morexGenes - Barley RNA-seq Database

Contig contig_276662
Source Contig contig_276662
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_276662 (6626 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_276662

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45183	1	990 bp	AK355875	Available	Available	None
MLOC_45182	1	931 bp	None	Available	Available	None
MLOC_45184	1	356 bp	MLOC_45184.1	Available	Available	None
CDS Structure of MLOC_45183

CDS Structure of MLOC_45182

CDS Structure of MLOC_45184

Contig Sequence (6626 bp)

>contig_276662 6626 assembly3_WGSMorex_rbca.fasta
GGCCCTTGGGAGGAAGGAGGTGATGTAGACAATATGTGGATGAAGATGACGACTTGCATT
CATAAGGTGGCTTCAGAGGAGTTTGGAGTGTCCAGGGGAAGTAGAAGCAAAGCTAAAGAT
ACGTGGCGGTGGAATGATGATGTCCAAAAGGCTATTAAGGAGAAGAAAGATTGTTTCAAA
CGCCTACACCTGGATAGGAGTACAAACAATATAGAGAAGTACAAGGTGGCAAAGAAGGCT
GCAAAGCACGCTGTTGGTGAAGCAAGGGGTCGGGCGTATGAGGACCTTTACCAGCGCTTA
GACATGAAGCAAGGCGATAGGGGCATCTATAAGATGGCCAAGATCCGAGAGAGGAAGACG
AGGGATGTCGACCAAGTCAAATGCATCAAGGGTGTTGCATATTAACTTCTGGTAAAGGAT
GATGAGATTAAGCATAGATGGCGGGAGTACTTCGACAAGATGTTCAATGAAGAGAATGAG
GGCTCTACCATTGAACTGGATGACTCCTTTGATGATACTAGTAGGCGTTTTGTGCGTAGA
ATCCAGGAGTCTGAGGTCAGGGAAGCTTTAAAAAAGATGAAAGGAGGCAAGACGATGGGA
CCTGATTGTATCCCCATTGATTTGTGGAGAGGCCTAGGAGATAGCGATAGTATGGCTATC
TAAGCTTTTCAACCTCATTTTTGGCCAAGTAACATGCCAGAAGAATGGAGGCGAATATAT
TAGTACCAATCTTCAAGAACAAGGGGGATGTTTGAAATTGTACTAATTACCGTGGAATTA
AGCTGATGAGCCATATAATGAAGCCATGGAAGAGCCATTGAGTGCCGTTAAGAAGAATGA
CAAGCGTGACTAAAAATCAATTTGGTTTCATGCCTGGGAAGTCGATCATGGAAACCATTT
TCTTTGTACGACAACTTATGGAGAGATACAGGAAGCAAAACAAGGATCTGCATATGGTGT
TCATTGACTTGGAGAAGATCTATGATAAGATACCGCGTAATTTCATGTGGTGGGCCTTGG
AGAAACACAAAGTCCAAACAAAGTACATTACCCTCATAAAGGACATGTATGATAATGTTA
TGACAAGTATTCGAACAAGTGATAGTGACACTGATGACTTCCCAATTAAAATAGAATTGC
ACCAAGGGTCAACTTTGATCCCTTATCTTTTTTTACTTTGGTGATGGATGAGGTCACAAG
