morexGenes - Barley RNA-seq Database

Contig contig_275697

Source Contig contig_275697

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_275697 (1689 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_275697

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44911	1	1002 bp	MLOC_44911.1	Available	Available	LOC_Os01g47690.2, FRAME:+1, EVALUE:3e-45, 13101.m04935 protein metallo-beta-lactamase family protein, putative, expressed

CDS Structure of MLOC_44911

Contig Sequence (1689 bp)

>contig_275697 1689 assembly3_WGSMorex_rbca.fasta
GGTAGAGAACCATTTTAATATGCTATTTTGTTTCGCCTCCTTCTTTCATCTAGTAGTTAG
GATGTGCTATAAATTACAGCTTCTGTATGCCGCAATACTAGCACCGGTGTCTCCAGTGTA
AACAGCTAATCTGAACTACAGAAAACACTGAGTTCTTCTGCTTGTTTGTCTTTAAGAAGC
TCCTTGCAAAGGTCACCATGCTTACAAAAATCACATCCTAAATGACCTAAAAAAACAGCG
AAGCTGGCCACAAAAACTACTATCTCTATAAACTGCAAAAACGTCTTACATTAAGTTACA
GAGGGAGTGCCAAAGTATGAAAACTAAGGAGCCAAACTAAACAAACAAGGTTGAGACTAA
GATAGTGCAGCTTGATCTCACAGGGTTTCATCTTACAGAATTCATTATTTAACTATGCCA
TTTTCTTATACGAGCAAGACGATCTACTGTTCTACCTGCAGTAAAAATTAGAAGAGAGTG
CAATATTATAGGTTGAACTTATACAAAAACGAATTACATTTTGTTTGTAGAAAATGTGAC
ATATCCAAAGCTTTTAAATTATAAGCAAAATGTGCAATCAAGTGCTGGGAAGAGCAGCAG
TCAAATCATTTATGTTGTGGTTTGTCTTTCAGGAGGGCAATGTTCTCATAATACTAGCTG
ATCAAAGCTATTAGTATCTGTAGATATGATGAAATTTCTAATAGCAGAAACATTGAAATT
CTTCCCAGGTGCGAGCTACTCCTGGCCATACTGCTGGCTGTATGACTTATGTAACAGGTG
ATAGTGATGGTCAACCCTCACCAAGGATGGCTTTCACTGGGGATGCCTTAATTATACGTG
CATGCGGAAGGACAGACTTCCAGGTAATATTGTGACCACGCTCACTTCTTCATGATCTGG
AAAACAGGAAAGGCATATCTTATGGAAAAGCTAGAATAAACAGGAAAACTATATCTGAAG
GAAACACTTCATATGGAGAAGTATTAATGGTGTTTTGGAGCTAAAGACTAGTTTTTAGGC
ATTGAAATTCATTGTCTGTTATGCTCCATAGTAGCAGTAGCCTGTGATTCAGACATAAGT
TCAGCTTGCACTGGATGTTTGAATTTTAGAGAAAATTCTGATATGGCCAAAGGTAATTTC
TTTTGTATTGATAGTTTGTTTTTATTCCAGGGAGGAAGCTCCGATCAGCTGTACCAATCA
GTGCATTCACAGGCAAGTACTACATGAAAATCTTGTATTGGTGTCATACAAACAAAACTG
CAACATAATGCATCTATTTATAACTAACTTATGCAAAAAGACTTTTATTGATCTACCAGC
CTCTGCACCAACCAAATGGATGCACACTGCCCAATGGATTAAACTAACTGAAAACTCTAT
TCCTTAACAGATTTTCACGTTGCCAAAGGATACCCTGCTTTATCCTGCTCATGACTACAA
AGGTTTCACGGTAAGTGGCTTACTGAGCATCTTAAATTTTGGCTTTCAAGTTGCTAGTTG
CTTGAGTTAATATACTATCTGCAGGTAACTACTGTTGAAGAGGAGGTTACTTATAATGCC
CGACTATCAAAAGATAAGGTACCGGCTAATTAGGCTAAAATTCTTTATTGTTTACCCCAT
AAAAGGTGTCAGTTCGTTCCTAACTATGTCTTGCATGATCTGCTTGCAGGAAACTTTCAA
GACGATCAT