morexGenes - Barley RNA-seq Database

Contig contig_27668

Source Contig contig_27668

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_27668 (467 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_27668

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45190	1	259 bp	MLOC_45190.1	Available	Available	LOC_Os06g07080.1, FRAME:+2, EVALUE:3e-47, 13106.m00735 protein pre-mRNA-processing-splicing factor 8, putative, expressed

CDS Structure of MLOC_45190

Contig Sequence (467 bp)

>contig_27668 467 assembly3_WGSMorex_rbca.fasta
TCTATGGCATTATTTGTGTTGTTAAAATTTTTGTCTTATTTAATAAATGACATGCTTGTT
TATTTTCTCTTTTGACAGACAAATCCTGCTCTGTATGTGCTGAGAGAGAGAATAAGAAAG
GGTCTTCAACTGTATTCATCTGAACCCACCGAGCCATAACTGTCTTCACAGAACTATGGA
GAGATATTCAGCAATCAAATCATATGGTTTGTGGATGACACGAATGTCTATCGAGTTACC
ATTCACAAAACCTTTGAGGGTAACCTGACCACCAAATCAATCAATGGTGATATCTTTATT
TTCAATCCAAGAACTAGGCAACTATTTCTGAAGGTTTGTTCCTTTTCTTTTGCTTTTAAA
AGGGTGATAACTTCTGGTCGTACGTCGTTACCTTAAAATTCGGTAATCTTCGTTTAATCT
GTCGTACGCACTAAGGAGAGACCCCTTTTTAAGCTTCGTCCGTTGTC