morexGenes - Barley RNA-seq Database

Contig contig_275893

Source Contig contig_275893

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_275893 (4028 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_275893

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44971	1	146 bp	AK368249	Available	Available	None
MLOC_44972	1	867 bp	None	Available	Available	None

CDS Structure of MLOC_44971

CDS Structure of MLOC_44972

Contig Sequence (4028 bp)

>contig_275893 4028 assembly3_WGSMorex_rbca.fasta
TCGTCGATCAGTTGATCGAGAATTGACGATAAAGCAGGGGCAATTGGACTAAGGGGGCAA
AAGGGGATGACCCCTCCACCTATACTAAACAGTTTTAAGGTGCAGTAGAATAATGAAGCA
CTTTATCAAAAACAGTCTATGCATCAAATATAGGAGCTAACTNNAACAGTAGCAAAAATT
CTAATGCAAGCATGAGGGAGAAAGAATAGGCGATATAGGTATGATCAAGGGGGTTTGCTT
GCCTTGTTGCTGTGCAGACAGATACGGATCCTCGACCGGAAAGTAGTCGAACACCGGATC
ATCTATGGTCTCGGGCTCTACTGGGAAAGAAGCAACGTGGGGAAGCACAACTTATAACAC
AACAATCAAATGCATCACAAAGCATGACATGGCTATAGGCAGTGCTAGGCATGAGCTAAC
GCAGTACTACACGTCATGGATAGATCGGAAAAAATATCTGACGATATATCCCTGGTCTCT
AGCTACTACCGGACATCCGAAACAGATGGAAAAGTTTTACGTTCGCTATGCTAGGAACGC
GTGACAAACGAATGGATAGCGTATCCGGGTTCGTNNNNNNTTTCTGATCAACTTTCATGT
ACAAAACATTTTCATCCGGATTACAGATTATTTTATATGATTTTTCAAAGATTTATCAAT
ATTTTAGATTTATTTATTAATTCAAATTTTAACAAAAATGTTGTTATTACACAGTAGTGG
GCTAGCCACAGCCAATGACAGGTGGGGCCAGGGAGCTGAGTTGACCCAGTCAATATTTAA
CTTGTCAACATGTGGATAGTAGAAGTGGATCCGCATGTCATAAGCTATACCTAAACAAAT
AAATAAATACTAACCTAAGAAATGGTGTCGACGTGCCATCTGCTAGTAGCTTACCTAAGT
ACTACTCCTACTAATTAACCTAAGCTAACATGGCCGGCCTCATCTAGACACGAGAGAACC
AGCCGATCCCTGTGTGTGCACGCATGGGCATATGGCCACAATGGTCATTTCCATCGGCAA
CAGTGGTATAGGAGCAGCAACACAGCAGACATCAATAGCAGATGCATAGCAAGGGAGTAG
CAGCTAGAAGCAGAAGTAGTTAGCACGAGCATAGCAACAACAGTAGGCAGCAGCGCAGCT
GCATGCAGTAGGTAGGGTGGCAGCAGCACAGCAACAGAGCGCGTGCGTGCGGATGGCGCG
GAGGAGCAACAGGTATCAAGGAGGCGCTCGCGGACGGCGCGCGGCGGCTAGCAAGCAGAG
CAAGCAACAACGAACGGCAGTAGCTAGCGCAGGCGCGTGCCAAGCAGCTGTACCGGCCAA
CACGGGGGCAGCGGGCGAGCGCCTGAGCGCGACCAGGGAGCAGCGTGGGGGCAGCTGCAG
CGGTAGGCCACGGCAAGGCCACACGCGGGCGCGCACGTACATATGGACGGGCTCGGGGAC
GGTAACTACGGCGGTGACTCGAGGGGGAAAACGGGGGGAACGTGGAGAGGAGCTCACCAC
AGGAGCACACGGAGGCTCGATGAGGGGCAGGAGAGCAGGGTGGCAACGAATTTGACGGAG
GCGTCCGGTGTCCCGAGGTTGAAGAAGACAAGCAGGGCGACGATGCGATGTGGCTCCGGT
TGAATGGTTGTGTGCGGGCGATGTAGACGTGGACGGCGCAGCTGCTAGCCACCTCCATAG
GTGCGGGGAACGACGATGGCCGCGGGGAAGAGCTTGGCCATGGAGATGGCCGCATCGGGG
