morexGenes - Barley RNA-seq Database

Contig contig_275509

Source Contig contig_275509

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_275509 (5250 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_275509

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44840	2	1138 bp	MLOC_44840.1	Available	Available	LOC_Os01g14180.1, FRAME:-3, EVALUE:1e-127, 13101.m01562 protein expressed protein

CDS Structure of MLOC_44840

Contig Sequence (5250 bp)

>contig_275509 5250 assembly3_WGSMorex_rbca.fasta
TAAGCCAACTCATTATACTCATCTTTTCAGTATATGTANNNNNNNNNNNNNNNNNNNTTG
CGAAACGACGAGATGCGTTTTTATCCCTGTCGAGGCGCTCGCGCCAAAAAAATAAGGATA
TGACCGTAGCTTGGGCGTTACACGGATGAACACCAATTAAATCGCCAACTCGAGCTTTCC
ACTTAACGGCGCTGACATGACCCGTAACAGTAAAGTCGTTGATAGGAAGGCCTTTTATCA
TGGCCATGTCCTCTAGCGTCATCCTCATCTCCCCACGAGCAAGGTGGAAAGAGTGTGTCT
CGGGCCTCCAACGATCTGTAAGTGCGGTGAGCACCGCATGGTTCACCGGTGGTGGGGTCG
CTTGAATTGCAACATAGAGGGGAAAAGACCCAATCTAGCAATGTACGGCTCGTACCGCAT
GTCGTACGGAAAGTCATTCACACCATGACCCCTCATGCGCATAGCTACTACAGTCTGCAA
ACAATGTGAGCTTCATATCAGTACAAGAACACACATGAAAAACATGAATAATTGATAAGT
CTCTCTTCTTACCTTCCGATTCTCAATGGCACGGGCACGATGCTCTCTCTCTCACACATC
GGTTAACCCGTCATACCAAGGGCCATCATCATCCACCATCCTACCCAAAAATCACATCAT
CATCTTTAAATACATGAACAATATATGCAATATTTTATCATATGAAACATCTATCTAAAA
CATTCCTATTGACAAAATATACAAATACATATTATTTAGAGTACACAAACAAATCTCTTT
AACAACCAATTCATCACACAACCATCATATTTCATCATCTGTTTTTGTAAAAACAAAATA
TGACAACAATATGTCCATCTACATATTGAACAGAACAAAATATAATTGCATACATATTAA
ATAACACATCACCTACTACCTACAAATCATCTATATCATCTAACAACTACACAAAAATTC
CTAAAACTAAGAAATCATCTACTAATCTAACATCACCCAATCTTCAATAATGCTCTAAAA
ATAAGATGTTCTAATAAAAATAAATTGAAGGGATTGGGGAGAATACCTCAAGGATGCTTG
GGGGCTTAGATCCATAGATTTTGGTGGAGGATGGAGTAGATCAAGGGGAGGTTGGTGTGA
GGGGGGAGAGGGGCGGCAAAGGGGCTCGATCTGTTCGTCTGCATCGCCATAAAGAAGATG
GGAACGAGTGGGGCGGGCTCGCGCGCCAGATTCACTTACTAGGACCAGGAGCCATGGTCC
CTAGCATCTGACCCTTTGCCACGTCAGCGAATCAACGGGCCAGCCGGTCGTGCGAGCCCC
GTGCTAGACACGAGGACCCTCGCGTCTGGGTTGCAAAAGAGGTCAGATTCGAAACTTGTT
TAAATGTGAGGTCAATTCGGGAATTTATTCGCCCAAAAGGTCAAAACAAAAAAATTGTCC
GTCGATTGATGTGACTTCATCACGAGCGCGCACAGCTTGGCATCTTAGCGGGATGAGCTG
GGCTGCATTGCGCTCGCTCGCGGGCGAGGCTTAGTTGCAGGCCGCTCAGGTTAGTTGAAC
TAGCCCTTTATGTTTAGGAATTCTATTCCTTTCCCCTTTTTCCTTTTCTATATTTATTTT
CCTTTTGAATTTGCATTTTGTTTACAAATAAAACTCAATTCAAATATTTTGGAAAAAATC
ACATGGGAATAATCTCCTGTCAAAATATTAATTAAAATTTTGTAATCCTTATTTGGATTA
TTATAATGATTCAAATACCAAATTTGCTCCAAACATTTTGGATTAATTTCACAGAAAGCT
AGTTTAATAAGTGGGTCTTAGGAAATATACATTTCACCCCAACATATTAAATAATAAAAT
TCCATCCTATTTTAAGATACTATAATTACTTCCTAAACTTATTTAGGGTTCAAGCAATAC
CAAAATAAATTTAGGGTATCAAATAACATTTGGGATTTAGGTAAATTACTTGCTAAGCCA
AAACATAATGTACAAGGTCACACACATTTATAACTTGATTTTGGCTTTATAAATATTCCC
TGAAAATGACTCCAGAGTTCTGAATAATTCCAAAATGCTTTTGAGTCAGAAATAATAATC
AATTCAGTCAAAACTAACTATGTTCAGGCAATCACAAGCAAATAAGCAAAAAATAATAAT
TAACCCTAGTTTTATAATTCACATTCCAAGAATTGAAAATTCTGGGATGTGACACTAATA