GGATATGCAAGGAGATATCCCATAGTGTATGCTCTTATGCCTAAACCCTAAGCTTAGTAG
AACTAAAATCGACTACATGAGGTGCGGTTTCATTACTACTAGGCACAAGAGGGGGGAGGT
TAGCCTTGATGGGCAGGTGGTGCTGGTACCTCAGATGGACACGTTTCGATGTTTGAGGTC
AATGGTGTAGAAGGATGGCGATATCAATGAAGGTGTGAGCCATCGAATCAAAGCCGGATG
GATGAAGTGGCTCCTAGCTTCTGACTTTCTCTGTGACAATAGAATGCCACACAAGCTAAA
AGGCAGGTTCTATAGGACGACAATTCGACCCGCAATCTTGTATGGCATTGAGTGTTAGCC
GACTAAAAGGCGACATGTGCGACGGTTAGGTGTAGCGGAGATGCACATGTTGAGGTGGGT
GTGTGGCCACATAAGGAAGGAACACGTTCGGAATGATGATATACGGGATAGAGTGGGGGT
AGCACTGATTGAAGAGAAGCTTGTTCCACATCGTTCGAGATGGTTTGGACATATTCAGCG
TAGGCCTTCAGAAGCTTCGGTGCATAGCGGATGGCTAAAGCATGCTGATAATGTTAAGAG
AGGTTGGGGTAGACCAAACTTGACAAGGGAGGAGAGGTTTGAAGGACTGGAATATCACCA
AAGAACTAGNNATGGACAGGGGTGCGTGGAAGCTAGCTATCCATGTGCCAGAACCAAGAG
TTGGTTGCGAGATCTTATGGGTTTCAGCTCTAGCCTACCCCAACTTGGGACTAAAGGCTT
CTTGTTGTTGTGTGGTTTAATTAGACATGCATATCATATTTCAGGGGTATACTTAATCAG
AAGATATACACATTTCTTCCATCTATAATACATGAGGGTATTTCTTTATTATTATTATTG
GTGGCAGGTGACATAGCAAACCAAATTGGAATACACACACAGTGTTCCATCAGTAAGACA
CGCCAGGCCATATATAATACAAATAGAGGGCTTGCTGTTTTCTCCTTTTCGAAAGAATGC
ATGATCTTGTATATGAGACCTCTAAGCCCTACATAATCTAGCAACATAGTTTGCACACGT
ACTCTTTTTGTCCATCGCAGATGGGCATCTCGAATATAAGTAAAAGTATTTTTATAATCT
TTTGCTACGAATGTATGAATCTGAATCTTATGGGTGCGTGGAAGTTAGCTATCCNNGTTC
CAGAGCCATGACTTGGTTTCGAAATCTTATGGCTTTCAACTCTAGCCTACCCCAACTTNN
NNNNNNNNNNNNGGCTTGGTTGTTGTTGTTGTTGTATGAATCTGAATAGCTAACTTAGTA
ACTTCAGTTCAAATTATATCAGTTTAAAGTTTCAAAAAATTGATCTTACCTTTCCTTCTA
AGAAGTGTATTCCGCAAGATGTTTTCTTTTGCCTATAACACCAAAATATTCTTAGGAGTG
AAAGTGTGTTGTATCCTTGCACGTCACGAATTTCCTTGGATGCCAGGCTTGTTGGCAGTA
TGACACAAGTAAAATTTCATGATGACTTGAATGAAACGGTTGAACTCTGGACACGTTGGC
TTCTGGTATGCCCAGACTATGAAAAGTTTCTTTGTTCGGCACTGAATTCAAGAATATTGT
TGTGTTTGTGTGTATGCCTCTGAGGTCATCATTGGATTCTGTATCTCTAGGAAAATCCAA
TAAATGCAATGCACAATCATTTGTCCACTTTTATATGGTGGTTTGTGGTTAAGTGCCATC
ATTTCAAGCCAGCATAATTAAAGAGTTTGAGTTGAGGGCCGCTTTCTGTCCGGTTATTAA