CATGTGCGTGGAGTGAGCAGCGGCGCGAGGGAGAGGGAGGAGAGGCTAGGGTTCGTCGAG
GGGGTCGTGAGGAAGGTCTTGTATGCGTCGGGGAGGGGGCGGATGGCCGCCACGCACCCG
AAGGTGTGGCCATGGCCGTGGATGCGTGCCACGATCCCCCTGCCTCCCTGTAGCAGGAGG
TTGGGGATGACACCAGTTAGGCTGGGCCACATGCAGTGTAGCAAGTGGGCTAGAGTACAG
AGTGAGGATTTTCTTTTATCCTTTTTATTATTTACTTAGGTACTGTTTTGTAGTCAGTTC
GTGGACCAAATGCTTTTTGTTGAACATACAATTTGGCACATAAATAAAAGACAATATTTT
GCAGCGGCTCACAAAGTTTGGGGAAAATTGGAAATGCATACATATTTAATTATTTTGGAA
AGGCTATTTTATTTGTTGATGGACCAGTTTATAATTTCCTACGGGTCACATTCTGGTTCT
AATAATGTTGGGTTCAACATGAAATTTCTTTAGTAAATATTTGCAACTGAGTCAACATTT
TTATTTTACATTTTGATGAAATAATTTATTTGACTTTATTTTAAATTTGAATTTGGCCTT
GATTTTCATCGAGTGGGAACTTGGTTTACTTAACCTTGATGACATGGCATCATTAGCGTG
TGATAACTATAGCTTAACTACCGGTGCGTCACAATGATTGCATCTTTTTTGTGTTTTGTT
GTCGCCGGTTGAAGCTTTTTATATCGCCGGTTAAAGCTATTTTCTAGTCGGTTGAAGCTT
TTTTCATCACCGTTTGCAGCTTCCGCAGTTGCGTGGTGCGTGGCCCTCGATTCCCATCGT
CTTTGGTTGAAGCTTTCGACAATGCGGGTTGTAGCAATTTCGATCTCCGGTTGAAGCTTT
TTTCGTCGCCGGTTGCAACACCGTCGTCTTTGTCATAGCTTTTCGTCTCCAACACTGGTG
GCATCCGATGCGAAGGAGTGGGGGATTTGTTGAGAAGGTGACGTGGGAGGCGACGACCTG
TTCGTCGGAGGAGAAACAGGAAAGGGGATTGCCCCCATGCTGATGGGAAGGAAAGGCCGA
CGACTCCATGACGGCCCGCGGACGAGATCCGACACGGGAGGCTCGTCAAAAACCGCGTGA
GCGGCGAAGAGATTGAAGCACTGTCGGGATCCACCGTCGTCGCCGCTCGTCATCGTCGCT
CAACGTTGCTCGTCGTCACCGCTCGCCATCACTACTAGTCGCCCCTCGCCATGCTGCTTG
CCGGTTGCAACACCGGTGATGGAAAGAGGGGAAAAGCAGGGATGATGGACCAAGGGGAGC
TGGTGACACGTGAGGAAGGGTGCAATGCGTGCTACCGCGCGATGGGAAAGAATCCGACGG
CCCGCGTGCGTCCGGCGCAACGATTCGACCATCGCATGGGGTAGAAACATTTCCCGATCA
GAAATAGCACCAACCACGTAAAAATAAACGTGCCAACTATTGTTCCGAAAAGCATCCAAT
TGGAATTTTAGAAATGAAAATGTTAAACTACAGACCCTTACATGACCTTTACGAGGACCT
TCCCTCTAAGGTCGTGTTTGGTTCATTGTTTCTGTACCGTATTAAATACAGGTGTATCAA
AAATACCGATGTAACTTACAGATCCATAGTTATTTCCAAACGGAAAGCAAAATGATGGAT
GGACATCCGTTTATTTCTTACCAGTGTATTTAGCAGCAAAACAACAATCCAAACAAGGGC
TAGTACTCCCCACCAATGATTTTCAGGTCGGTGGGGCCCTTCCTCACCTTAATCCAACGG
TAATTTGACAGGTCAAACCCAGTCTGTAAAACCCCGTAAGGGTCTGTGGATGTAGCATTA
CTGTTTTAGAAAACCCGCTCGGATCGAGCTTCCGGATCCAGGCCGAACGTGCCCTAATTT
TAGGTTCCAACTTTCCCCGATCACTGTTGCCCTAATTTTCGATCCCAGCTTTCCCCGATC
TTCGCAACCCTAGCTATCCATCCCAGCTTTCCCCGGTCTCGACTCTCGATCTCGAGTTTG
TGCGCAGTCCGGCGAACATGGCGGCGATAATAGCGGCCCTCGGGCAGGAGCAGGAGCAAG
ATTTCAATTTCTTTGTGGTGGTCGACTTCGAGGCGACGTGCCTCAAAGACGCGCGGATCT
TCCCACAGGAAATCATTGAGTTTCCCGCTGTGCTCGTCGACGGCGCCACCGGCCACATCG
AGTCCGTTTTACGCAGGTTAAAGTGCATGTTATGCCCCTAATCGACTTTTGGTGTTAATG
ACAACACA