morexGenes - Barley RNA-seq Database

Contig contig_277574

Source Contig contig_277574

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_277574 (1434 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_277574

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45372	2	752 bp	MLOC_45372.1	Available	Available	LOC_Os07g29220.1, FRAME:-2, EVALUE:3e-123, 13107.m02929 protein Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed

CDS Structure of MLOC_45372

Contig Sequence (1434 bp)

>contig_277574 1434 assembly3_WGSMorex_rbca.fasta
GTGATCCGGGCCAAGGAAGGAAGGCAACCCCCTGGAAAGATGTATTCCTTTATGAAGTCT
GAACTTCTCCTGTATTCCTCATACCGTTCTTCTGGAATTGATATGAACTGCATACATAAA
TACAAAGAAAAACAGATATTTGGTTTCACTTAGTTAACAGTCAATGATTCCCTGCAAAGG
ATGAAGCGAATCGATGCGTGTTCGTATTGATTAATTTGGTAGAAACCTGGAGAACAAATA
GACCATCTGGAGCCAATAGAGACTCGCAACAGCCAAAGAAATCGTCCATGAATTCATGAC
CGACCCCTTCAATCATTTCGCTGCGTGTGTCAACAAGTGGTAAATATTTTCTTCGATTAA
ATATATTCATATTCAGAAGAGCAGTATTATTACGTACCATGATATGATCCTGTCGTACTT
ACTCCGACTTGGTATTTGACGGTAGTCACACAGCAGGAAAGTTATACGATCCTAAGAAAA
CAAAGCGTAGCGATGTTGTTATAAATAGATAATAGAGAGGAGCACTTGCTGAATTGTATT
AAGTTCTACAAAGGACGTCTTAATCTTAAGTGCGGTCAGAGTCTAAAAAAAGGTGAAACT
TGTGTCTGAACTCTGAACTCTGGAGGTAGTATAAAATCATAATTTACCTCCAAACCAGCT
TCCTTCACTTTAATTTCAGCGTATTTAAGTTGCTCCTCAGATAGTGTATATTTGCATCCA
GTTTGCTTCATCACTTGCATCGCCAAGCTACCCCAACCGCTACCGATTTCGAGAACATGG
TGATTCCGCTCCACTTTAGCCTTACATTATTACATATTCATCAGATCATGTGTCCATGTA
TTCATCAAGTATTAATAATTATATCGGTACTGTTACCTTCTTGATTAGTAGATTAACTTT
ACGTTGCTGGGCTACTTCTAGGCTTTCATCTTCAACCTACAAAGATTTAACACCACTTAA
TTCGCACGCTGGATCCACAGTTAGGCAGTTAACCCTACTAGCGATCACAGACGAACAAAC
CTTGAATACTGCACAAGAGTAAGTCATCGATGGATCCAGGAAAAGTGAGAAGAGATCATT
ACTCTGCATGCACATTTCAGAATTTGTCAGTGATAAGGTCCAGACAGAGATGAGGGCAGC
AGGAGGAAGATGCACTGGGAATGACCAGGTCATAGTGCTGAGAGATGTTTCGGCGAGTTT
GCGTGACAATATTCTTCCTTGAGATGTGGCGCAGGAAATATTTTGCCGATGCAATCCCAG
CTGTCAAAAGCATGGGTGTCCACCAACCCCTGCCAATTAACAATACAATTACATACTGGA
CCACTGACCACTTCAATCACTTCAAAGTTAACTTCCTATTGATATCTAGTACTCCCTCTG
TCCCAAAATAACTGTCTTAAGCTTAGTACAACTTTGAAGTGATTGAGATCGGAA