morexGenes - Barley RNA-seq Database

Contig contig_275716

Source Contig contig_275716

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_275716 (3796 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_275716

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44924	5	2590 bp	MLOC_44924.2	Available	Available	LOC_Os01g24820.1, FRAME:-3, EVALUE:1e-57, 13101.m02629 protein NB-ARC domain containing protein

CDS Structure of MLOC_44924

Contig Sequence (3796 bp)

>contig_275716 3796 assembly3_WGSMorex_rbca.fasta
CCTCATGCAGCCCAAAAGCTCAGCCGGGCATGGAAAATCCCGTGAAGCTCCCATCGCCAT
GCTGTAGCACTGCGGCGTCAACGCTGTCATCCCCGCCGTAGGCCAACCGGAGGCAACAAG
ACAGGCCCGACGTGACCCAGATCAGGTCCTAGGGCCTAGATCTGGGCTTGTAGGGTCGGA
GCGCCACCACTGCTGCCCAGTCACCAACGTCAACACCACGCCACCAAGGCCACCCATGCT
GTTTTTTCAATTGAGGAGCTTGATGGTGGCTGCGTTCGCTATGGTTTCTATGATCTTTCT
GTTTTTTTCTCTTTGTTTCTTCAACGGTTTTTTGCCTGAGGCCAGGGCTGGCGGCCGACG
GAGCACCCGTCGCGAGATCCACTCCATGGCTCGACCTCTCTCTCTCTGATGAGTGATGAG
TGATGACTGACTCTATCCGTCTGCAAACGCGGTAGAAATAATCGTCGAGAGCAGAGGCTG
TCACGTGCACGCACAGAGACGCTGCCCTGTGGTCCTTCACTCGACATGGTCCCAGGGACA
GCTTGGACGAAGTTGAGGTCTGAGGGATATCAGAGAAGTGGATCAACATGTCTAAATAAC
AGGAAAGTGGATGACATCGGCCTCTCGCCTTATCTTAGTTAAAGCAATTTCCAGCTCTAC
ACAAAGAGAAAGATGATAGAGATTGTAAGCTGGAGAAAATGCAAGGAAAACCAGTGAGAA
AGAAATGCAAACAAAAGGTGACGAAAATTCAGATGATCTCACGAACTGAGTACTGACGAA
ACTCGACTCTCCAATAGAGGGAAGAAAGGAGGGAAACGATCGACCGATCACATTCCGGGT
ACACACAATCGCACAGACAGAGCATGCACCTGATCAAGGGGATAGAAACAACTCATCACT
TCACATGAAAAATGAATGTGGTACTTAATCTGAATTTCTGGCTGGTACTCCCTCTCATTC
CAAATATAATTTTTTTTAAAGATTTTACTACGGACTACATACAGAACAAAATGAATGAAT
CTGCACTCTAAAGTATTTCTATATACATGTATATATAGTCCATAGTGAAATCTCTAAATA
GACTTATATTTAGGAATGGAGGGAGTAGTTTTTAAGTCTTTTTCTTTTTGCGGTGATGGT
AGTAGTTTTTAACTCAGAAGCGGACAAAAGTAACCAACTTGCAGTGTTTCTACAGAGCCA
GGAATTAGTAGCCCAGAACGAGTGACAATGTAGAAAAAGTACTATAAAAAAAAATATACT
GCCTCTGTTTTGGTGTTGAACTGGGTTTCAGGTTTTCAGCTTCGGTTAGATTTCTGTTGA
AACAACGTCATCGGATCTCGGCTGCACTCTCGGCCAGAGCTGGCTAATTATTGCAGTGGA
ATACTAGCAGAAACAAACGAACAAACATCTGTAGCTCAACGGCGACAAGAGGGAAATATA
CACACACACAAACAAAAGCAAGTTTGATGGGGGCAACGTAAGAAGATACTGTCATGATAT
CTGTCTACATGAACTTACTGAGTTGGTAATAAGCGGGTCTTCATGTGCATTACATCGCAT
GATTTGCATCATCGCAAGCAAGAAACATCTAATTTGCTCCATGTATAATTACGGTAGTCA
