Map Locations of contig_275993 (4634 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_275993

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_45012 3 1626 bp AK366063 Available Available None





CDS Structure of MLOC_45012






Contig Sequence (4634 bp)

>contig_275993 4634 assembly3_WGSMorex_rbca.fasta
CGCAGGGCGTGGGCGGGCCGGGCTACCGGTTCTTCGTCGGCAACCTCGGCGAGATCAGAC
GGCTCCTCGCCGACACCGCCGGCGCCGTGCTGGACGTCGGCTCCCACGACTTCGTCCCCA
GGGTGCAGCCGCACTTCCGCAAATGGATCCCCATCCACGGTGCGAACTAACTACGGAAGC
CGAGCCCGTGAATTCCCCTCCTCTAGCGGACCTAGCTAGTTCTTCTCTTCATGTTCTTAT
GCTGTTTTGTGCTCTGCAGGGCGCACGTTCCTGTACTGGTTCGGGGCCAGGCCGACCCTG
TGCGTGGCCGACGTGAACGTGGTGAAGCAGGTGCTCTCCGACCGCAGCGGGATGTACCCC
AAGAACGTCGGGAACCCGCACATCGCCCGGCTGCTCGGCAAGGGGCTCGTGCTCACCGAC
GGCGACGACTGGAAGCGCCACCGCAAGGTCATCCACCCTGCCTTCAACATGGACAAGCTC
AAGGTACGTGACGTGTGTGTTTTGTTTTCTACTGTACTATTCATTGTGCTGACAATTATC
CAGTTAATGCACCGCGGCATAAAGAGGAAACTAAGTAATGTACTAGATTATTGTCTTTCC
TAAACAAAAAAAAGGCGATTTACATTTATTTACTCCACGTATTTGGAGATGAAAAATTTA
TAACGATCTTTAACTTTCCATAGTACAGGAATCTGTCATATTTAAAACTGTTTCGGACCA
TGCTAAAATTTCTCTTATTTGTATGCCAGATGATGACGATGACCATGTCGGACTGCGCTG
GGTCAATGATGTCTGAGTGGAAGGCAAAGATGGCGAAGGGTGGCAACATGGAGATTGAGC
TGAGCAGACAGTTTGAGGAGCTAACCGCAGATGTGATCTCTCACACAGCATTCGGGAGCA
GCTACGAACAGGGAAAAAAGGTCTTCTTGGCGCAGAGGGAGCTCCAATTTCTTGCCTTCT
CCACCGTATTTAACGTGCAAATCCCAGCATTCAGGTAAATGCAACTTCTTTTTCTATACC
ATTTCAGTTCCAACCAAGACACACCATACATTTTTACGCAAAAAAAATTAATAATTCCTC
CATGTATGTTTGTGAAATTAATCAGGTACCTTCCAACTGAAAAGAACCTTAAGATATGGA
AGCTTGACAAGGAGGTGAGGGGCATGCTCATGAACATAATCAAAACCCGTCTTGACACCA
AAGACACCATGGGTTACGGCAACGACCTGCTCGGGATCATGCTGGAGGCATGCGCGCTAG
AGCATGGGCAAAATCCTATTCTAAGCATGGACGAGATCATAGATGAGTGCAAGACCTTCT
TCTTCGCAGGGCATGACACCAGCTCACACCTGCTCACATGGACCATGTTCTTGCTGAGCA
TGCACCCGGAGTGGCAGGAGAAGCTCAGAGAGGAGGTGCTGAGAGAGTGTGGCAATGGGG
CTCCCACCGGTGACATGCTCAACAAGCTTCACTTGGTCAACATGTTCTTGCTGGAAACTC
TCAGGTTGTACGGCCCTGTAGCGGCCATTCAGAGAAAGGCAGGTTCAGATCTCGAGGTCG
GTGGCATCAAAGTGCCCAAAGGCACAGTCATCACAATCCCCATCGCGATGATACATCGTG
ACAAGGAGGTCTGGGGTGAGGACGCCAATGAGTTCAAGCCTATGAGGTTTGAGAATGGAG
TGACACGGGCCGGAAAACACCCCAATGCCTTGTTGTCTTTCTCAAGTGGACCCAGGTCTT
GCATAGGGCAAAACTTTGCTATGATAGAGGCCAAGGCCGTGATCGCCATGATTCTTCAGA
GGTTCTCGTTCTCCCTATCACCTAAGTATGTCCATGCCCCGATGGACGTGATCACGCTGC
GACCCAAGTTTGGGCTTCCCATGATCCTTAAGAGCCTAGAGATGTAGAGGTGTGTTGAGT
ACAACACAAGGTTGTTTATTTATTGGTCTTATCGCAAATGTATGATTTTGTAAGAAAATC
CATCACGGCGCACTTTTTGTGAATTAGATAACACTTACATCATTCACAAGTCTCATATAT
TAAATGGGAGTTGGTAGCGTCGCCTACACCTCCTCCTCCGGTTCTTTCCTCCTCACGTAT
TCGCCTCCACTTTGGTTTCCTTTTGTTTGCTTTTTAACACAACAAATGTCGTACAAAATA
