morexGenes - Barley RNA-seq Database

Contig contig_293100

Source Contig contig_293100

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_293100 (1677 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_293100

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_46612	1	1003 bp	MLOC_46612.1	Available	Available	LOC_Os06g06290.1, FRAME:+1, EVALUE:3e-18, 13106.m00645 protein GDSL-like lipase/acylhydrolase, putative, expressed

CDS Structure of MLOC_46612

Contig Sequence (1677 bp)

>contig_293100 1677 assembly3_WGSMorex_rbca.fasta
TATATTTGTGCATGTATATTGTGTTATTGCCCTTCCTCCTAGTCCCTTGTATAGTTGAGG
TAGATGTCCATATTGTACCTATATATACGTGCCTAGTGTATCCAATCAATATGAAGTGTT
ACACAGCCTAAACCTAATCCTCTAGATCAACATACCCATGTGCATAAATGTCTCAACTTT
TCGGATAAAGAAGGGGCACTTAAAAGTAAATAATTTGAGGGACCCGTCAATGTTCAAAAT
TCATGACACAAATGAGTATTGTGCCCCTCCATTCCATGTTAACTATCTCTCAAACGGATG
TATCTATAGAGTATTAGTGAAAACTGAACAGTTGTCGCAGTTTATAGTATGTGCAGCGAT
TATCCCATACATATTACTCCCTACGTACCTAAATATAAGTTCTTTAAGATATTTCACTAG
GTGTCTACACACGGAGCAAAATGAGCGAATCTATACCATAAAATATGTCTATATACATCC
GTATGTAATCCATTACTGAAACTCTTAGAAAGACTGAGTACATGTTGATGCGTTATATGT
TGCTTTTCTTTCTCTTATTTTGCATAGATATACAAGAACTTACACCAACAATCTGACATA
CACAACAATAAAGGTACGTGTTGGATTCAACAGTAAAGGTATGTAGAATACAAGTTATCA
GATCTCACCAATGAGTTGCGTCCACCATGTAGGGTGCTGGCCACACAGCCCCGGGGTACA
TGCCCGGGGGCAAAATTGAGAAAAATGACCCCTGAAGGAAAATAACTCACAGACTGAACC
TTCGGGGAAAAGATTTCACGCGTCTGACCTTTTTGTGTGACGCCTGACACCTAGGCGTCA
CACTACATTGTGTGACGCCTAAGCGTTCGGCGCCACACGCCCGGCTACGCTGGACAGGCC
GGCCCCATCCCCACACAGCGACGCCTAAGCCTCGGGTGTTGCACACTCTGTAGTGTGACG
CCTAACGCTTAGGCGCCGCACTGTGACTTATACAATCCTGTCCTTCGAGCTGGCCAACGC
CTAGCGCTTAGGCCTCTGCTCCTCCCCTCCCGCACAGCACGCCGTCTTCCGACCCCTTCT
CCTCCTCCCCGTAGCCGCCCTCCTCGCTCGTCGTCGCCGATGGCGAGGCAGCTGCAGCTG
CTGCTCGTGGTGCTGTGCGCGTCGTGGCTGGCCCTGCAGGCGGCGGCGCAGAAGGGCGCC
AACATGGCCATCACCGGCACCACCGCCATGGACGCCCCCTTCTTCCGCTCCCTCGGCCTC
TCCGACAAGATCTGGAACAACGGGCCCATCAGCTTCCAGCTTCAGTGGTTCCAGACCATC
AAGACCATCAATACATTTGTCTCCAATGCGTGTCGCTGCACCAGGGTGGCCTTCCCGTGG
CGCCTCCTACAGAAATCCATGGCGGCCACAAACGAGGCCCTGCCCGTTGAGCACATCACG
TTGTTCTGAACCTGACCGCCCAAGTTAACCACCTCCAATCGACGGATTCATCTCCATCTT
CTTCGCCTCCGGTGCCCCACATGATGGGAGTAGCAGCATGACTGCTCGGTTGCGAGCAGC
GGCAGGGAGCAGGGCTTCAGTGGTGGGGACTACGGGGGCGTAGAGTACGGCATCAGTGAT
GGTTAAGACAGAGATGGGAGCAGGGCATCAGTGGTGGGGGGCAGGGCGTCAGTAGTG