morexGenes - Barley RNA-seq Database

Contig contig_285266
Source Contig contig_285266
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_285266 (8534 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_285266

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_46083	4	6955 bp	MLOC_46083.1	Available	Available	LOC_Os02g01740.1, FRAME:-2, EVALUE:0.0, 13102.m00099 protein U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
MLOC_46082	1	327 bp	MLOC_46082.1	Available	Available	None
CDS Structure of MLOC_46083

CDS Structure of MLOC_46082

Contig Sequence (8534 bp)

>contig_285266 8534 assembly3_WGSMorex_rbca.fasta
CCATATATTGGCTTACTGGTTTTTGACATCAAACCAAGCATGCTCACAAAAGCAAGAAAA
AGAGCCTCCCTACAGGCCAGATGGCTCGGCTCTTAGTCACCAAACTAATTACAACCCAAA
CAAAAAGGAGGTTGTAGCAAAAGCACTCTATTCCCTTCTTAATTAAATTAATACATGTAG
CAAATCTTTTGCCATGTTTCAGAAAAAGGGGAACTGGGTCGGCGCTTAAAATTGACCCAG
TTAAAACAGATGGATACTCATCAGCAAAACATCATCAGGGTAAGAAAGGTGTTAAAACAG
ATGCATAACTCCATGCATGCCGCAACCAGTGCAGAAGACACAATAACGGACGGGTGCATC
AGGTTACAAGAAGACGATAATAAAATTCAGGTCACATAACAATCTCTGCATAATAAGAGC
CAAAAAAAGAACAGTATAAAAGCAAAGAATATCACAAAACAGCAAATATTGGGCCATCAA
CTTCTGGAATTTATTACTTCACCAACGTAACATATTATTCTTCTACCATGGGAATAGTGC
TAAATCCTTGTGGGTCAATTCACAACTCCACTAACAAATCAAACCAATAATTCACATCAA
AGTATCATGAACGACACATACTCATCACCAAAACATCATCAGGCCAATAAACACAAGCAA
AATCCCACAATTAGTGCAGATCCTCCTTTGTTGATACAAAAAAAGCGAAAACATGTGCAT
CAGGTTACACTGAATCAAAGCTAAACTTCAGGTGTTACATTACAGACAAGAAGATGATAA
CAAGTTTCAGGTCACATAATAATCTCTGCATAAGAGCAGGAAAAAAAAGGTATAAAAAAG
AGTTTTTGGTGATCTAAATCAGTCACCTCCAGCTTCCTTGATGTCGACGGTGAACTCGTA
CTCCTGGTCACAGCCGAGGTAGGAGTCTGACATCAGGTAGATCATGTAGTCCTTCCTCCC
TGTCTCGGTGGCGGCGGTGAACTCAAGCTTCACACGGGCCCTTTTCTGGAGGGTGACCCT
CTTGATCGCCAGCAGCTGCTTGGTGGAGCTGTCGCCGACCACCAGCCACCAACCTTCCTC
CTTGGTCTTGGGGAACCTGGGGGCGTGCACCGGGCCGACCTCAGAGTTGGGCAGGTTGGT
CATGTCACGCTCCAGAGTCACCTGCAAGGTCACGTTGTCGCCGGCCCTTATGTCGTCACC
