morexGenes - Barley RNA-seq Database

Contig contig_294196
Source Contig contig_294196
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_294196 (7388 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_294196

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_46683	3	2549 bp	MLOC_46683.2	Available	Available	LOC_Os03g47930.1, FRAME:-2, EVALUE:2e-42, 13103.m05168 protein expressed protein
MLOC_46684	3	1782 bp	AK368262	Available	Available	None
CDS Structure of MLOC_46683

CDS Structure of MLOC_46684

Contig Sequence (7388 bp)

>contig_294196 7388 assembly3_WGSMorex_rbca.fasta
ATAGTGAGTTCAAGGGCAGCAAACTCATCTACCATTGCATGCTGCCATTCCTGATGAAGA
ATATCACAGAAAAAAAAGTCAGCTCGGCAGGAGCCCACGCCTGCAAAAACCAAGGTGGTC
AATAGGCATACCGGGACGAGCATGAAGGGCATACTAAGGAGATGGTGGTGCATCAGGAAA
AGATAATGCCTCGCCAGGAGAAGGTTAGTTGGACTTAGCAAGCAATGGCTTGTAGGCAGC
AAACTGGGTATTGCACGACTCCATAACCTCATCATGATGATCAAGTGCATGCTTGTGAGT
GTCCTTAGGAGCCTTCTTTTTTTGAGCATCTTTCTCAGCAGTACCATGCGAGTACATGCA
TGACAGGGAAAGGAAGGCAGGCACTGCACCTTACCAGGAAGAAAATCTCAGTCACTGATT
GGATATGAAGGTGCACGTAAATGGCCATGCCATGGTAGTTGATACCATCGAAGATCACCA
GACGGAGGGGAACAGAGACATTGCCCGATGAAGAGCTAGAAGATGGCATTATTTTTAAGA
GCATCTACATACAGACAGATCACTCTGAAAATGGAGCAGAATGCCTGCTCGGCAGCCTGA
GGAAGAGGGTTGCAGCGGCAGAGCTCAGGAGAGCAGGAGCATGGAAGCTCAGCAGAAACA
GAGGGCAGATATGGCGTGGTGAAAAGCAGCGGCCGTCAGAAAAGAAACCGACATGGTACA
GATAGCATGGTGGCTGCGCACAACCATGGCGTGCAGAAGAAGACAGAGGAGAGGGAACGA
CCAGATCGATCTTAAAGGAGCCAAGTGAAACAAAAAAATCGAACCTTCAAAGCCAGCTCT
TCATACCATGATATGAATAATTACTTAATCTATTCCATGGGCTCTAGGTCTAATACATAC
ATGTACATGAGAGAAGATAAAGTAGGAATTCTCGGACAAAAGGAATATTATAAAGAGTAC
TACAACAATACAATTCTCTCTAACAGTTCCCACCCACCTGATTTCAACCTCTAGGATTGA
CATGGTGTGTCATATTTAATAATAGTACATACATGTGTGTTTGGTGCAAAAGTGTGCACC
CGTGTAACATGAGGCTCCTATACCTCTACAATAGTTGTAGGGATTGTAGTGGACGCCCAC
ACGCGAGTACTGTGGCGTATCAAAGAAGATTCATCTGAGACAAAGAACACGGCATGATAC
CGCCGTCTAGCCTTAGGTTGAAGGACTGTAAAACCACCCGCGCATGCGTGTATGCAATGC
AAATGAAAAAAATGGTGAACTAAAAGAAAATTATGGGCTCAAATCTATGTGCAGGTTAGA
TCAAATATGAAACACACATGAGCCTAATAAAAACAAGAGATGAACATGACAAGCTTGACA
AGAGAAACTATGCCTGCGAACTATTCCATGGGATATTTAAATATACAATTTGCATGTTTT
