morexGenes - Barley RNA-seq Database

Contig contig_278825
Source Contig contig_278825
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_278825 (5807 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_278825

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45533	8	743 bp	MLOC_45533.1	Available	Available	LOC_Os01g68810.1, FRAME:-1, EVALUE:2e-16, 13101.m07501 protein expressed protein
CDS Structure of MLOC_45533

Contig Sequence (5807 bp)

>contig_278825 5807 assembly3_WGSMorex_rbca.fasta
AAGGGAAGGACAGACGAGCAACAGACGGCAGGATAGAGCAGTTTCCCCTTTAGTGCAAAG
GGGCAAGGATGTACCAGGGTTCCAAAGGCATCTTGCAAAGGTTTCCCTTCTGGTGCAACA
AGGCCATCAAAGCCCGCCAGCAGGACACACGTCATCCCCGGGCCCGTCCCTGCAGCACGT
GCATCTACTTTGTAGGCGAGGACCACCTTTGGGCAGGGGAGCATGTTCCCTTGTCCACTT
TCGAAATTGGCCGCTATGGGATCCCTTCCCGCTGAAACTATAAGGGAATTGGACCGGCAC
CACCACTATAAATAGAGGATAGGTTGCTTCATAGAAGGGGACACCCGATTCATTCACCCA
CCTTCACCCCACTAAGGCTGCCTAGCCTCAGAAGGCTGGAGAACCTGGGTAAACTATCGT
GTTTTGTGTCTTCATCACCATCGAGTGAGTTCTTTGCTTTGGCCGTCGAGTAGCATGCCA
GGTGAACCGAAGCTGTTATGTGGACCCTGCACGCGCCCCTGAGTTCGAATCCTTAGGATT
TTGCGGAGCTTGAAATCCGACAATGAACATTCTCAATATTTTGATATGAATAAGGGCTTC
ACTTATATGTGCAAACTAAGTTGCAATATTTTCATGCCTTCTACTTCTTGTGATAATGTT
TTGTCTTTATATTTCATAATATATGAAATGTACTTATGTATACATGTGTCATATGTGAAA
AAACCAAGGAAAGTAAAAAATGTATGACATATACATATACAACATGTACACCTTGTCTCT
TTTGTTAGCCATATATATCAGATTAAGCAACACCGAGGACGGCTTTGTTTTCAAGAAGGG
GAGGATGACGAGGACATGGCTACCTTGGATATGATCACAAATATTGAATATGCATACTTA
TTTGAGGTGATTCCCAATACAAGTTATGCAGTAATTTAGTTATGCTATATAGAACAAAAG
TACGCCACCTTTTTCTTGTTTCATGCCTAATTGCATAAATAGCGGACACTTGTACAATCC
ACATATGAAGATAAGGGTAAAAGAGGCATTTAGGAAGTACTCTCACATCACTTTTAGCCC
AAATGAAGATAGACTCCAAGTCTCTCACATTTTGGACTCAAATTCGGACTACATAGGCAT
ACCTGTCTCAAAATGCCAAGAACTTTTACATCCGGGCTGTGAATTGGTTGATTCATTTTT
TGTTAGAAAGTATATTTCATGTGCTTTCCAACCCAATAGGATTCACTTTCAAATTCGTCC
GGATTGGGGATATATTAATGAAACAATCCGGCGCTGTAGCAGAATCCGAGTCATACTACA
AGACCAAAGGTGTTGCATCACCTCCAACGGGCCCGTCGGCCTTGTATGACCTAGGGTTAG
TTTTAGGATGACTTCGGATGTCCTCCCACCTCCTTGGTGGCCGCCCCTTTATCCTATACA
AGTAGATCAATCTAGTAGATTTTTCCTTGGGATTTGTGTAGTTAAAAGTTAGCCACTTCG
ACATCATATATTTTGTTTGTGTCCAATGACCATACCAAAACCGCTTTTGGATCCCCACCT
TTTAGACTACTTCATCAATATTCGCAATATTCACATTTCTTGTTCTTCGATTGCTTGCAG