CTCGCGGACTTCATAAGACATGTCGACGTTGGGGAACCGCTTGAAGAACTCAACGATGTC
CTGCAGCTCAGAGTTTGACAGCTGCAGCAGATCCCGCATCTCATCGATGCTCATCTCAGC
CAGATCAAAGATACTCTCTACAGGTTTCCCTTCGTTTTCCTGGCATCGCCGGGCCAGGTC
CCTGGTGAAGTGTGGGAGTTGGAGCAACACAGAGTCACGATCCCACATACCTTGCGTCAC
CATCTGGCTCAACTCCATTGCATTCAGAGCCAGAGTGAGCCATCCGCTGCTGGAGATGAC
ATCAACCATCGCCAGGAGCAGTCTATGGGCGGAAAGGAGGATCTCCCGCTGGTCTGCTGC
CAGGTTCCCTACCACCGTGTGCCTTGCAAAGTGGGATTGCAGCAGGGCGTTGGCCTTGAC
ATGTGGATCGCCATACTTGGGCTTGTCAATAGAAAACCTCTGGTGACGGACTAGCCTCTC
AATGTATTCCTCTTCGCCTGGGCGACTTGGAAGCTCTGCATATTCTGATGCCGAAGCTAG
AATTTCCAGGAGACCTTTCATCTTAGTCTTCTGAGTTAGCATCGAACTGAACCGTTCGAT
AGTGGTGTAACTGATGTAGTAGTACGCAGCAATGAGACCAAGGTTGAGCGGCTTCAGGTA
CATGTCCTCCTCTACAGCCACACACTTGCTTGACTCCAGGTCATTCAACACTGTCTCGAT
TAGCTCAGAAAGATGATCTGACAGATGCCTGTGACTTACACCCTGCAGATTGTAGTAGTT
AGGGTTCTTGTTCAGCCGCCTGTACATGAAAGTCCATGTAAGATAGTCCACTGCATCTTG
TTTGTTTTCTACAACACCCACAACAACCTCAGCATTCATATGGTCATGCAAGAAATGATG
GAGATGACTCTCCACAGGGAAGGCCTCAAAAAGGAACTTCTTGTAGTACTCTTTCCGAGG
TGCATGGCACAATATAACGCATTTCCCAGAGTTATCTTGAAGAGGCCTGCTAGCATGACC
CATCATCTGCAGCAGATCAGTGATTGGATAATCAGTATGAGCACTCTCCCGGCCATCATA
ATACTGGGTTCCCATCACAACAACTAAATGAGCAGGCAATGATCTCCCCCAGCACATCGT
GCTGCTTGCAACACACACTTGGATCCTCCCACCAAGAAAGAGCTGAGTCACAAGTTCCTG
GTCAAGGTCACTAAGACCCTCATGCAAGTAGCCCACACCACATCTCAGCGTATTTTTAAG
CGTTTCTTCATTGACACCTCCAATGAAAGTATCCATCTCATCTTGGGACCCAAGAAGGAA
TGGTGTACCGGCACCCTCAGCACTTGAGTATGCACACAGGTCCAATGCAGTCAACCTTGC
ATGCTTCCGTGTCGGCACAAACACCAGGGCAGGCTTACCACTCTTTGCATGTTGAGTGAT
AGCAGTGTATGTTGGCTTCGCCATTGCTTGCATTCTTGCCTCAAAATTTGCTATATCCAC
ACCCTGAATGTGTATTTCCAGTGGAACTGGCCGCACTGCTGGGGGGAAGTTGAAAAGACC
ATGAGCAGTAGCGCCAATCCATTCTCCAAGATCTTTAGCATTTCCAAGTGATGCTGAAAG
GGCTACAATCCGGATGTTAGTGCCAATATGACTTGAAATACGCCTCATCCGAGAGACAAC
TATTTCCAGGACATGTCCCTTCTCAGATCCAATTAGATGAAGCTCATCAACAATAAATAA
GCTGACTTGCTGGACAGGTTTCCGCTGCTTCCACCGACGAGAAAGTGCATCCCACTTTTC
AGGAGTACTAATAATGATCTCCCCTTTGTCAAGAAGTTTCAAATCAGCTGCAGTTTCGCC
