morexGenes - Barley RNA-seq Database

Contig contig_278623

Source Contig contig_278623

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_278623 (1582 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_278623

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45514	2	981 bp	MLOC_45514.2	Available	Available	LOC_Os08g44180.1, FRAME:-1, EVALUE:1e-24, 13108.m04790 protein expressed protein

CDS Structure of MLOC_45514

Contig Sequence (1582 bp)

>contig_278623 1582 assembly3_WGSMorex_rbca.fasta
GGCTAGGCGTCACACAGTGTAGTGTGGCGCCTAGCTGTCGGGCGTCACAGAAAAGGGTCA
GGCCGGGAAATATTTTCCCCGAGGGGTCACTCCGTGAGTTCTTTCGCCCCAGGGGTCATT
TTTGTCAATTTTGCCTAGGTAAGCATCCTGAAATTGATGTGATGAACATGATATATGAAT
AGTGAATAAAGGACAATGGAACAGCAAAACAATAGATTTATTAGCAAATTTCTGGAGTAA
AAACGAACTGGAAAAAGGTCAGTCAAGTAACTTGTGAGTAATACATTTTCAAGTCTGAGG
CTGGAAGTGATCAGCACAGAAGTTTGGAAAAGACATCCAGGTCCAGCTTCCCCTGGTGAG
CAGCAGAAGCCACCTCTCTCGCCAACCTTCCGACCACTCGCTCAATGTACACCACATACA
GCGCATTTCTGTTTTCTAGGATTTCCAGGTCCTTGCGTGCCTTCAGAATAGATCTGACCC
ATTCTTCAAATATTTCTGGATAACAGTTTGTAAAGTTTGATCAAAACTCTGTGCGATGAA
TTGCCAGGAAGATATAGCATAGCATGATGCAATGAAGCTCTATTAGCAGTGGTATTATTT
GGATATACATTTCAGTATCTATCAATTCAAATTTGTAACTAAAGATGCACATCTATATCT
TTCCTATTTATAAAGATTTGAGTTGGTGATGAGTTCACCCCTCACCTCCTCCTACATGTG
GAACCCATTGCAACATCAACCCAAATAAAAAATGTGCATGATGGGTGCCCAAATAAAAAA
TGGTTACTACACTGTTTGCACATCTGATAAATAAAATAATACTTTGGACTGCTCAGGTTC
CTGTATGCATGCAGGCCCTACATGGTCCTTGCCTATTTTTCATGTTGTTGAATCTTTGAC
ATTTCTTCGGAAGGAACGACATTGCATGGTTAAACATGGGTTTTTTTACCGAATTGCCAG
GTGCAGGGACGAATGCATGACTGGGCGTTGTACAAATATCATACATCAAGCATCGTACGC
ATAGCATCAATATTTTCCAGTTCTCCCAGTTATTTTTCTCTCTTTATATATAACCCTGCC
AGCATGTCAACGCCTTGCGTTGGAGCGCAGCTTCTGCCGGATACTAGCAGCTCGGCCTCC
GGTCCATGTTCACGCACCATCTAGATTATCTCTAGCCGCCGGTCCTTATCTCTTCTGTCT
CATGGACAGTAGCTGCTTGACTGACCTTCGACCCTGAGCGGGACCGCTGGCCGCTCGAAC
CTAATGGGCCACGCGCACCCTAGAGCTCACGCCACTGACTTCCCCTAGATGGCTAGGCTA
GCTTGGCATTTCATATTCAAGTTGGTCAACTAACATCTGACCTAACATTGTACTCCCTCT
TTTTTATTTACTCCCCTTATTAGGTTTGATCTAAACAAAATTTGATTAAGTTTATCAAAA
ACAATCTAAACTAAAATAATAATAAAATATTGTTAGAGTATGTGATGGGCCTGGGTCCGT
TAGTCTTAGGGTTTGCTTAGGGGTCAAGTAAGCCTTACTTGGAAGTCAAGTAAACCTCTC
TATATATGGAGAGAAGATGTAT