Contig Data
morexGenes
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Map Locations of contig_275542 (4748 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_275542

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44852 2 1735 bp MLOC_44852.2 Available Available None
MLOC_44853 2 1263 bp MLOC_44853.1 Available Available LOC_Os05g04170.3, FRAME:+3, EVALUE:5e-22, 13105.m00413 protein AMP-binding enzyme, putative, expressed





CDS Structure of MLOC_44852






CDS Structure of MLOC_44853






Contig Sequence (4748 bp)

>contig_275542 4748 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGCGAAGCACACCTCTTAACAAAAATATATATGAATCGAGATTTT
TAGGAGCCTGCAGAATTTCGTGGTAAAATGAGTTCTGGAATAAGAGAAGAAAATCCGAGC
ATCGAAAAAGGTGATGTTTGGTACTAGAAGAAGAATTACCTGCTCTACTTCCTTTGTAAG
CTAATATAAGACCTTTAGATCAGTATCAAGTTGACAGGATCGCGAATGTGAACGCCGAAG
ACCGAACAGCCAGCAAACAGGTATGGGGGACTTGTTTTCATTAATTACTTTGTACAATTG
CCGAGTACGTGCAATGTTACAGCCGGTCGGTATAAGAAAGCATGATCCGTGGATCCCAGA
GTTACACAGACATCTCCATGTGTCGATCTTTAATTACCGGATTCAATGGATTCAATATCG
TGTACTACATCCTACACTGACCAAATAAATGACCACACATGCTCCTTGCTACTCGTTGCT
AGCTAGGCCACGGCCACGGCCTATGAATCAGGACGCGGGAGAGCCCTAGGTAAACCATGC
CGCCGCCATCAATGGCGTCCCGAGCTGCAAGCTCACACTGGCCACCAGTTGCACCGTTGT
TACCACGTGCATGGAGCACTAGCATGCATGGTCGACGTGGTCAAGTTCAGAGAATGTATC
CATGCACTACTGACCAGCCAACTAAGATGACCAGCCCTGCATGCATGTTCTTGACCTCTC
CTTTCCCGTAAGAATATTTCACATTTCGGATGCGAGTTTGAAAGATTCAATTGCATCCCC
CGCGGAAGAACAAGTTGCTTATCGGTAATTATGAATAGAAAGATCTAGCTTGCAACGAAC
GTCAACTTGCTGATCCTAGTCAAGCCAGAGTTTAAGAGACCCAGCCGCCTAATAAAGAGG
GTGTCAAAGGTCCAGGTCAAGTTGGTTGACGTAATCAGGATTCGGTGACATCGGTCAACC
ACCCTTCCTGCCTGGAACGCTAGAGGTCAAGGGCGTGCTTTTCTAGCAACCCCGCAATCA
TTTTACAGTAACCACAGCCGAGTTAATTAGCTTAGCCAACACCCTGGTTCGAGCAAATTC
GGTCTTACCCGTCATACCAGAAACAATACCATTTCATAAACAAACGTAATAATTGTACCA
TTGGTAGCAAATGAATTGGAGTGGTAGGCGAGTATGATCAATGGGGGTACCTGCTGCCTG
GCTGGGGACATCCAATGCCAACTTCGCCAGCTGCAAGCAAAGGTCAGGTTACTGGCAAAG
CTAGTGAGCGGACAGCGAGGTATTTCTACTGGGAGCTGAGCTGATATTTTTCTTTTAATC
CTTTTGTTGTACAATCATTCAATCGGTAGAGCTTGGTAGGTTCAGACTTTACTCGAACGG
GGTCCTGCTATTAATCAGAAGATCCGTCAGAAAGTGTTACTAATAATTCTATAACAGTGA
TGTAGATGAAAGAGCAGTCTGACAGCTGACGGAGAACTTCCCCAAGAGGAACCGGTAACA
GCCATCTATTATCCATAAAAAGGCACGGAGAACTTAATGGTGCTACCTTCCAACTAAAAG
GGGCAAGTGAAGCTGATGGGTGCGTGGGTCGCTCATCGCTGCGTCTCTGTCCTCTCGTAC
TGCAAAAGATTAGACATTGCAGTTACGTCCAGTTAAAGCTAGTATAAATTTGGTCCAAAA
TGTTGTGCAGACACAAGATTATATATAGTATTGCCCATCGTATCAGGTCAAACTAGATTT
AGTCCAAACATGTTGTGCGGATACAATACAAGATTATACTTTTTTTTTTAATTGGAGTAC
AAGATTATATATATAATGTTGCAATCACATCACTTACTTCAGAAGATCAGTGCCATATTG
TTTGTGCTGCTCGTGTGTGTGACCCTCAGAAGATCAGTGCCATATTGTTTGTGCTGCTCG
TGTGTGTGACCCTTGGCAGCTTCTGGCTTTCTATATACCATGACCTCAGTGCCTCCGCAA
ACCGAGGCACACGAAAGAGGGATTCGGTTGCTGTTGTTGGACAACCGTCCCGGATTTATC
ACTGTCAAAATCAAAACCAGGGTCAAACGCCGTAGACTGTAGAGAATATTAAAAGCAGCA