TGTTAGCTCAACTACACGGGCAAATTCACCAAATTTCTTTGACCAGTCTCTGTATCTTTC
TTTGGCCAGAGCCTCAATAGGTGCTATATACACAACACGCATGTTGGTTTCACCAGATAC
AGCCTTCTGGTGGTTCCTTAGTATAGCAAATTCCGCACAGATAGTCTTCCCACTACCAGT
TGGTGCAGCAACCAAGACACTGTCGTCACTATTATACAAGACAGTGAACACTTGAGTCTG
GATGGGGTTGAAATGTTTAAAAGCACTATAAAGACCTTCATATCGTGCATTCCTTAATGC
AGTGACAGGTAGTGGCTGCAGATCAAGCAATTCAGTTGGTGGAGCATATTTTTCTGGAAG
AATCAAGTGCCTAAAGCAAACAGGGAGAATCGTCTGAGAACCAAGCCACTTGTCAGATAC
AACACGTATAAAATACTGAGGAGGCAGTGGCTCATATATCGGCACTGTAAAGTGAAGTGT
GTGATCTTCATCCACGTATTGTTTCTTAAGCATGAAGTACTCATGGTGAAGAATGTACTC
TCCATCATTGTCCTCAACTATAACCCAAAAGGGCTCAACATATCCATGTACCTTATCATC
CCATAGGAAATCAGGCGTTATAGTCAGTTCGAAACCCAAAACTGTGCGAGTAATAGGTTG
AACATGGGCAGAAAGGTTCAACTTCGGCAACTGGTGGATGCACCTGTGCAGCTGCTTCCC
CATCTTTTGAAACCGGATTAGTTCACCGATTTCCTGCGATGACAGGTCATAGTACCTCTC
CCAGGCCAATTCTTTCTTCTCCAGTTTCATCAAAATTTCCTTTGGAATACCAGGAAACTG
GCGCAAGGGTGTTTGGACACTCCACATCTGCTTATCAATCATCTTGCAAAGATTCAGAGC
CTTCTCTGCTAACTGAGCCCATCCCCTCTTCAGAACTATCTCAAAAAGTGCTCGTAGAAG
TCGGCCAGCACTCTGTAACATTGAGAATAAGAGTTGTAAGAATACTAGACAAAATAAGCA
AGCAGTTCAAAGTTCAAACTCAGTTATTGTATGGAACGTAGAGAACATGTTACCTGTCTG
ATGTAGACCATATCAGAACCAAGGGAGAGGCCCTCCAGTTTCAACCTAGATATATATGCT
TGCAACAGCACATTGATCTTTGCACTGGGCTCATCTAAACTCTCTTTTATAGGAATTGGC
ACACGATCCAAAAGCTTTGCCAGCTCCATCTTCTCATCTTGTCTGACACTAACATACTTA
AACTCTTCACTCAAAGAGAACAATCGACACAGCTCAATATCACCCATCGTGGGCTTCAGA
TACTCATTGTACGTCGATATAGTCCCATGACTAATATAGTAATAACTGGCAATCCTTCCA
AGATCAGTAACCTGAAAGTATCCTGTTTTCCTGTCGTACTTTATCAAATTATTCCTATCC
AGCAAATTTGCAGCGGAGTGCACCTGAAGCAGCACACCAAGAATCAGCAGTGGAACAGCA
AGAAGTACAAAATCAAGAGAGCGTCTAAAGAACAATATTGATAATGAAATCATAAGCTAA
CTGCCAACTAATTTTACTCTGATATTTCTCTAAGATATGGGACCAGTATCAAGATGCCCA
TATAACTTCCAAATAAATTAATAAGGAACTCATCCAATGAAAAGCAAATAGCTGTGAGTT
TCTTTTCCTATAACCATAAAATACCCAATACCACCTTACTGATAGGATGAAGCCTATTCC
ACCTTCATTTTTCCCAATTCTAAAAACTAAACTCAAGCAAATGCGTGCTGTATTACAAAA
