Contig Data
morexGenes
Links



Map Locations of contig_275920 (3346 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_275920

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44984 7 3110 bp MLOC_44984.1 Available Available LOC_Os05g03550.1, FRAME:-1, EVALUE:5e-113, 13105.m00345 protein MYB family transcription factor, putative, expressed





CDS Structure of MLOC_44984






Contig Sequence (3346 bp)

>contig_275920 3346 assembly3_WGSMorex_rbca.fasta
TATGCCACGGAGAAGCCGGTAATGACGGAGAGTGGCCAAGTGTAGAGGTGTACAATGACA
CAATCACCGGTGCACGAGAAGAGAACACGGTAAGAGATGGTGAGGAGTGAGATATCCTCC
CACCATATCGCCAACAGAAGGGGCACATGTACCCGAAACCAATACTCCTGCCTAGGAGCG
TGAGACAATTGTCTCTAAGGAACTCGGCAAAGTCCCTTATTTTGGGGCCTATGTATGGGG
ATTTCGCAGCGGTCCCAGAGATGCTCTTACAATAATCCCAGATTTTTTGCATGCGGCCCG
ATCTCAATATTATTATTTTTTGAGTACTATTTTGAAACGGGTCTCACAATTGTATCTCCT
CTGGCAAAGCCTAAACCTAGCTACCATGAAGGTGCCCATAATAACAGAGGGAACGTTATC
TGCCGAACGTTCTGGAAGCGTTTCCTCAATGAACGCCCCAAAGTTAACATGCCGACTTTG
CAGGATTTGTCACACGTAAATAAAAAAAATGACAGAAAGGTTGCCATGCCGCGCAGAGAA
ATTGCCAACCATTTGATCGTGATCCGACGACGACGGCTTTGAGGGCGTTTGCTGGGATGA
CTAAAAATCTGATGTTCCCTGGGGTCTGTGGACCTAATAATATATCGTCTTGCAAATATA
CTGGTTTTCTTGGGGGTGAAGCTATTCCTGGCAAGCACATGATGTGCCGGCTATTCCTGG
CAGACCATATGACCCTACACTACACACCGGGCCTACCTCGCCCCGTCGCCCGCTATTCAT
CTACAGGAAGGCTGGACCGGTTTGGCATAGGCATCACCGTGGCTCAGTGCACACCTCTCC
ATGCTTTGCCTACTATTCAGGCTGCTTCCGTAGGTTCATCATCCAGACAATCTGAGATGA
GATGGAGATGAGCTCAAGCTGCAAGGATCCCTTCGTCTCGCATAATCAACATCAGCTCTT
CACAATCTCATCAACCATGAAAAATTACTTCTTCGTCAAAGCGCCATACCGGAGCCAAGG
CGCAGCGGCCAGTACAGAACGACTGATGATGCCCAGCGACGAACCAGGAGAAGAATTGCC
AGCCAACAACACTTTGATCGTCTCGTCTCAAGCATCACGCTGAGGCTGCTCGTGTCCAGC
AAGACAGCAAAGCAAGCACATTGCATTTCCCTGCAGGCAGCAGCTGGTTAAAGCGATGAA
TGAATAACGTTGGGGATGTTACAGGTCAACCATGATCATCATCAGAAACAACAAAGCAAG
AGAAGCAAGCACAACGAAGAAGGCAACCATATAACCAGAACTCCAGCAGGAGGGAGCTGC
TGAGTTGAGCATCATCAACATTACCATATTACAACCATCTGTCTGTGAGGTTTCTACATG
CATGCATAATAAAACCGGATACATAAATAATAACAAAGCCCTACCGACAAACCGCCTTTG