TATCATAGCAAGGCACATGCAGTCATTCAGGAACAAATGATAAGCAACCAGCAATGATGA
TGGGCTGCCTTATGCGTATATGTGTTGCAACATGCGGTGGTGAATAAAAATCAGACATAG
CATGCAGGAAGTGGTACATGATTGTATTACTCATCTTCACTGACATGGTAAATATTTACT
GTATAAAGCAAACAAATCCAGATCTATTCCTTGTTGAGATCAAAGGATTAGTTTCAAAGA
GGTTCACTTGCCATGCATCTTAGGTGCACATCAGCAAACCCAGATTCAGAAAAACAAACC
TCTGAGAAGTGCAGATGATAATCATTCAATTTCTTGTCCACCCATTTCTGAACTGGAGAC
AGGAAAGACTGAAAAAACGTAAAGTCCTGGCAGCTATCATCGGCATCAACAGAACTACGT
AGACTTTTCAAGTGCAAGCGTTCTTGTGGACCACGCTGTTCCTTCAAGGGTATCTTCCTC
AAATGCTCAATCACAACTTTCAGGAGTCCTTGCTCACCTGTAAAAACAAACTGTGTTGCA
GAACCTACATCAATTATCATACTATGGTGATGGTGACTTGGTTCATGAACTAATAAATTA
GTAGCATCCTACTGAACAGGACTACATGTTTAGTCCAGTATGGTTTATGCAAGAGCATCT
TTTGATCTCAAGAAAAACTAATGACCCAGTGGTTACTGGTTTTAGATATGACTCACCACT
TTAATGATAACCCTACATTATGACAGGCTTAACTTGAACTACTTTATATTATGAAAAGGC
ATCATTTCCATAAATGGTACAGGGAAAAGGGGAGTTTGCACTAAAGGTTTTTTCAGATAA
CTGTCTCTGACGAAAAGCCATCATTTCCATAAAATGGTGAAGGTAAAACTGGAGTTTGCG
CTAAGGTTTTTTTTTCAGATAAGTTTCTCTGACAGACTGACACTATGAAGAGAAAAGGCT
AGAGGTGCTGTCACTAAAAATTGGATAAGGATGAGAAGATCCTCCCTTGCTTTTGGCTCA
CTCGGAACTCTTAAAAAAAACTAGATGCCAGAATCCAGAAACACAACTGATTGCTGCCGT
AGAGATATCTAAGGCCCGCCACAGCAAAAGCACGAAATACTCCAAGAAGGATAAAACAGC
AACATCAACAAAGCCTTTAGTCCCAAACAAGTCGGGGTAGGCTAGAGGTGAAACCCATAA
GATCTCGCAACCAACTCATGGTTCTGGCACATGGATAGCGAGCTTCCACGCACCCCTGTC
CATGGCTAGTTCTTTGGCGATAATCCAGTACTTCCGACCGCTCTTGACATTATCAACACA
TTTTAGCCGTCCGCTATGCACTGGAGNNNNTGGAGGCCTGCGCTGAATATGCCCAAACCA
TATCAAACGATGTTGGACAAGCTTCTCTTCAATCGGTGCTACCCCGACTCTATCTCGTAA
ATCATCATTCCGGACCCAGTCCTTGCGTGGCCACACATCCATCTCAACATGTGCATCTCC
ACCACACCTAACTGTTGAACATGTCGCCTTTTAGTCGGCCAANNCTCAGCGCCATACAAC
ATTGCAGGTCAAATCGCCGTCCTATAGAACCTGCCTTTTAGCTTTTGGGGCACTCTCGTC
GCATAGAAAGCCAAAAGCTTGGCGCCACTTCATCCGTCCGGCTTGAGATAGATGTCAAAA
AAATACCAAGAAGGATAGCCTCTTCTAGTGCTTTACCTGTCGGAATAATACCCATGCATA
GCACGTATCATGAATTGTCTCTGTGATTCCTAGTATACGCCAAGTTGACTTGAGGAGCTC
AAGGATTTCTTCCACCTCCTGGTTGATAAAAGCAAAAGTGTGAGACGAATATTGCAGCCA
AGTGGGTGGACAGCGGAAAATGCCAAACAGGGATTTGTAGTACTGGCCTCTGTGAGTTTT
CCCTCATCTAAGGTGTCAAAAACACTGCCAAGCATTTTTTCATACAAGGCAGCATTCAGA