AATTATCCATGATAAATTTTATATCTACATGCCTACCCATATTTGACTGTTAGAAAAATT
AGAAACAAATTTCCGTTAGAATGCCACATTTGTCCGGGCTATTATGCTATTACTGATACA
CAGAAATCAAACGGATACTAATTACCAAAGAGGATATTTGTTTAGCAATCTACAAAATGG
GCAACTGCAGTGCATCTGGCATAAACCATACTGAAGAAACAAAAGACTAGTACGAACACA
AGACACGTTCCCCTGGATGCAATTGCCGTAGTCGGGTAGAAACATGTTGGCTATACTATT
CTCCGCACATAAATACTGAACACCACAACATACAGACAACAAATTTAACAATTGATTATT
TACAAAAGATTATGTGCCCATGCACAACATCGCCATGTATAGCTAGTCCATATATGTAAG
TGCAACGGCTGAAACTATGCTTGAAAATAAATCACCAGGATGATGGGATTATGCAGTTTC
AGAAAAAACAGAGTATAGCATGTACTTACCAAGTCAGCTCGCCTCTCATCTAGCGTTTTG
TCCGTCTCCATGATATCTGCTGGTAAGCCATACAGTGTTGGATTCCGGAGCATCCGGATG
TAGAGATAAGTGTAGCCAAGCCAAGAGCATGCTTCCCGAGCATTCTGAATAGTACCCAGA
ACAATCTCTGCATTTAACTGATCTGCCAACTTGGATATGAACTGACTCTCAATAGGCAGC
TGTTGATTCATAAGGGAGAGGTAGTATTGCAATTCACTGTGGCCAGTTAAGATTATTCCC
TCTCCGTGTGTGTCATACTGAGGCCTACCTGCACGACCAAGCATCTGCATGACATCCAGA
GGACTTAATTCTGTCCAAGCACCTTTTTCCGGATTATAAATCTGTGTGCCCTTTATAATA
ACAGTATGTGCAGGCAAGTTGACACCCCATGCAAGGGTGGCTGTCGAAACAAGAACCTGT
ATATGCTTATCAGCAAAAAGTTCCTCAACAAGTTCACGGTCTACCCTTGCCATCCCAGCA
TGATGTATAGCAAACCCATACGGCAAAAGGTCTTTAAGATCACTGCTTTTGACAATATCT
GTATGACTGCCAAGGATCTCCTGGCTTGCACTCTCATCCTTCAGAAAGCGAGTCAATGTA
TCATTCGCCAAGGCAGTGTCTCGGATTGCTCGAGCAGTTTTCGATGTCTCCTTCCTGGAG
TGCACAAAAATAAGCACTTGATGCTTACCAGCAGAAGCCATCACTTTCTCATAACAGATC
TCATTCATCAACTGAAACCTCTGCAGTGGCTTCCTCACAGTGATCCCAATGTACTGCTGA
GCAAGAGGGCAAGGCCGGTAACTGTTGTCAAAATGGAAGAGACCCTCAGAGCGAACACGC
AGGAATACAGCAACATCTTCATAGTTTGGAAGAGTTGCGGAGAGGCCAACTAGGCGAATA
TGTTCCTTGGTCGTCTCAATCTGCCGTACTGTTCTAGACACAATACTCTCCAGGACAGGC
CCTCTGTTGTCATGAAGCAGATGGATCTCATCGATGATCAGAAGCTTTACCATTTGAGTG
TATGTTCTGTCCCCAGATTTCCTCGTGACAATATCCCACTTCTCAGGTGTGGTGACAATG
ATCTGTGTATCATCAATCTGTTGTTTTGTCAGGTTCTGGTCTCCACTGAGCTCCCTAACA
TTAACATTGAAGTCTTTAAGCCGTGCCGACAAGTTTCCAACAACTTCAGCAACCAGAGCT
TTCATTGGGGCCACATAGACAATTTTGTACTTGCTATTATCAAACTCACCATCCTTCATA
TGCAAACCTATCTGGTGAAGAATTGTAAGCACAGCCACATTGGTTTTACCAGCACCAGTT