TACTAGGCAAACGACGGCTAAACATGACTGTTACTGCTTGGGATGGATCATTGCAATTGT
CTCAAGGGGAAAGAACAGTTCCTTGGCAGATGATATGATAAAATTATTACGCTGAATGAC
TATTCCTTTGACTGATCCCGCGGGCCGACAACCGTTGAGCCATCACCTCTTGAATAATAT
AAGTTCTAATAATCAATCAGCAAACAACGGCTGAACACTGAAGGAAAACGCAAAGGGTTA
CTTACTATTTGGAACGGATCACTGCGACAGTCTCCACAGAAAACGAAACATTCCTGGACA
GATGGTGATGAAATTTATGCCGAATGACTATTTCCCCGCTGCTGCGACTGGCTGATTGCC
TGATCATGCGGGCCAACGACCCCTAACCAGTAACCACATGTTTGGCGCCACGTCGCCTAC
AAGGCTACAAGATTAGTGTGAGGCTGCTCACGCGATTAGCACCCCTCGCTTAATTCTTGG
AAGCTTTTCCTTCCGTCCCAGACTCTCTAAACCTCTCTCCCTCTCTCTCTCTCTCTCTAA
ACCTGGAGCTAGGCGGTTTTGGCTTAGCCAGGCGGGCCTGCCTGGCGGGTCCTTCTCCTT
GGAGGCGCACAACCCCGCTTGGCTATCTCCGCGTGCCTTTGCATATATAGGAAGGAAGCT
CTCTCCTCTTGGCATCAGCAGCAGGGGCGCCAGATACTGCTGCTTGCCCGGCTTCTTCTC
CTCTCTGATCCAAGCCATCCTGTGGCTTCCCCAAGCTCACTTCTTCTGTAAGTTCTTCCA
TGCCTTCTCTCTCTCTCTCTTCAAGTTCCCTTTCTCTCTATGTTCTTCTGTGTTCTCTCC
ATGTCTCCTGCCTGCAATCTCTCTCTCTCTCTCTACACACACAGACACACCAAGCAAGAA
CTTGCCTTGTTCTCAACAACACGGTTAGCAGATAATGTTGTTTTCTGTCACTGGAACGAG
TCTCGCTCTCTGACTGCACCCAAGAAAACAACAGATCTTGAAAACGCAGAGTCTTCTTTC
GGAAAAAAGATATAGATAGAAAATACAGAGTCAGTGACAGCTCTCTTCATTTATTCTGAA
GAGAGAGAAAGAAACACAGGGCAAGAAAGTACACCGTCGAGTCGCACCCCTCATTGTCCA
ACTAGTTCTTCTTCTTCTTCTCCCTTTCTTGGCAGATAAGGAACTACCAGCTCCAGTTTT
TCTTTCTTATTCTTGGACTACACGGTCCAGATAGATAGTTTACTTCACCCTCTAGTTCGG
TCGGTGCTATCTACGCATTGATAAAATTCAGGGAAGAGGGTGTAGAAAACTACTGACAGA
ATTTGCTGCAAACTTTCATCTCTGATACGCAGCTTGGAGGATGGAGGGGACAAAGAAGCA
GGTTTTCACGATCCAGGTGGAGGATGGAAAGCCCGGGAAGGACGGCCGACCAGCGGTGGG
GCCGGTGTTCCGGAACATACTGGCCAAGGATGGGTTCCCGCCGCTTGATCCTGACATGAG
AACCTCATGGGATGTGTTCAGGTAAACGCCAGCAACAGCGACTCCATCCATCCATCCCTG
TCTTCTTTTTCTCCTACTGAAGTTTTCGTTAGACAGTAGCTTTCACTTTCAGTGCTGCAC
TTTGTTCTGGGTTTTTTCCCTGGGGTATGTTATACACAAAGACAAAGAGAACTAGTTGGT
AATAACTAATAAAGAAAATAATTCGACTTCGGCTCCATGTCAGACGAGTTCATCTCCTTG
TTTGTCACCTCCATGCATGTGATTTTTACTCAAGGACAAAAAAACAGTAGTACTCTGCAT
GTGGTTTTTCTTTGCCAACGACAGAAAAACACTGCTCTGCATGTGTGTGATTGTTCCGAG
ATGGTACTGGGGACAGCCACATTTCTGTTTTACCAAAACCAACTTTTGGATTCACATGTA
AGAGCAACACCAGCCTTTTGGCCCCCAGCGCACCCGGCGAATGCCTTTTTGGCGTCGCGC
CGGCGCTTTTTTCGCCCTAGGGGCGAGCGAGTTTCTAGCTGCGCCCCCAGGTTTCGGTCC
CCAGACGCTAACTTTTTCAAATTTGTCTTTCCCGCTGCCAAAAAGACGCCACGAGTTCGG
CGATCATCATGCCACAAGTCGGCGATCAGCATGCCATAGTTCGGCGATCAAACACACCCA
ATAGTTTAGCGATCAAAAGAAAGAGGCAGTAGGTATGAAATGAATCAAACGGTCGACTCG
GCATAGTGTGGCTCCTCTGCCGCGGGTCTGGTCGGGGTCGGGCTCGTAGTCGGCATGGTT
TCTGCGCTCGGGCTGGGCGTTGTTGTTGGTGTTGCCGTCGTCGCCGTTGTGGTCGCCGCC
GGCGCGGGCATCTAGTTTAAGATGGGGCCGCGCTCCACGAGGAACCACGCCTTCACCTGC
TCGTCCATCGTCGACGTGTCTGCCCCCATCAAGAACGCTAGGTCGGTGTTCCTCTTCTTC
GCGGTGACGTTGGGTTTGAAACCGCCATGCGCGTCGCCGTCGGAGTAGCCAGGAGAGGGT
GCGTACCCCCAGTGTGGCAGCGACGGCGAGATGTTGGCTGGCGACACGACGCTCCGTCGG
CTCCTCCATGAGGCCTGCGGGTTGCGGCCGGGCGGATTCATCATCCCCGCGCGAGACGCC
TCTTCCTG