TGGTAACCATCAGCCCAATGACAAACCTCACCGGTAAGATCACCACGAGCAGGCCTTTCA
GAGAAAGATGTAGCAACTTCTCTCAGTGAACGTAGGCATTCTGTACGTTGGACCTCCGCA
GCAGATGGGGATAGGGACTAGCAAACAATACAACATCATAACCTCTATTTAGTGTATAGT
TCATATCGTGCTTATTTGAATAAATAAATCAACCATAAGAACTAACTGGGGTAACCATAA
AACCTCAGATTCTTCAATCTTTCTGAAAAGATTTCTTAGCTCATTGACTTTTCGACCTAA
CTCTCCAAATCCAACAATAGGATGGTTTATCAGGCCCTCCTCCAGCATGTTCAGCTAAGC
AAAGACACAAACAGACCTTATATTGTCAAGCCATGCAGGTATGGTTCAAAATTATTAAAG
CACAAATGGACGGCTAACCTGTCTTTTCTGCCAACGAAGATATGCCTTCATGTCAGAAAA
TTCAGCTCTAGATATACAGCACAGTAGTTCCAGTGGTATCAAGAGATTGTCCATCCGTTT
TCCAACTTTACCCACCATAGCATTGAGTAGCCCCTGTCTAGTCCTAATATCCATGGACTC
GGTTATCTATTCAAAAGCAGAGGGTGAAGGAGGTAAGCAGATGTAAGATTAGCATTCTGA
GTATCTTTATTAAATTTGGTTGTTCACAAAAATATAAAAAAGGAACAGTAACCTTAAACT
CAACGAGTTGTACTATATGCAGTTTGAAACAGGAAAAGGGATTCACAAGCTACTAATGTT
GAAATGTACAAACAGTCAAATATAATTTCAAGTGAGTGAAATAAATATATAGTACAAAAC
AACAGAAAACACAAAGGCGCAAATTTTGTCTTTCTATTCATTAACCAGGAACAGAGGTAA
GACAAGCCACCTCAAGTTGGGCTCTCAAGATTTCAAGCAAGCCAACTAAACCAGGTTGCC
GGTGAGTTTGCACTTCAGCACTTTCACTCTTACTACGCCCAAGTTTCCTCATTAATCTGT
GTCTCTTCTCTTTCTTCTTTTCTTTCTTTGGAACTATAAGCCCCCTATAAGCAGTAGAAA
TAGGTTAAGTACTATGACAATCTTGCAAACTGTTATCTTCTAATTAAAACACTATGCTCG
ACACAGTGAACTGCACAGGCCTACCCTGAAGCACCAACAGCAGCAACAAGGATTTCATAT
GCTGTTTCACGAAGATCATCATCTGTGATACCTGGAAGAGTAAGACAGACGTTGTTTTTT
AATAACTTTCTTTAGCCGATAGTTCAGAATTCAGAGTCAAACAAAGAGATCAACAATGTC
CTAGTTATATCACTAACTAAAGCAAGCGCCTTAACTTTTATATTACAAATTAACAGGTTT
AAGAAGTAACTGAAGCGAATAATGACAACCCAGTTATTGTTCCAATAACGAAAGTGAACG
CCTTCACGTGATTCAATAAACTAAAGAAAGCAATAGTGTATCACTGGCAAGTTATGAGGA
GACAACCAACAAATGCATGTAAAGGCAAAAGGGACAGATAAAAGAACATTAAAATCGTCT
GTAGTAGCAATAGCATGATAATTATTGTATCAGAACATAAGGCATGGCTAGTTAAGTTCA
ATCTATTATCAGGCATGCGATACTGATAGTTGCCAATTAATAACTATTACCTGTTTCAAA
TAATGGTAAGCGCAATGATAGATCATTGGCATCAGTTTGATGCCTCCGAGAAGCCCTTCG
GCTATCGAATTCACCTTCATCATCCTCAAAGTCTTCAATGTCATCTATGGTTAGTTCCTT
CTCGGTGGGAGAGTCCAATGATAGTGATTTTGGTAAGTTTGCAACTGATGATGGTACAGC
AATTTGTGGTTGTTCAACAACTGGTGGTGGTACCACAACTCGTGGTGGTGCAGTGGCAGG
GATAGGGGGTGGTTCTCTTGTTGGTGCTGATCCAGAATATTCAGGTCTCGTAAGTAAATA