ATAGATGACTTCTACTCAATTAGGAATAGCAAAACTCTTGAGATATTCTCCATTGCATTC
ATTCATTTTATCTCATTCTTATTCTAGCATACTCATAGGCCAATGCATTCCATATCACAT
ATATGCATAAAGCTTAATTTCAGCATTCAATTCAGGCTATAGATTCATGGAGAATCTAGA
GCAATGAGTCAATCAAGTACTCTGAAATATGTAATTAATGTGTATGCACCTGCATGCTAG
AAGGGTCTGGGTGTCGAAAAAGGTTTGGTGAGAGAAGTGCTCGACTAGTGGCTCAGATCG
AAGACAAGGCAGCCTCAAAGCTCCCCTTCTTGTCGTCGTTCTGAGCCATTCGAGATTACT
TGGTTCTGACTCCTTTATCCAAGTCCTTCTCGGGTCCCTTAGTGGTCTCTCCTCTTGAGT
TCTCTTCAACTAAGAGTGAATGGTTACATGCCCATTGTGTGTGTGTGAGTTGGTGGGGTG
GGGTGGGGGCTTACGTAGGCAAAAGTTTAGTGCACTAATCCATGGTGGACTTGGAAGAAG
GGGGTGGTGCATGATCCATGTTGTACTAGCCCACCCAACCCTCCAGCTAATGGGCGGCTT
TCTCTTGGGTCTTCATCCTCTCTTTTCACTTCTCTTTTTAGGCCCTCTTCCTTTGACCTG
TTTACCACGACTAGTTGCTTGAACTTGCGTTGATGTGACTTGACTTCGATAGTTTGCTAC
CCTGATGCCACATTGGACTAGGCGGGTACCACGGGTAGGATTTAGCTATTCCGACAATAT
TTCCCTTCTAAAATATCAGGGAACACTTATCCTGTGTTTTTGTTTTGACCTTTATTTCCT
TTCATTTTGAAATTGTTACCAAACAATCAGTCTCTGATTTGCTTTCGTCTTCTGTTTGCA
TCAGATTTCCAGCATGCTTGGTCCTGCTTTTCTGTTGAAGCTGTACATTGCAGGAGCACT
TGTTGGATCCACATTCTACTTAGTAGAAAAGGCTTTTATAGCTCCAAGGAGACAGGTAAC
GTAGTGTGGGAATGATTATGTAGGATGGACCGTTCATGGAACCCTGCATCGAATCGAAAT
TATTGGTTAAAGTTTCCTGATAGTATTCCTAATTTAGCAAATAACCCTTTTCTTGCAGCT
TTATGCAGGGTGGGACATGCAAAGAAGTAACTCGCTTGTACGTGATTTCTTGTTCCAACT
TCCAACAGTTCATTTTCATTCGTATCGATAATCAAAGAGGCAATAGTATCTCATATAAGC
AGTAAATGTTGCCAACCAACCAATTATGTATCATCTTATACCTACACATAGGTAATTAGA
AGGTAAATGTGGCAATCTGGGGTGATATGGTGATTTGCTTGTAACATAATGTAAAACCAC
CAAATGAGCATTATCACCTATCAGTGGTATTGTACGTAAGTGTTTCTATTTAGTTCTTGC
ACACCAAATATGACCTTTTTTTATTCATGTCACTCAGGGTGCAAGTGCTGCAGTTAATGC
CATTGTGCTTCTTCACATTTTTCTCAAACCAAAGGGACGGATCTACCTTTACCTGCTCAT
TCCTGTTCCAGCTGCCTTCGTGGTGAGGATTTTATAGTTCCCCTTGTATAATTTGGCAAG
GCATGTGGGTGCTAGGAAATGAGAGCATAATTTCTTTTGACTATATATTTCAGGGGGCTG
CTTGGATTGGTCTTGATTTGTGGAGGGCGAAAGAGGTATACAAAATTTTAATTAACTCTC
TGTTAGGTATTCTTCACATAATAAGTGAATGTTATCAGTGCCATTCTGTTGCTTATGCTC