TCGCCTCTAGCAAAACCTACAGCCACTGCTGGCAACATCCAAAAAAGAAGCTACCAAAAC
AAGTATGATGAAGAGTTAATCCCACGACAAAAGAAAGCCCTACGACGACGACGATATGGA
CAGGAAAGCCATTCGCTTTCCCTACTGTTGTTTTAGTTCCTTCCATCCCAAGTTACAAAA
ACTAAATATGGTACAGGGAGAGAGAGCAAGAAGAGCATGCACTATTTGCCCCGCCTAATG
CTACCTGCTGGTGCTGCTGCTGCTACCTGTTTCCTATGTCTTTCCAGGGGTGGTCGGCGT
CCTGGCCCAGGAACTTGGAGCTCGACCCGTACTGCGCCTTGAGGGCCGCCACCGGGTCCG
ACACGGGGCTCACGAGGATCCCGGCGCCGCCCAGCCGCGCGGCTTTCCCGGGCTGCTGCT
GCTGCTGCTGGAACCCTGAGATGAGCTCCATTCCGTTCCTCTTCTGGAGATCGGCATAGC
TTTCCAGCCGCTTCGGATCTGATGGCAGCTGCTGCCGCAAAGGCTGTTGGTACTCTCCAA
ATACGCCCAGTGTGCCATTTTTAGCCGAGTAAAATGGCACGCTGGACAGTGATGATCTCT
GACATTTCGCCGCCCTGAACAAAGACGACTCGGGCTGTACTGTGCTCCCATCCAGGTGAG
TGTAGCTCCTCACCACTCGCTCGTCCTGCCCCAAGTGGGCGGTGTTTGTGAGCCTAGATG
AATAAACCATGCGATCCATTCCACTGCCCAACAATCCTGCTGCCGTTGACGCGGGAGGCT
TGCTTCTGGTTACATTCGATGATGAGCCAGAACTTTGCAAGGATGATTGATGGCTCAGAA
TTTTCCCAAATAGCTTGACATCTCCGGGGCGCTTCACCTGATCAGAACTCTCAGTGCTTG
CTTTGTGGGAACAGGGCTTCAACTGACCTTCCCGTAATTCTTTGCTGCTCCCATTCATCA
GAAACCCAGCAGATGTACTTGAGAGACCTGAGCTGCCCGACCTGCCATTCTGGTATTTGG
TTATTGTGAACTGATCCGGATGAGAAGTTCCCACACTACCACTTACAGTGCTATCAGAAA
AAGCGGGCATGTCAACTGCAAGATGACGTCTGTGCTGCAGGTATCCATCAATATTGCGGA
ACAGAACATCATGCTGGCTCCGAGATTGTTCATTAAATACTGGGAACTTGTTCATGTCCT
TGGGCCCTGGAGTATTGCTGACTCTGTTGGCATGATCACCAAAATTTGGTGAAGTTATGG
AGGCTATGCCCTCAAAACGAATTGAGGTAGGATCAGGAAGGTCAGAACTAAACTGAACAG
GCATCAAATCCTTTGGAGTAAGAGGGGTAACCTGTGGTTTTGGCTTTGCTGGGAGCAGAT
CTGTTGGCACAGTTTGCTGATAACTTGAAGTAAATGCAGGCCTAATACAGGAAACACCGG
CCATGTCCGAGAATTGGGCGACATTGTCCTTGCTGCCACTTTCTCCAGGTAAGCAAACAG
AGGGAGTTGAATTTCCAGCTTTCACGTGTGCACTCTCAGGTGCATGTTTTGAAGGTCCTT
CAATACTGGATGCCTTACTAGAGTGTTCTCCAGGTAAGCAAACAGAGAGGGTCAAATTTC
CAGCCTTCATGTGTGCACTCAAGGGTGCTTGTTGCGTAGGTCCTTCCGTACTGGATTCCT
TAGTGCAAATCCCTTCATACACCTTGCTCGACTGGATGACTCCAGGTAAGAAACAAGGGG
TGGTTAAATTTCCAGCGCTGATAGGTGCACTACTCTCGGGAGCATGTTCCCTGCTGGATA
CCTGAGTGCAAATCTTTTCAGACGCCTTGCTCGGCTCAATAACTTCAACATTGTGCAGAC
TGGAGCTGATTTCCAGATGTGCTCCCACAGGCTGCTCAGTTGAAGA