morexGenes - Barley RNA-seq Database

Contig contig_277631

Source Contig contig_277631

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_277631 (2313 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_277631

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45380	2	1468 bp	MLOC_45380.1	Available	Available	LOC_Os02g08120.2, FRAME:-1, EVALUE:2e-176, 13102.m00935 protein calmodulin binding protein, putative, expressed

CDS Structure of MLOC_45380

Contig Sequence (2313 bp)

>contig_277631 2313 assembly3_WGSMorex_rbca.fasta
TCCTGCTAATTAGAGCAGAGAAAGCCAAACTTGCTCCTTGAAAAAAAAAGTTACTCAAAA
ATAAGAAAAATAAACTCATGTCACAGATTGCTTAAACACACCTAAGCATAGGGTGTAGCA
CATCTCAGAAATTATTGCAGTTAAAAGTAAGGCCAGAAAAGGTTCTTATACTTCGGATAA
ACAGGCTATACCTAAGGGTTTAACGTACCTAATGAGCATTTAGTGCATTAAAAACATATA
ACGGTACCAGATATTAATAGTTAATACACATTATCCATGGCCACCATTCTTGGAATATAA
AGGGTGTGTGGACAGATCAAGACCAATGTGATATAAGATGAAGTCAGACATCTACATATT
ATTCCCTCAATCGCAGTTTCTTGGTAGTCTTTTCCCAGATCTAGGGCCCTGGAGGTTTTT
CTCCTCCTTTCTCCTGATAATACTCCTGCATACATGACGTTCCTGTTCTCCTACCATAGT
AAAAGCACTAACGATCCCTGAACTTCCAAAATCTAAAAGACCCGACCATAATACCGGAAA
CAAAATCTCTGGAACATCTCCTTCCATGTAGCATTTCCAATGGTAGGCAGGGCAAGCAAG
ATATGCAGACTCTGCATGAGATGAACTTCTAAGACAAGAGTGAGAGCAAAATCAACCAAC
TCTCAACTAATCACGTCCAAGCCCACACTCCTTAATATTGATGCCCAAACTAAAGGGCCC
TAGAATCGGGAACAGAGAGCATACCAATTTCAAAACTCCAAAACAATACAAATTTAGTTT
CATTATCTAGGATGGGTGCATGTTAAAATGAATGGAAACAACGTTTAAATTCAATAAAAC
ATAACACTAGATATCAAATGCCCCCGAATATATGCCCATAGCACAAACCTTTTGGCCATC
ATCGAGACTTTCAGATGAATAGAATTGCTCGCCAGAAATCAACCCACAGAATGCATAGAG
GTCGTTGAAAATAGCACCAGCAGTTCTGTGCTCATCAGAATAGTATATGTAATATTTTCC
ACTTAAGACGCAGGTTTTTGCATGTTCAACAAGAGAATCCCACATCTTGTTGGACATGCC
ACTTCCGAGGATCTAAAACAACAGAACAGTATACAAATTAGAACTACAACAGCAATAGAT
CAAAGGCCGTGGAAAGAAACGAACTATCTAAAACAACAGAATAGTATACAAATTAGAACT
ACAACAGCAATAGATCAAAGGCCATGGAAAGAAACGAACTTACAGTACGCAACTTCTGTG
GATCCCGAACAACAAGCCTGAGAAAATCTTCAACAGTTAAAATTCCAGATTTATTCAGCC
TCTTATGGAACGACCCATCTTTTCCTATTTTCTCTAACCTCCAGACCTCATCCTTCAATG
CAGGTGGATAATGCTTCTTGTACACTAAAGAAGTGAAATTCAAATTGTTCAGACATATCT
CAAGCGGAAGCACATGATTACCATTACAGAAAACTTACATTCTCCTCTATGGTCCTTAAC
CATGAAAGCTTCAGTTTTTGCCTCACGGATGCGAACACCTTGACAAAACCCTGAGGCAAT
TTTCAAACCAAGTCTGAATTTCCTACTCCTTATCCAGCTAGAGTTATCTGTGAACGTGAA
CTCCCCAATTGTGCCAACACCGTCTTTCAGTGTGACTTGTATATCGCCAGTTATAATAGG
TCGTTTCCCCTCACGCTCCTTCACTACATGACTGTCAAATTCCTCCTCTGTCCAGCCTTC
CTCATCTTCATTGTTGAAATCGCCTTCTAGAACGACAATACCAAGCTTGGCAGACGACTC
TGGCCCAGATGATACAACACAGCCATTGCCGGTATCAAGCAAAACCACATGAATTGAAGC
CCCCTGCTCCCCTTCAACTTTTCCCCCGGTAAAAAGGGGAAGGGACAATCTTGTCCTGAA
TTGGAGTTGCAGATTTTTTCCACCAGGACCTTCAATTCGCTTTGGAGAAGACCTGCATTA
TATTCCAATCAGTAGCAGATAATTAGTATCAACGTGGCTCCCAAAGAAGAACATTTCACC
TTTTAGACCTCAAAGTTTACATACTTTGCAAGGATATAGCATCATGCGTGAAGCCAAATT
ACATTGCACACCACAAACATCAAGTTACTGGCAATACCATCATGTGTTACTTGCCTATAA
ACATAACACCCAGAAGATAGCGCTTTAGAGATGGTTCTTGCCATTAACTAGGGAGATTCT
TGTCAGTTGGACAGTTGGGGTATTTTGTAGATGAACAAGTTCAATGAGATAATTTTAACA
TGGCCATAGTGGTAATCTTATGTATTTGCTTAA