GAAGAGACCTTTGGGGTCAGGTTGATCGTGCTCGGGCGTGGTCAATAACCACTTGGATTT
GGTTGAGCGATTGCTAAGGCGCAACGTCNNNCATGTTTGTAGTCGGATCATCAAAGTTGT
CTGCACCAAATCAATAGTTATCATCTCACCGGAAATATTGGGACCCTTGCCTCTATCAAT
GTTTTCCACCCTTATCTCGAGCCAGTTTGTATTTAACCTTCATACGCTCAATGTTTTATT
TAGTTACCTCATGCATATTTAATATGAATTCAACACGTTGTTTAGAATCACAATTGACCT
TCTTCGAATATGGAAGAGGCAACAAATCAATAGGTGGACGAGGTATGAATCCATACACAA
TTTCAAAAGGGGACATCTTAGTAGTAGAATGCAATGAACGATTATAAGCAAATTTAATAA
GAGGCAAACATTCTTCCCACATTTTCAAGTTATTCCTGAAAACAGCCCTAAGCATAGTAG
ACAATTATCTATTGACTACTTTCCATCAGTTTGGCATGACATGTAGTACTAAAAAGCAGC
TTAGTCCCCAACTTAGCCCATAAACATCTCCTAATGTGGCTAAGAAATTTAGCATCACGA
ACTGAAGCAATTTTATTTGGCACACAATGCAAGCGAATAATTTCACGAAAGACCAAATCA
ACAACACTAGCACCAACATCACTTTTATGACATGGTATAAGTTGTGCCATTTTTGAAAAT
CTATCCATGATAACAAATATACTATCCCTCCCCGCCTTATTTATTTGAGGTAAAACTAAA
AGGAAGTCCATAGATATATCCTCTGAAGGAAAACGAGGTACACGCAAAGGCATATATAAA
CCATAAGTATTGAGCCGTGTCTTAGCTTTTTAGCATGTAGTGCAGTGAGCAACAAAACAC
TCAACATCCCTCTCATCTTTGTCCCAAAGGAATGTGATATAGGGTGGAACCCTAGTGTTG
ATCTTCTTCGCACTTGGAGGTGGAGAGGATGGAAAACGACATGAACACGAGAGGGAAACT
GTCAAGACCAGTTTCAATCACACATCCACCAATCCCATAAACACACGAGGATACAAGATT
CAAATCCAACCAGAGGAAATAGTAAATAAGATAGTCCTTGCCACAAGGGGACCTTGAATC
CTAGAAGGATATTCCCACAAGGGGGCATTGGACATCCACTAGGGATCTTGTGACATGGAG
GCCTTCATCTCCATGGGAGAGGTAGTGGAAGGAGACAAAGCTCTAGTTCATCACATATGC
TTTGCTGACCCTAATTCGAAGCTAGGAGACGAGTACTTATAGTCCAAGGGGTAAGTTAGG
GTTACATGAGTCATGAATCTTCCTCTTGTGTTGATGATGGCTGATTGTACGGGTGTATGA
ACCAGTTGTACCTATATTGGCGGTTGTACCACTTCCTGGAGGCGTTGTAGAAGTTGGGGA
CCGGTTGTACTAGTGGAAGGGCCGGTTGTACTAGTCATGGATAATCTGGTGGGACAACCG
GGATGATACCAGTCTCGAACCGTTTCACAAGAGAAGCTTGGGGGATGTTGGAGCTATAGT
TGTCTTTAGTGGATCGGTTATATCGCTGGACCGATAGTTGATCGGTGGTAGACTGATTGT
ACCGGTAATCCTATGTTGGGCACATTCCATCTCCATGTTCTTGGGGTCCATCTTGCTCCT
GCCTTCTTCTTGGTGCCTAAGTACGCAAAGTGTCTTTGTTTGAGGTAGCATCTCACTACA
GGAATCGGGCATTTTGCTGTCAGGACGCTACAGACGACAAAGAGAGAATTACAGATGGCA
AAAAATTTGCCGTCAGCCCATGACGGCAAAAAATGTCGTGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGCATTTTTTCTAGCAGACGGCAAATTTTTTGCCATAAGTGAAAATG
GTTTGCCGTGAGCTAGTATGAGGCAGACGGCAAAAAAATGTGACTAACAGAACAACGCCT
CTAACTGACAACGTTAGTGCCTTTGTCGTCAGCCAAACAAGTACAGACAGCAAATTATAT
GGAGGGTTTGCCGTCTCCTGAGGTACTACACACGACAAAGCATATCATACTTAGCCGTCA
