morexGenes - Barley RNA-seq Database

Contig contig_276469

Source Contig contig_276469

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_276469 (1995 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_276469

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_45142	1	702 bp	MLOC_45142.1	Available	Available	LOC_Os08g06440.1, FRAME:+1, EVALUE:2e-23, 13108.m00654 protein secretory carrier-associated membrane protein 5, putative, expressed
MLOC_45143	1	746 bp	MLOC_45143.1	Available	Available	None

CDS Structure of MLOC_45142

CDS Structure of MLOC_45143

Contig Sequence (1995 bp)

>contig_276469 1995 assembly3_WGSMorex_rbca.fasta
CAGTCTACAAATTTATACGAGGGGGGGGTGTCGCTGTTACCTCCCTCCAAGGGAACGTCA
GCCAGCTTACATTGTCGAAAACTTTTTATAACCCCTTGCTGTCTGTGACGTGCATGCCAT
AAACTGCTTAGAAGGACAAAACCAACCACCCATATGGAATTGGAATGCAGGATTTTCTTA
AATCCTGCGCGAACTAGTTTCTCCTGAAATTCATTCGTTTGCCACATTCACAGCCTGTTT
GGTTCGGGGATATTAGAGGCAGGGAATGGGAATTTAAAAGATAAGTGACATATTATCCAT
CGTTTGCCTAGTACCTTACTAAACTCCAACATATAAACTCCCATTCCCTTTACTCATTCT
AGCCAAACACGCGGTCAAGGGTAAAGGAAGAAAATATATGAAGCACCTATCCGTGATTGG
AAAGTATTGACCGGGGCCAAGGTGCCAGCGGCCACCATTAACCGGAAATAACCCTTCATA
TGGTCATGCACAACTTAGAATAGATTCTGGCCCATCCAAAAGGCAGACAACGCAGGGATT
TATTCATGCCTAGAGATCTTCTCAATGTCTCCTAGCACCTATCTGCTCGAAGGCGAGAAT
GTCAATCCTACCGCGGTATTCCCGAGTTTCCATGTTTCTTGGGTCTTGTTCGGGTTTTGA
TGAGACATTTCCATTTCAAACATTTGAGTTTTCATGTCCGGATCGACTTTGGTTCAGAAA
ATTCATGCCTTTCCGATGATCCTGTACCTTGGCTCTCACAATTGATTTTTTTAATATAAG
CCTCTGAATTGCATGAGCAGTTTATCCTACATCATTCTCTCCCCAAATCAAGAACTTGCT
TTTGATCAAAATGCCCTAGTTAGGAAGATTTATCCTCTTCTAAAAAAAAAGATTTATCCT
GTGATTTATGATGACAACTTCTGCTTATGGTCTGGTTTCAGGGTTTCCTTAGATGGATTG
GTTGAAATTTAGTCGCAAGATTTAACTCTTATATCTTGAATTTCCATTGGCCGTATCTGA
TCTGATAATTTGTGATGTGTACTAATTTATTTATTTTACCCAAAGTGGTGTACATTAGTT
CAGTATGCAGCCTGAGTCTAAGCAGGGTGTTATTTCAGTATATCATTTTTTAAGAATTTA
TATCAGTTGCTGCTTGTTTCTTTTTGGACATATCATTTGCTCATCTGCGTTGGTTTTTCA
GAATGGAGAAGCATCAACACCAACTCCGGCAAAGAAATCATGGATCCCAGCAGGCTTTGG
AGGCAGTGCCAAGCATGGCGCCACCATCGACATCCCATTATATGTACATAACTCGTTATC
CATATAACATGATAATATTAGATTTTTGGTACAGTTGATGATAAGTCCAGTTCATGTAGG
ATCCGAAGAAGCGGGAGAAAGAGCTCTTATCATGGGAGGAGGATTTGAAGAGGAGGGAGC
GGGTTAGATCACCTTTTTTTACTTATTATACAAATCCTATAGTGTCGCCTCCATCATCAG
ATTGTAATCTTGAACTGTTATGTGTTCATTTCTGAGATGAATATTTTGAAAAGAATCTGT
CATGTGAAATTAACCAATTTGCTCAAAAGTGACTCTTAGAAAAATTTCTCTGAATTGTAG
CATTCTTTGCAGGATATCATACAGAGGGAGAATGCAATGAACAGAGGTGGTTCTCCTAGA
TCATTGTCACATCTCCATCATGGTTTAATGTTGAGATAAATACACTAGCAGTTACTGAAG
TTGAGGTCGAAGCACAATACGGTACCCGTGGCCTCGATCTCCTCTCCACCTCAACTCACT
CCACTCCACTCTACCGGCGGCCGGCGCAGCGAAGCGAGGAGGAAAGGAAGGAGCAATGGC
GGAGCGCGGGCAGTACGGCGGGCACCACGGCGCAGGGCAGCAGCAGCACGGGCGCGGCCT
GAAGGGCATGCTGCAGGAGAAGGGCCCGTCACCGTCGCCTCCGCAGTCCCCTCCTCCAGC
GGAACGGCGGCCGCG