morexGenes - Barley RNA-seq Database

Contig contig_28

Source Contig contig_28

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_28 (2409 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_28

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45673	2	870 bp	AK358552	Available	Available	None

CDS Structure of MLOC_45673

Contig Sequence (2409 bp)

>contig_28 2409 assembly3_WGSMorex_rbca.fasta
GACGCCCCCGCCTCCCCTCCTCCCTCAGGTCCGCCGCCTCCAGCCCCCTCTTCGCTCCCC
GCTCTCCAGATTCTAGATTGGGGCTGCCCTCGCTCCGTAAACCTCACCACGCGATTTGCT
ACTTGCCTACTGTCAGTTTTTTGTCTTGCTATTATCTATCCGATATGCTGTATGTGGAGC
TGAAGACGCCGTGTGGTGAAGTGGAATGGAACAGTGGGTGATTTTTCTCCCGTGGTTGCA
GATCCTGGCAGGGGAGTGGAGAACCTGGTGATCATCGGTTCAGGCCCCGCAGGGTACACC
GCGGCCATCTACGCCGCACGGGCGAACCTGAAACCCGTCGTCTTCGAAGGTTACCAAGTC
GGCGGTGTTCCCGGAGGCCAGCTGATGACCACCACCGAGGTGGAGAATTTCCCTGGGTTC
CCCGACGGCATAACCGGGCCTGATCTCATGGACAAGTAAGGGTGCTCGGTTTCTGTATTG
AACTGGTAAATGTCTTGTTCGCCTACTTATATCATCCTGGGGTTATGATGATTTATACCA
GAATGCGGAAGCAAGCGGAGCGGTGGGGTGCAGAGCTTCACCAAGAGGATGTCGAGTTTG
TGGATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGTGACCGAGAGGTAAGCACTTTGT
GTTCTTCCTCTTGCTCTGCCATAATATATTTTGGGTTCTGAACTTGCCTCTTTTCACAAG
ATAATGTTGTATGTGAGTTTTGTGACCATTCAATGGTTAGTATTACTGTGATGTTAATCA
AAACTAGGATCTGTTTTAAATAGAGAAGTAACAAAGCAGAGCTAGTGAAGAAAGTGTAGG
ACAAATAATGCAAGCTCTAATCAGAGCAGAATACTGTGTGCTCTACTTGTTTAGGTCTTT
GTTCACTCTATTGCTCTATGTGTATGACTCGACTCTTAGTTGTGCTGTAATTTGTCTTTG
TATATGCATGTTGATAGCAAACCACCTGTTATTAGTTTATAGTGCAGGCGAATTATTTTG
CACATGTTTTTTGCTGCACTAATCTTAGTGGCATATATAGGTGAAATGTCATAGTGTAAT
CATTGCAACTGGAGCTACTGCGAAGCGACTTCGATTACCTCGTGAAGAAGAATTTTGGAG
CAGAGGTATCAGCGCATGTGCAATATGTGATGGAGCATCACCTCTGTACAAGGGTCAAGT
TCTTGCGGTCGTTGGAGGTGGAGATACAGCTACCGAGGAAGCGATATATTTGACAAAATA
TGCGTGCCATGTTCATTTACTTGTTCGAAGGGACCAACTACGAGCATCCAAAGCTATGCA
GGACCGGTAAGGCATTCTCCAAGTCTTTTCCCTATAAAATTATATCCTTTACTGTGATAT
AAATATCAAATAGTCTTGTTCATGTAAATCTTTCGTCCATGGATTGTCAAGATTTCACTT
AATTTCAGTGTTAGCATCGGTTGATATTTGTTAGCTTTAACGACTGTAGAAGGAATGCAT
GATTTTTTTTTTCCACCTTTCATCTATTGTAAATATTGTCAACTCATTCACCATTCGATG
ATGGCATTTAATTGCATGGTAATATGCTGAGCCACCACTTTAAAATGTTGGTTGCATCGG
CACAATTGTTCTTCGTTAATACGACATTTTGTGCTTGATGCAAACTAGGCCTAACCGCAA
CTTGGTTCGTATTGGTTCTTTACCAGTTTAGATACTCAAAAACAAAATATTGCCAGAGGT
CCATAGAACTCGAGGGCTGTAATTTTTTTGGAACTTGTCTGTAGATGAAATTGTTAAGTT
CTTTAAAGGATGTTAGCTCCTCTTCAGTTGCATGATATATTAATGAAGTAAAATTTCAAT
TGCCTGGATGTTTGGTTAACAGGTTGATTATGGCGAATGTTTCAGAGTACTCAACAACCC
CAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCGGCAATACCAAAGGACA
GATGTCCGGTATTCAGTTGAGGAGAATCGATACTGGAGAGGAAAAAGTTCTTGAAGTGAA
AGGTCTATTTTATGGGATAGGGCATACTCCAAATAGTCAGCTGCTAGAAGGTCAAATTGA
ACTTGATAGTTCTGGATATATTTTGGTTGAGGAAGGCACGGCAAAAACTTCAGTTGATGG
CGTATTTGCTGCTGGTGATGTGCAGGTAACTTCAAACCTTCATTCAATGTCTGAAATTTC
TACATGATTGTAAAGTCTTGTCTCTTGAAGAAATGAGGACTTAATCCTCCTGCAGTTCAT
ATGTGCTACCACCTCACCATGTTACTTGTTGTAGCATGCTAGCATGTCATGTTTTGATGA
CCCTGCATCTAGTGTTTGGAAAATTCCTCAGTGAAAGGCAATATATTTGTTTTCTAAGAC
ATAAGACTT