GCCAGGGATGCGCAGATAGCAAAGCATATATACATACTTTTTAGTTTGCATTACTTTATT
TTGGTACTTCAGTAGAAAATACATATTCTTATAAACACTAGTGATCCATATAGACAGAAA
TGATTACACAAATGCAACTNNNNNNNNTAGTACAAATGATCCATATCACATATATGAACA
TAACATGTTCATGCATTATCTATATCACACCATATATATCACATGTCATGGTGATCCATA
TCACAAATAGATAGACAGATATGACTATGAGACATTTTGGCACTAATAGATTTGTCACCT
AAGATACAAGCTACAGGCCAGACCCACTACAGGAAGCGACATACATTACTTGAGCACGAT
GGCAACCTCCTGCTCCTTATACTACTCCATCATCGCTGCGCCAACTACTGCTCGTCGAAG
AAGCTTGGCTGGTTCATCCAGCACCTGCACCACAACAGACCAAGAAAGGTTCACATCCAC
ATACAACGGACACAAGAAACAGTTATTTGGGGCACAAAAATAACTTCACTAGGCATCAAA
ATGGGCACAAAAGCGTAAGGCTAGAATACTAGATGGTTCTTTTCTATCCGGGGGGCTCGC
TCATCAATTATATCATTTTCCGTCTCCAATATTGTGTATAAATTGATTGTTATTTCCTGC
TTCTAGTCGTCCATACGATCCTTTCCAGTAGCAGCAAGATTTATTTTGCCTATTTTATTA
GCGTGTCATCAAGAAAGAGGCGAGTAAACTCCATAAGTTCAATCTCTAATGTGTACACAA
TAATTATTGAAGTGTATTGAAGATCAATGCACATATTTCATAAAGTAAGACCAAATCTGC
ATGCAAAGCTTGAAATATGTACAGTAAGGCCTCTCCACCATTTGGACTGCTATAGCTTAT
GTTAACCTGCATATGAATTGACAATAAGTTCAGTAAGGCCATACAAATAAAGAATAACAG
TTAAGTTGACTGAACCAACAGCATACCAAGAAGAAACACATATTGCTTGTGAAAACAAAT
TAAAGTTTATACCCTTTTAGATTCGCCCTTGCTGAGAGGTAGCAATTTGTGCTTAATACT
TATATCTGATGTTGCTTTGACGACAACAATTACTTTTTTCTGGGGAGTATTCTGGAATAC
AAAAAATTGTCCAATTGAAGCTGCGAGAAGAAAGAAACATGATGAAGCTTTCTCAAGACT
AATGGAATTGACGATCATACAAAATAGTCCATAATATAATTGTGCAAGCAAGAATAATGC
TTCTTGAGATTCATTAAAGTGAAAGGCAAGCTAGATAGACCATGCTATGATTTTAGCTAG
GAGAAAAGCTACCACGCGCAAACCTAATTGTCTATCAAATTACCAGCATGTTATTCTCTA
GTGATTCTTAAACTGTAAATGAATATTGCATTCACCAAATGGTAACCAGTATGCCCTGAA
GCAACTATCCACTAAGGCACTAAGACAGTAACTGATGTACATAGTTACTTAGTAGTATTA
AACAAAGCCCTCTGGAATTTTTATGCAGCAAAAAAAGTAGTTCCTTCAAGAAAAATATAC
AAAGCCCTCTGGAAATTCTTGATAGGATTTAGTATGAAGATATGCCAGTATTACTTTCTG
GTGCTGTTTACCGGTCTCAGGGTTCTGCAGAGAAGTTGATAATTGATCAAGTTCTTTGGA
GGTGCCACTCTTCTCAGATCCGGCTGTAGCGAGGGTAGGTGGAGGAGCTCCATGAACAAG
AGATCAAAGCAGCCACTAAATCCGAAGCTTGTCCGTATTCTCGGAAGAACGCCAGTCCAT
TTCCACAAAATAATCCAATAAGCTAGCTATCAAAGAACAGCAATCCTCACCTCGCCGGAG
CCAGGCTTCTTGCCCTGCAAAACCCTAGCCACCACCGCAGGGTCCGGTAGCAGGGCGAAG
GCAAGGACGAGCGCCGCGAGCGCGGCGAATCCGAGGAGCCCATCGAATTCGGGGCGAAAT
TCCAGGTGTGTCGCGGGAGCGGGAGGCGGGTGTCAGCCGGCTTGTCGTCCGATCCGACGG
CGCCGGGGCGGCGTCGCGGGTTGCATCGGCTGCGGCGAGGGGTCCGG