GAACCCTTCGACATCTCCTGTGTTATCCTGAAAAAAATAAAGTTGAGGCATATGAAAACT
TAATGGGCGATGAATTTAATGACTCTGATCATGGTCTGCAAATAACTGAACTAAGCATGT
AGCCCAATGTAAAAATTTCGACACTGAAACTGGGAAGATTATATAAAATTGCACATATGA
GGAGCAGTTTGGTATCCATGGGCGTTCAGCAGAATGATTGGTAAAGTAAGACAGGCGGCA
CTATCATGAATGTTTGAAATTCCTTCATCATATCGTTCCTCCTTTGCCAAATGGTAATAT
TTAGAAGAAAAAAATACAATACATAAAGAAAGCATAAGTATACACTCACAACATATGGGT
AATCAAGGCTGTCATGATAAAGCCGGATGGCATCTCCAAGGTCAAGAGGATCCCCTAAAA
AATCAAAGGATCATCAGTACAATATAAGGAGACAAGTGAGATACTTGAATGAGGCTACAA
CTACTTCACCTTTCTTAGCACAATTGAGGACATAATCAACACTGACTTGATCGATATCCA
CATCATCCAGAGAGATAGCACCAGGCGGCATTACAACTTTCTTGATCAAGTTACCGGAAA
GGATGTAATTGAGTAACACATGGCGATCACGGCGATAACGTTGTAGCAGCTCAACAGGAT
TTTCTCTGGTCAAGTAGAAACATAGTGAACTTAGTTTACAACAGAAGCTTAACAGTCGCC
TATAAATGGAAGAATGCCTATTCTGAACCGATCATTACTCGTCCATATTTTGTGCAAGGG
AAACAAAAAAAAAATCTGAGGATGGACTACCAACTGCCACCGGCGCAATGAACCTGCAAA
CAAAACAAAAAATCCATTGTCAATTACTACATGATGCGGGAAGCGGATGGAAAATGTTAG
CTCGAGTGACGATGAAAATAGCGAGTGCACTGCAAATCGTGTACTACAGTTGGCACATTG
TGTGTGTCCAAAGCAAGCATGAACCAAAGCTAGCCGTCAGCTCGCTCTAGGTTTTGATAG
TTAAACCAACGGGCAAGATGAAGGAGAAGAAGAAGCGCGTACTGAATACCGACCGAGAGG
CTTCGGTGGGTGAGGGAAGGAGCTCGCCGGCGGTGGAGATCCAGGCGAAGAGAGGGGTTG
CTGAGATGGCGAGAGGTGGGGATATGAAGGAGGGCAAGGCGAGGGCCGAGGAGTGGCAGC
GGTGGAGAGATCCAGATGCGGGTGGGATGCGGCGGCAAAGATCCGGAAGGGACGCTGCTG
GGGTTATCGGGAAAAGGCAGCAGTGGAGTTCAGAGTTCAGGCCATCAACCGTGAGAGAAG
AGGACGAAGGAGAGGCCAGATGCGCAGGGCAGCAACGCGAAGACCTTCCTCGTTTCTGCC
CCCGTGGCCAACTTGAAATTTCTGCCGTCCCCCAGCAGTGAGGCTGCAAGTGAGATTATG
CGTGCCTATTTTTTTTAAAAGTAATACACTTTTTATTGAACTAGTCAAATATATTATGGG
AAACGTTACCATATATTTTTTTCAGAAATAATACACCTTCGGCCTAACCAAAGTCGGCTC
GCTCCAGTCGGCTTCACCAAAGCCGATTAGGACCCTGTCGGCTTTGACCCGGTTGATAGG
TCTCTCGGCTACAGCATCTCTGTACTACCCTCAAATCATTAAACCAGTTTTAAGGGTTGA
GAATTTGCATTTTTAAGCACTTTTAAGATTTGAAAAGCGAAGGCAAAGACTAGAACCCTC
GAACCCAACCCTTATAACAGCTCGGGGCGACGCGGCTGCCAGAGGCTCACCGGCGTTGCC
GGGGATGCCGAGGCCTCGGGAGGACCGGTGAGGGAGAGGCGGCTGTCAGCGGTGATGCGT
TGGAGGAGGTCGAGGGAAGGTGCGGTGGTGGTGCGGCTCCGGCACGAGGGCGTGGCGGCC
GGATGAAGGGTCGGTGCAGCGGTGGTGGCCGGCGGTGCAGCGCCGATGGGGCGGTGGCCG
GCGTTGCG