Contig Data
morexGenes
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Map Locations of contig_286088 (2006 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_286088

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_46147 1 1883 bp MLOC_46147.1 Available Available LOC_Os04g51590.1, FRAME:-3, EVALUE:7e-22, 13104.m05266 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_46147






Contig Sequence (2006 bp)

>contig_286088 2006 assembly3_WGSMorex_rbca.fasta
CACATAGTATCATGCTTTTTCTCATTATCGAGAATACCATATGAAAAGTATTATAGTACT
ACATGCTCTGCTTTATGATTCGTGAACTTTTGTAGAAGAGAACGGAAAAGGTGACAACAC
CATTCATGCCTTCACAACAGCAACCACCAAGAACCTTCTGCTCTTCTCTAACAGTTCTTA
TATATTTTGTTGTTTTCCTCTTGCTCAAGATAAACAAAAACTAAAGAAACCATGAGTTGC
ACGTACCTAATATCTTGAGATGAAGATAACAATGACGGTCATCGGCTAGGCTGCGTGCGA
TTTCACAGCAATAAAGCGAAGATGTTTGGCCTGTTTTGTTTCTTAGCTGTTTGCTTTATC
GTGTCACCGGTCAGCACAAAGCTTACTATGAGCAGAGTTATTTTTTACCTATCAAACTTT
TTTTTTATTTGTATCGAACTAAAATTGTTATAAACATATGCTACATCTTAAGCTCTACTT
GATCCATTGTGGAACTTGATAACATATGATGCACCCGACCATATTACCTTGATCACAATA
TAATTACGACACAAAACTCAGCCACTCATGCGTGCATCGCCTATCCTCTTACTATTACTA
CATGGCGCCCAAATCGGGAGAATCACCCCCTGCGACCATCGATGATCAGCTCACGAAACA
GAAAGATTGGCGCAGCGTAATTATGTGATGCCTTTCTATTCTTGCTTCCTATTATTCCTT
GATAAAAAGAAAACATGCCTAGGAACCTGCACTCCTACTGTATCAAACCATCAAGCCACG
AGTACAAACATAAGTCCAAATCCGAACACACACACCCAAGATAGCACGACACCCAGTACG
AGGGATTCTGCTGAGGACACAGCTCAACAAGCCCTAACATAAGAACAAAAAACAAAGACG
GAAAAGACCGCGATGGAAGGAGCTAATCCGACTCGGGTGGTGACGGAGGGAGCGGCGGTG
CCAAGCGGGAGGCCATCCTCCGGAGGTCTGCAAAGATGGAGTCGATGGCGTCCTCGTCCT
GTTGGCGGCTAAGCGTCCGCCAGAGCTGCATATAACAACACATTTTGAACACCGCGTCAA
TCGCACGTCGAAGAGGCACACGTTGAATTACAAGCTTATTTTGGACCGTTCAAAGCGTCC
ACGCGAGGACACCAATAACCAGTCATCTAATGTACCGTCCCGAAGGAGGGGAGGCCTGTA
TCTCGACGTAAAGGCCGGGCAAGTTGGTGTTACACCAATGTCCCCTAATGGTCTCGCGGA
GGCAGGTCCACATAAACTGGGTAGAAATAGACGAGAAGAAGATGTAGTTCGAGTCTTCCA
TAGTCCCACATAGGGGGCAGTGCCATCTCCCGGGCCATTTTGCTTGAGCACCTCCACTCC
GGATGGGACCCGGCCGCGGATCCACTACCACATGAAGATCCTAATCTTCAAGGGGAGCCT
GATCTTCCAGATCATCTCAAAGGGCTCCAGAGCAGGAATGGAAGCGATGGCCCGGTAAAG
AGACTTCATGGAGAACTTGTGTGATGGCTCTATATGCCACGAGGTGCGATCGGCAATCCG
GTCTACGTACGGTTCATGGAGGGTGGTGGTCACAAGGAGCTCGTGCCATGCGACGGTGTC
CGGGGGCCCAAATGGCCGCCGGAAAGCCAGGCGTCCTAAGTTAATAAGGGACGCCTCAAC
AAAGATCCACGGGTCCACCGTGTTGGCAAACAGGTTAGGGAAGCGGGCGGCAAAGGGGGT
CCCGCCCACCCACCGGTCAAACCAAAACAGGGTGGAGGTCCCGGAGCCCACTTTAATGGA
GTTCCCGATGCGGAGGACCGGGAGCAGTTGGATAACCGACTGCCAAAAATGCAAGCCTCC
CGATCTCTCACAGAAGGCCATGTGCTGCAAGAGAATACTCTCTACGTGTGTGTAATGTTA
GCAAAAATAGGCTAGAGGGTGGCTTTTCGTGGGATCAAAAGCTATAGTTTTGTGGGACTA
ACCGTTTGAGGGACCTGCTAGCTTGG