morexGenes - Barley RNA-seq Database

Contig contig_277380

Source Contig contig_277380

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_277380 (2467 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_277380

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45347	1	872 bp	MLOC_45347.1	Available	Available	LOC_Os07g33320.1, FRAME:+1, EVALUE:1e-16, 13107.m03385 protein expressed protein

CDS Structure of MLOC_45347

Contig Sequence (2467 bp)

>contig_277380 2467 assembly3_WGSMorex_rbca.fasta
GCCGGGCCGTGTCGTGCCGGGCCGGCCCGTTTGGCCAGGTATGCCCCGGTGTAACTAGCA
AAGATGTCAATGCCATTTTCTCATACCTGCGTTTTTATTTGGTTCTTTCATGAGCTTGGA
AATAACAAGTACTCCTAGATAAATTGTCATAAACGTTGATACGGCCTGCCCAACTAATTC
TCTGGTGGTACCATCAATAATGCCATTGAAAACATAGAGCCAGATGTAGAACCAGCCTGC
TTGCCCCGCCTGAGGCCTGCACTGTCCGTCACCTGCCTATATAACACAAGACAGGCGAAC
ACGTCCCATGCCAGCTTCCAGATACCAACACAGAAGAAGCTCATACACAAAATCCTCTCT
TCTTCCTCGTTGGCTCGTTGCTGCAGCACATCATCATTCTCCAGGATGCTTCTGCTCAGG
GCAGCGCCGATGTCTTACGCGAAGGTGGACAAGGTGGATGCCGAAGAGGCGCGGCACTGG
AAGGCGCAGTTCCTGATCCACAAGGCGCTCGAGACGGGACCGACTAGGCGGCCGCAGCCG
GCGGCGGCATTTGCGAGGGTTGGCGGCTGCAGGGTCGTCAGGTCAGTGAGGATCGGCATC
CGGCTCAAGAGGCTCAGGATCGCCGTCCGGAGCTTCAGGCTGCGCGTCTGCCGGAGCGTC
CTCAAGCACCTCAAGAATCTCAGGAGGCTCGGATCTCCTCGTTCTTGATCCCCTCGATCT
CTTCCATCTGAAAGAGTTTTTTATGTGCCAGGGAAACTAAGCTGCCTTCTATTTCATTCG
CAATACCTAACAACAACAACTTCTGCCCTTGATTTGCCCAGAAGATTTGGGCGCGCGCGC
GTGTGTGTGGATCGATGCATAGTATAGTACTATAGTATGTATGTAATTTGTAAATGGAGC
AGATCAGGAATGCTTGCTCCTGTTTCAGGCTTCCTTTTTCTGGATCCTATCCTACCTATC
TTGTTGGTCACTGACAGCTAATGAAACTCTTAAGTTATGTATATGCAGCTTATCCGTGTT
GAATTGTTGATTGAGTCATTGAGATTCTAAATCCTTTGCTGCACCGATGAGTTTTGGATC
TTATGTTTCGAGAAGTAAGTCATGAATCCTTTTTTGTTGTTATTTTTCTTTTCTGCAAGA
TCTCCGAAGAAAACGGCTACAGTAATTCACGATTAGCTTACCTACTACCTGCTGGGTAGG
AGGACATGTGTTTTGCGTCAGCCGGCGGGGGCAAAACGAAAAGAGAGTGACCAAAGGTCA
TGCATTGTTAATGGTCGATGAGAAAGTAGATTTGGGGCTGAACTCCTCCTGCCTGTGGCT
CGTTCAGGTTGTGTCAAGCTGTGCTTATCTGAAAACTAAAACATGGGAAATTGCACTCGA
ACTAGCCCACTTTACTCAAGAATTTAAGGCAGATGCCGTGGTTATCTTACAAGGAGCCAA
CCAGTGGTTATCTTACAAGGAGCCAACCACGAACTATGACGGCGCAATAGGGGGAAACCC
TAGAAGAAAGACATGCCCTTCCCGAGCTGGATCCATGGCTTTTATAGCCTTACAAAATGA
GAGGGACGGTAAAGCTAAGAAAGCTAAACCGAAAAAGACGAGCGTGCCGAAAGAACGACA
GTGACGCTCGACGTTGTGATCACTGTTCGATCGAGGATCAACGGTTGCCGGGACCCTACT
TAAAGCGAAGCGGTACGGAGGCCTGGGATGCGTTTGATCCTTGATGGACGGTCTTGCTTG
CTTCCCGCCTTCTTCTTCCTTTGAAATCCTCGACTTGATCAGGATGCAGACACTTGGGTC
CTAACAATTCCCCCCGGTTGACATCAGACCCGTCCTCAGGGCTGAAATACTGGGAAAATC
TTTTGAATAAATGAAGCATCCTCCCAGGTAGCATCTTGCTCCTCCAAATTAGTCCACTTG
ATGAGCCATGTGACTACTGGAATTTGTACATCACCTTGTACTCTTGGAATAAGCTTTCTA
TCCAACAGTCTCGCAGGTTCCTACAATATTGTGCCATCAGTATGGAGTAGTGGCAGGTTG
GGGTTGGGGATAGCTTCTGGTCCCAGGTGCTTTTTGAGTTGACTGGCATGGAATGTAGGA
TGAAGTTTACAGTGCTCAGGTAACAACAACTTATAAGCTACATGTCCAACTTTTTGGATG
ATTCTGAAGGGCCCATAGTATTTAGAATGCAACTTGAGGCATCTGTGTAAGCTGAGGGTT
GTATGCCTGTAGGGTTGCAATTTTAAGTATACCATATCACCAATTTCCAATGTTCTTTCA
GATCTTTTTCTGTCAGCATACATTTTCATCCTCTCCTGAGCTTTGAGAAGGTTTCCTTTT
ATCTGAGCATTAATTTTCTCTGCATTAAGGATGGAAGAAAATTATGTTGGAAATATGCCC
TNNNNNNNATAATAAATTGGTTATTATCATATATTTCCTTCTTCATGATAACCGTCTATT
GTTCATG