ATCAGCCATCAGTTTTCTACAGGAGTTTAAGGGCACTGTTACTTTCATTTGTTCATTGCT
TGGAAGTTTGTCCATTTGCATTTCTGTGTGTTTGTGTGTTACCTACCCCGCACAATTCCT
GGTTTTAAATCAACCTGGGGTTGAAAGATATATGAATCAATATTCATGTCTACGGTGATT
GGAATAATACTAAATCTCTAGTTGAATAATTTGCTGATTATAAACCATGTGGTATCTTTT
TGGCTGTAGTCTGGGCTGATCTTCTATCTTTGTACATTTTTGTCCGATAAATTTTATCCT
ATGTTGAGATGAATGTGCTTGAAGGTAATCACAGGTCTGGCATTGTGATCCGTATAGTAC
ATTAGTACCACAGTCAAGCTATGCCACATGTATAATTCCTTGAGTATCTCATTTTATCGT
ACATCTTCTGCTTCTTCTTGTTTCTCCGAATATATCTGATGGTCTTCTAAGCAAATATTA
TTTGTGATTACAAATGAATTATTTGTGCTTGTCGTGCTTACATGGTCTTAAGGCTAACTG
ATGCATGTTTGAATTTTCAGGGTCAGGGTCAGACATCAGCTGCTTCTCATTTAGGGGGCA
CCCTAGTGGCTGCTCTTGTGTGGGCTCGAATTAGGAAGGGCTGGATCTGACCATGCAGCT
TGTTCATATGGAAATCTGACCGGCTTTCCCAGCTGGTGGTCTCTCCGTTTGACATTTGTT
GTTACACGAGAAAGTTCTTGTGGGTGGAGGGAATACTCTGCTGCTTATCGTCCAAGTTTC
TGATCTAGAAGTCCTCAAACAAATTCTAGATAGCATCATGGCAGATATTGCCAACTGATT
GGCCGGAATTTACAATCTTATTATTGTGGCTTGCAGGAGCAATAACATACCACAACTTAG
ATTGCAATATCGGTTGCTATAATGATATCCAACTCGGCTCCCGGGAGCACATGCGCCTAC
GTGCCGAAAATGTTTCTTTTGTCAAATCCAATTCGGCCCTCCCGTTGCTACGGTGCTATT
TACCTCGCTAGGCCGAATTTGAATGCAGTTATAACTGGGTGAGATCAGGACGTCAAGGTA
GTAAAGATGGAATGGTTAAGGAACCTGTTCAAGGATACGTGAGATAGTTGTTTTCTGTCG
TTGCCACTCGATGGTCCTATGGTACAATCGAAGTTGGTGACGACCGAACTCCCGCGAACC
CGATTTTGTTCGGAAGGGAAACACTCCGTGCGAACAGCAAATCCTATTCCGCGAGTCAGG
CGATTCAGGCGCCCGATACAGTATAAGGCCGTGCTTGGATTGCCGTTTTCCAGCGGATTA
CACGCGTAAAACATACAACTGTAAGAAAAAGCGAGCGATCTACTTGGGAGATGGTTTTGA
CATTGTAAATTTGACACCCGGTTTCACTTTACAATTGTATTCAGCTCGTAACCCACCGGT
TTGCAAAACACTGCTCAAGTCATCGTTTTCTTTCATATTCCCAGTCTCGCTCGATCAATT
GACTGGCCAAAGCGCCACAATGGCTCGCCGGAGCACGCCGAGGACACTGCCGTTCCCCGG
AGGCACCACCGCCAACCTCTGCCGTCGTTGCCTCCTGCCGTGACGGCTCCACCACCGCGG
TCCGTCATCAACGTCCAGCGTCCGCCTCTGCTACCATTGATGTTTGCACCCCGTCGAGCT
CCGGGCCGCCGCCGCCATGTCCACGACGTCGCCGGAGCGCAACCAAACCTCCTTTGCGCG
CCACCGCGGAAGCGCCTCCGTGCGCCGCCACTACGTCTTGTCACCGCCGTCGCCGGATTT
CGCGTCCGGCGCGGCGTCGTTCTACC