGGCACAACAGCCATATTACAGAATTTAGTTCTGTCGGTGTG
GCGTTCATAGTTCACTTTTCACTCTGGCAAACACAGCAGTAAATTGACTCGTTATTGCAG
CCGAAGAAGTGCAGCTGCATGTCCACCCCGCTCGCTCATTTGTACAAGCACAATGACGCG
GCAGCGATTATCCGATGCTTTCCAGGCAGGAACCCATCAGTTCGAGATCAGGTACTAGTA
CTAGCCGGCGTAATTAGCCCACCCCTACCCAGTCCCCACATCGAGCTATCACCAACAGGT
TTACACTAAGCAAATCCGTTCCAGCTCACAGGTCAGCCCGCAATCAAGCATCCCCAGCCA
GTAGCAACCGCGCTTGGCCACGCAGAAGAGCGGCAAGGGCGCATCAGATCAGAGCCAGAA
TTTCGGCGAAGACGCAGGCCCGCGCGCGGACGCGGGTACGGAAGAGGAAGGGCGCTCCCT
TACCGATGCCGGAGGCGCCGCCGGTGACGAGGGCCGACATGCCGGGCTTCAGCTCCATCT
CGCCGGCGCGGTGAGGGCAGACCGACCAGCTTCAGGCGAGCGAGAGAGGCACGGAGCGGG
ACGGGGTGGGTATGGAGAGCGCGGCCGGCCTGCGGAGCTGCCGAGGCGGGAGCTGTCTGC
TGGGGGAGACAGGGTCGTCCCGTCTGCTTCCTTCCTCCGTTTGATCTGTTTGGGAGGAGA
GAGTGATCCGATTGGGGAAATGACGGCAAGGCTCCGTGACCGGTGAGGACGCGAATGGGG
TGATCCAACGGCGCCACACGCGAATTCGTTGGGCGTGGCCGGTAAATGTTTTTCCAAAAA
TGCTACACATACGGACCCTTCCATAACTTTTCCTCACCGTTCCCTTCCCTGATTTTCATT
CAGGTGGGGTCCAGCTCTCACCCTTAATCCAATTAAAACATGCCAACTCAAGAATCAACC
TGTAAACTTAAGTAAACATCCCTAGGTGTAGCATTTCTCATGTTTTTCCTTTTCTTTTCG
GGAACACTGTTTTATGGGTTGTTTTATTTTATTTTTATTTTTATTTTTTGCGAATAAATC
TTGTGCATTACTCAACCTTCAGGGGTTGTTTGGATAGCCAGTTTATAGAGAACCGGTTTT
AGTTAAACACAATTTCTGTTATAACAACCTAAAAACTTGTTTAAATGATCCAGCTAAAAC
GGGGATAAATTAAACTGAGTTTTATAGAACCTAAAAAGTGAGTTTTTAGAAGAAAAAAAA
CGACTAATAGTTATATAGCCGTTTGGTACCTATGAGTAGATGGCAACGAGTTGTCTTCCT
CGTCGTGTTCCATGGGCCGTAACCTCACGGCAAGCTTCGCAAGCCGCGTGTTGGTCCTGG
GGCCCGTGGCAACGACTGCGATACTATCGAGAGCGAGGGGAAGAGACAGCCCTCGGTCTG
ATCATCCCATTCGCTCTTACGATCTAAACATGGTTCAGTAGTCAAAGCAACCTCGTCACT
TCCGTGTATCCATCGGACGGCGACACTTTCGGAGGTTTCTTAGGGACCGATTCAATGTGC
ATAGATTGACTGAATGCAGAAAGCCTTCCACTGACAGGCGATCGTGTTTTTCACACGATT
TCTCCTTACTCATGTCAGCATTCTCACTTTTGATATCTCCAGGTCTTGTCATCAAAAAAT
TTACATGATTGACACAATGTCCCGCTACTAACACTTGAAAAAAGCTGCTTTCAAGGTCTC
GTCGCTTCAATGAATCACTTGAGCCCTGAGACATTTTCGATGGCATGGAGCTAGACCAGT