GGAGCACAGAGAAGGATGTTGTCTGGTTTGAACAGGGCAGTATCATAAACCTTGCTCTGG
ACCCTGTTCAGTTGCTGCATTCCAGCAAAAGCCGGTTGTGCCCACCCTGGGATATCAGAT
ATCTTCACAATCTTCTCTCCAGTTCCATATGGCCTAGGTTTCAACGCTGGCACATGGACT
TCCTCATACCCCTTATGAGGGGTTCTGAACGATCCCTCGGGAAGTTCACATTTCTTGTTG
GCCATCAAGAGACCACCTTGGTGGAAGGAGAGGCTATCAAGATCAAGCAGCTGCCTCTGG
CCTTTTAGCCATCCACTCTCTGTATCCCGCTCAACTGCCCGACGCTCCCTTGGACCATCA
GTGCCAGCACTGTCATTGTTAAGAAGCCTCTTGGCCTCATCCCTGATACTTTTCTCCAAG
TTTTTCTGCCTCTCCTTTGCAGAGGCTCTCGTTGCATGTAGCTGCTCCAATATTGGGGCT
AAGCTTGGGTCATCCATCATCTCTTCCTCTATCTTCTTCCGCTCTTCCTGATCTTCAGCC
CTGGCTAAGCGGGTACACCAGACTATCTTGAACCGGTTGCGCAATACCAGTTTAATGAGA
TCGAATTTCTCATAGTCCAACTCCATGACAAGGCGATTCTCTACATCTCTGTCATCACCC
ACAGCAATTATCTTCAATATCTCCTCGGCTAGCTTCTGGCTCTGCTGGGGATCAATATCT
TCATATGCTTGTGTTATCTTCCTCTGCAGCCAGTAAGCGTCAATGTCCTGCACATTTATG
TTGAGCCCCTCGTTGGAGTTCTGCATATCATCGTCATCCAACTCGCCACCCATCTGCATA
CCTCCAGGACGGTTCAACTCAGCCACATCATCATCATCGTCATCCAAATCATCTTGCACC
TGATCCAGGCAAAAACGTTGAAGGTTATACACACAAGTATACATATGGGATGTTCCAATC
AGGAACAGGCAAGAGAAAGTGGAACACCGTAATACTGCAAGGTTACACGCATATGTATAC
CTGATCAAAATCACTTTCCTCGTCATCTTCATCCTCCTCGAACTCAACAGCAACTCCGAT
ATCATCATCCATGGTAGCGTCCCCACCATCACCAGAAGGTACGGCAGCAGGGTCGCTGGC
GTCGTGGAAATCCGTGATGAGCTTCCCGATGGAGACGAACTGGTCGAACATGGCGCTGGA
GATGGGGTTAAGCAGCTTCTCGATCTCCTTCTTCTTGTCAGGGTTCTTGATCTTGTCGTT
CTTGAGGACGGCGAGCACCTCATCGGCAGCCCCGCCGAGCACGTCGAGCGGCTGGCCGCC
AAACTGCTGCTGGATGACGCTGAGCATGGCCTCGTAGGCGGCGCGCGTCTCCTTGGTCTG
GGGCTTGTAGACGACGTCGTCGGCGAGGGAGAGCACGCTCTCCTCGCGCTGGGCGGCGGC
GGAGCGGCGCCTGCGCTTGCGGGGCTGGTCGGCGTCGGCGTCGGCGGAGGCCGCGTCGCG
CTCCTTCTTCTTGCGGGACTTGGTGAGGCGGTCCTCGAGCTCGGGGGGCTTGGCCTGCAC
GGCGCGGTCCCCGAAGCTCCTCTTGTCGATCCGGCCCCAGAGCGTCTCGGGCTCGCCCGT
GGGCTCGTGCGTGTCCCGCGGGCGCGAGTCGGTGGTGAGCACCAGGCTCGAGTTGGCGCG
GTACTCGTACTGCTTGAACCGCGCGTGCGCCTCCGCGCCGCCTCCCAGGTTCGCCATCCC
GCCGCTGCGGGGTCAAGGAGGAGGAGGGGGAGCGGTACGGCGGCGGCGCGGGTCCTGCAC
TCGGGCGTGGGTGG