AAAATGACATAAACAGAGTAATTTGAAATAATCAAACAATATTGATATTTTCCGAAATCA
CATCATGCATTAACTTAACCAAATCAAATAAAATCATTGCTTACCAAAATCTCAACTCAG
TCAATAAATTACTTGCATACCCATAGCCAAATCAAATTAAATCTTATCAAAACCTCTCAA
AACTTTCCTTGCCTTTCCCTACCCAAAACAAATCAAATTAAATCTTATCAGGCGAGTGTA
CCGTATACGTCGGACATGATTGACATTGAATCGCTAGAATATTTATGTTCCTGTGAACCA
ACCTGTGGTTGGATGGTTGTACTCATAGGGGTAGGGCGCGTGTATATGAACGCTTCCATT
TATGCTATATTAAGAAAAAGAATATTTATGTCCCCGTTGCAACACAAGGGTATATAGCTA
GTTTAGGTAAAATAAAGCTAGGGGGATCATGGTCCCAGTTACATGAAATAGCTCCATCAT
AATAATATCTAGCCAAAGTGTGCACCACTTCATTAGTTTCTGGTTATCGCAAAGATAAAT
TAAGTATAATATATGTTTTTTATTAAAAGCCATGGATTTCTGAACTCCAACCATTTTTTC
CTCTTTGGCCGAAAAGTCCACCTTTCATTTTCTTGAATCCACTCGCAATGTATAGATCAA
CCATAGTTGATGTAACCGTTTTCTATCAATACTAACATACGGGAAGGGAAAGATACATAC
ATACAACTTGCTCCTATTTCCTGCATTTTCCAGAATCTTGCTGAAATTACACAGATTCTA
TACTGCACTTTTTGGCAGGGGGTGTACAATGTAATGTCAACATTTCGAGTCTGGAAATTG
GTTTTGCTAAATGTTAGCTAACTAATTGTTTTCATCTCCCAATCGTGTATGCACAGCTTC
CTAGGGTACGTGCAATCAACTTGAGTACATTTTGTTTCGGGCCAATAAAATTGCCGCTAA
ATCTCGCACTTTCCTAGAGTCATTGCAAGACCTAAGTTGAGAATCATTGCAATGGCCTGA
GTGGAGATGTAACGGGGTGAATAGCTCCCGTCCGACGTCGTTGAGTTGTATTATCTCTCA
TGCGACGTTGTTGGTTGTAATAGCTCTAATGCGACATCTTCCAGCGCAGAAATAGCTCAA
GCAAGACAACCCGTTTACGGGGCTAGCTGGCTGTTAGTTAGGCTGAGATTTGGTTATGAC
ACTGGGGGTTATGTGCTCTGACTGGTGGGGTCCACCCAGGGCCACGTCGTCAAGAGTCAA
CCGTCCATTATTCGACTGGTGACTGTGTGACCGTGCTGGACTGGGCGAGCGGCGCCGCCG
TGAGCATCTTCTCCGCCAGAGGCAGCGGTTTCTTCTCAGCGGTGGTGGAACGCCTTTCTT
GGCAGCGGTAGAGGTATTGCGAGTGAGTATTTTTGAAACCCTAGTCCCATTTCCCACAAT
TTTGGATAGATCTGTGGCCTCATGCTCTGTTTCTCCCGTTTCTTGGCGATTTAGAATCTC
GATTGGTTAGGAGCATGGGGTCTGAATAAGATGGAGCGAGGAGACAGTGGTTCAAATCGG
TAATGCCGCCTTCTTTTCTCTTTTAACTGTTATCGAACTCGACTTGGTAGTGACTGTAGC
TTACACTGCCGCTGCCCGCCATTGACAAAACAGGGGGCCCCAAAACAGGGAAGGTTCCGG
TTCTGACAAAACAGGGGAAGTGCAAGTGGACACGGACCTACTTAAGGAAGAGAAGAAGAA
GCTGGAGTATCTGATTGCTGATCTGCTAAAAGCTGGGCATTGCACCAAAGATAAGCTAGA
GAGGATCAAGGCAATAGTGGATGAGTGAAGTTCTTTATGTGTGTGTTAAGTATTAGGCCT
ATATATATAGCTCGCCTTGAAATGTCATGCATGGTAGGTGTATATTTTGGGGAAGTGTCA
TGTGGTTTCAGAACCTATGCTATCTGGGACATGTAATGACTTTTATGTTAAGATTCAGTA
ACTTAACTGAATTTTGGACAGTTTATCTAAAATTCAGTAACTTAACTGAATTTTGGACAG
TTTACCTAAAATTCAGTTACCATCATACAACATGCACACTGCAACAGAGAGAAATATAGC
AACATAATATGCAGTTTCCATCAGTTACTAGTACTTCTAACATAATAGATAGAGTACTTC
CCATCCAGTTCACATCATACCAAAAGTAAAAGTACTTCTAACTTATATNNTGAAATATAG
CAGCATACCTAACCAGATTACAAATTCCATTACTTATAACTTATATGTTGTAATATATCA
GCATACCTAACGGGATCTGTAGTACTTCAGTTCTTCTGCAGCTTCTTGAGGCGCTCTGAT
CGGCGCACCACACCCAGCACCTTGTTCTTTGGCTCCCTCTTCTTCTTCTTGTCCTTGTCC
CCCGCTTCATCCAGCACCTCCTGCTTCACCACCTTCTTCTTTTTGGCAGTGAAGACTGGC
AGAATGATCTGCAC