GAGCTATTACGCTTTCTTCAAAGGATGACGAATACATACGTAGATTAGTACTTTCGCCCT
TCTAGGTAACCAACAGAGAGCACGTTGGGAAGCTCAAATCTGATTGTCAACATAATCTGT
ACATAATATAACTAACTGCTTCTCAAATTAAGGTCCACTAAATGATGTTATATTTTATTT
TTGATCCAAACAAGGAACTACATATGCTTATCTTAACAGAAAAACTAACTAAAACTGGTT
TTCCTAAACCTCGTTTTCCAAAATCTGGCATTCAATTCTTGTTATCCAAACAACCACTCA
GGGTTACAATCAACAAGACACAAGTGCTAAATGTTTTCCGGGCCAGAACAAAGCCACGCT
GCAGTACAATTGTCATGCCTAACATAACTAGCTAAGAAACACTACTAGGAAAAACCCTAC
CACTAGCGCGGGACATCTAGCTACCAGTAGCGTCGACAAACGCGCTACTGCTACGACGCT
ATAGCTATTTTTTAAAAGTAGCGCGCTTTATGGCCAGCGCTACTGGTAAAGTCACATATC
AGTAGCGCTACGAACCCACACGCGCTACTAATATGTGACTTTACCAGTAGCGTTGTCTTT
TAACCCGCACCACTACTAATCCCGCATATTTCTTTTTTGTATTTTCACACGGCTATACAT
ATTAATATACAACAACAATAATAATTTTGCAAAAAACAACATTTAGATAAAAGTGGATGG
GCGCAAGTGATCAAGTTAGGTTAGAGAGAAAATATGATGTTACAAATTGCAACATCATAT
TTTCCTCTAATTCACCTTGGTCACTTGCATCCATCCATTCTAATCTAATTTCTATCATAT
AACTTATCATCCTCTTAATCNNNNAACAACTCATCATCCTCTTAATCATATAAGAACTCA
TCATCCTCTTAATTATCTAACAACTCATTATCATCTTAATCATATCAAGTTAAAATGTCA
TAAAACAGAAAAACATCATAATAATCATAAACTAAAAAAGATCATCTATCTTGGCTAGCA
CATATTATTCTCTTCTAAGTAGAACCTATTACTCTCTACTGGGTAAAACAGCATAAAAAG
GTAAGCTTCACTCTATCCATTGTGAAGAATAGAGATCCACCTATCTTCGACATGTGGCAT
ACGTAAATCCTTCGCGTGTCCGCCAAGCAGTTGTCGGTGGCTTTTCATTAAATTGTCAAA
TCCTTTAAGTTTGAGGCTTTCACCCATTCTAGAAAGTGAGTATGCATTGTGGAAACATAT
AGGCCACCATGGTCGTAAGCTGATAACATTCAAATGATGACCTTCTATAATCATCAGTTC
AGACACAACCTTTGGTGGAAATTTCTATTAAGAACATAATAATAACATAGTTAGCAATCT
AGTTTTCCTTAAAAAAATTATGTATGCAAAAGATGGACTAATTAATGACACAATGGTAAA
AAATAATCTTATCATGATATCTACATGGAAATTATTAGGGTTCAACTCGTGCACTAGTGG
CACGTATTCAGAATCAAATTTTCCAATATCTTCATAATTGTTCTTATAAACATCAACATC
ATCAATAAATGAGATCGGATGGTTTTTCTCCAACCAAGTTAGATCGGAGCCAAGACTGTA
GTAGGTCATGCCTACTGTTTTTTGAGTTTTTTTTAAGAAGAGAAATAAGTTGTAAATTAA
AAATAAACAAGTTAAGTAGGGATGAACACCAACTATTTTTAAATAAACAATGCAAATCAC
TTAACAAATATGTTTGTCAAACTCACA