TTGAAGGGACACCGAATCATTATTTCATCCAGAAAACACTGCATCAGTTCAGGGCCAATA
ATCTCACAGATTACTAGATGATAGCGAAGGCACACGGTACTATGCAAGAGATATTCAAAT
TCCAGTTGTAATCCAATACAAAGATGTACTTAATACAGGCCTGTTTATTTCATCATGAAA
CCAATACGGAAAACTGAACCGGACATTATAGTTTACGAGTCTAGAACAAAACATTGAACT
GCTCCAAATAAAGCGGAATGAGAGCAAGCAAACAGTACCAAGCAGTGCCTCATAAATAAT
GGTTCATCGAGGGCGAAACACACAGGGAAGGCGCCCTCAAACATAATTGTTCTTGAGTTG
GCGGAAGTGTGAAGAGAATCCAAACCAAGGCAGACAGAATGAGGAGGTTCATCCGGATGC
AGAGGGAGACAGGTCAAAGAGCAGAATACAGGAGGAGTTGTTGGAGGCACCCATGATTGA
ATCCATGTCGACGACACCTGTAATGCCATTCGGAAGAAACACACAAAGAAATGCTTCAGT
TCAATGTCTCAGAAAGGAAGAAACCAGAGTTCATCAAAGTAGAGAGAAAAATGCACACGT
ATCAACAATTCAGTATTACTGTTGGGTTGTCCGTTACTAGTTTTGATCGGGTTACATGTA
ATATTGTAGCATGTATAAATAACAAGACTTGTGCTACGTATTTTTTGCAGCATAAGTAAG
TAACCAAAGCGGGAAGTCACACTGGAATATTCTTGACACTTCAATAAGTGGTAACATTAG
TTTCAGGGATCTGATTGAAGTACGTACACAGGCTAAAGAAATGATGAAACAATAGTTCGA
TCGGTGCTAGTAATTAATTGATGAAACAATAGTTCGGTGCTAGTAATTAGTCAAACCCTG
AGAAAGGTATATAACCTTGTTGTCAAAGCAAAGGAACCGGAACGAACCTTTACTGCGTAC
TGAAGCGAAGGACGGGACGGTTGGGGTGGCCATCTGCTGCGGCCCTCACCGCAGCCTTCG
CTTCATCCACCTCCTCCTGACTGCTAGCTCCCTCCATAACATCAACCTCGACTCGCTCCA
GGGAAGGGAGGTGCCGCATGCCCAGATCAAAGCTTTCACGGGAGACCCACTTGGCTGGGA
AGGCGAACCAAAGGACTTTAAGCCTTGGCGCAGCTCCTTGTGGAAACATAGACGGCACAG
CACCTATACCAAAGAAGCGGCACTCTGTCGCACATGGGAATAACGCACCAGAGGAAAGAA
CGGGCGCTTCCACCTCATGTCCTTCCCAGTACACAGAATGATTCATTATCTTAAGATAAA
CAAGAGCAGGCAGAGTCCCAAGAAGCTGGATGGCCTCCGATCGCACTTCAAACACCGTTA
TGTCCAGATAGGAGAGGAGAGGAAGCGATGAAGGATTAATCCATGACGGCAATGTCTTGA
ACCAACTATCACTTGACGGGAAAGCCAATCTGCGGAGTTGTGGAGGAGCCACCCAATCTT
CGCTCAGGCAATTGATGACTCCACGACGGACATATACATCTAGGCTGTCCAGTTTGTCCA
TATTACCAATGGATTCCTCCAAAGCTTTACCCAGGCTCTCATCCAAACCATCCAAGTCAA
GCCGGAGCACCCTGAGCTTGGTCAGATGGCCCAATTCTTTCACAAAATCAAGGTCCACTT
CAGATAACCCCAGGTCATCTAGCACTTCTAGGGAAGTCAGGTTACCTATTCCAGACAGCA
CCATACCATAATCAACATACAGGCACATTAGACGTCTTAGCTGAACAACACTCGATGGCA
GTACTCTTATCTCAGTACCTCTTAAGTCCAGGGTAAGCAAAAACTGCAACTTCCCTATTT
CCATGGGAAGGTCCTTAACATGAGTACCTTTTAGCCCCAAGTACCTCAAATGTAATAGTT
TCCCCACATACCCAACATCTGAGACATGAGAACCTTCTAAATCCAACACGCGCAGAACTT
CAAATCTTGAAATATCCAACACTTTCCCAACAACATTATCTGAGAAAACAGTAACAGATC
TCACATGCTCCATCCTAGTGGTACCCACATCTATCTTGCTATTTTGAATGGACAATCTGC
GAACCTTTATCTTTGAGTTACCCATTTTTCTTCTAGTGTCATCTAATATCGTGACAAAGT
TCTCTTCACTTGACAA