AACTTGGACCCAGGGAGTAGCATTTTGGGGATCGGCATCAAAAGGAGGAGGAAAACTTCA
CTCACGTTCAAGCACTCGTTGGACCAACAAAGTATATTTTTCGATCCATCAAAAGCATAT
TTTTCGAACCATGGAGGAGCATGGGTTGACAAAGATAACAAGAGACATAACAAGGGCTCA
CTGTCTTACTGACACAGATAATCATTCTGTTCTGAGCCAAGACGGTAGATCAAGTTTTCA
AACATTGCGCCAAATTATAAAGGCCAGCACTTGGTAGCATCTGAACTTAAACAGTGACAA
GAAAAACAAGCAAAAAGTTTCATGCTGTTGCCGGTTTCGTTGAGTCAAGTGCTGTCGAAA
AGACGCCATAGCCACCTGATAACTTGATGTATTACTCCCTCTACCTGCGACAAACCAACA
GAAAATTACAAAGGAACTTTTAGTACGCCAGGCTGCATGAGTTGGTCTAAAGGGACTAAA
ATTTGGTCCATGGAAATGTATAACTCAATGGACGCCAGGCTGCATAAGATGTTTACACTG
GTTCTCATTCCTCAGTCTCCTCTTAGAGATGGAGTTGCTGCAACTCTTCATTCACGCCAT
CTTCAGTCTCCTTTGCACTTGCAGAACCTTCAAAAGACAGAGTTATGTTAGGCAAGGTAT
ACATACTTTTATGGATTTCTGACATTATACAAAGTAGTTCGTATCTCGCTGTCTCATTAT
GCTTATTCGTCACTATATACGTTTGTCTCAACAAAAGAAACTGGACCAAATATTTAAAAA
TCTAGTATGCACTATATTGTGGGACAGGGAGGTACTAAAAACAATTCAAACAGGGACAGT
AGCTCCCCTGACAAAATTGAGTAAGAAATTTCATTTGCATATATGTAGTGAAGCACAACA
AAGTCCTTCGAAACATAAATGCAGTACTTTTTCCCGGGAAGAAATGCAGTACTGATATCT
AACAGTTGATTTGCTATATATGTATACTTTCTCAGCCCATTGCAAGTCTTGAAAATAAAC
TAGCACAGTGTCGTTACAATGCCTAGTACTACATACAAGTAACAGAGAAGGATGCTATGT
TCAAAAATCAAACACTTCCGTATGGGATCGTGGAGACAATTTCTATCAGAAATGTACATG
GGCAAGCATATGAAACTATCCAGCGCCTATGATAGTGAATCCCAAAATGTATATTAAAGT
ATTGCACATACGCTAGGGAAAAATTGCCAGAATTTTTAGTTAGCATTAGTCCCGCTGGCA
TTCACTATCCGGTACGTACAGGCATACTCAACATATTAAACAAAAACAATCTGATATTTA
TATAGCACACAGTGGTTTTCGTCAAATAAGTGTCACAAATTTTGACCAGTTTATAGAGAA
ATTATCTATATCCATATTCAATAATACCAAATATACACCATATGAAATATATCTCGTGAT
GAATCTAATGGCATTGATTTAGTTTTTAAAATGTTCATAACTTTTTTGGAAAACACTTCA
AAGTTTGCATCGATTGACATTAAATAATCTAATATGCACTGTATTATGGGACGGAAAGAG
TACTAATAATAAAGAGGGAAAGATGATGGATTTGAGGAAGCCACACTCTTAATGATGGAA
TCCAGTGACAATTCAAACAGAGAGAACAGTAGCTCCGGTAACAAAATTCAGTAAGAAATT
TGCATATATATAGTGAAGCGCAGCAGAGTCCTTGGAAACATAAATGTAGTAATTTTGTCC
ACGAAGAAATGCAGTATTGAACCTATCCAGTGCCGACGACAGTGAAGCCAAAAATGCATA
AATATTGAAGTATTGAACATACGCTAGGAATTTTTAGTTAGTATCAGCCCTGCTTCAGTA
AGTGATAACTGGTAAGTCATACTCCTACATCTCATCCACACAAGATCATTTATAAGTCGA
AACGGAAGTGCTTTACTTTGTAAGCCCCAATTCTAAGAAGCCCCTTACAGTGATCAAACA
TAAGCCCTCCCTGTTCCCTGCAGCATTACTAGCTATTAACAAGCTAAGCATAGCCTGAAA
GTTGAACATTTGCATATGCTCTCTCCCACAACTGACATGCTAGATAAAGGACATCACATC
ATATACAAGATAACAGATCAGATCGTCTCTCCAATGCTACACAGAAAATTATCAATTCCA
ATCACTAGACAAACCCCCTTCTTAAAGAAAAGGTAGCGCTGTGCCGGTTGCTCAACAAAA
AGAATCACTAGACAAGTAACAGGAATCTAGAATCAAAGAACATAGACGGTAGAATTACCT
GAGCAGAGAGCCCGTGGCAGCTGCCAAGCGTGAATGAAGCGGGTGGCGACGTGCTCGCTA
GGCGGCGCAACCAGCTCGTAGACCTCACACTCCACAACCTTGCGAGCACGCACGTCGACA
CCGAGCAGATGCTCGTCGAGGAAGAAGTAGACCACGTCAGGGTTGGTGGGGTGGATGAGC
CCAAGCACCGGGATCTTCCTTGGCAGACCAGTCGCCTTGTAGCTCGCGTCGTCCCAGATC
TCCGTGAAGGCGGCCTCGTACTCGAGCGTCCACTCCGTGGTGTCCGGATCGGCGAGCGTC
CAGACGCTGATCTGTGCAGAGCCGCGGCTGTCACGGTTCCGGTACATGTCCAAAAACCGC
AGCTTGCCGCCGCTGACACGCACGCAGCGGTACTTGTCGAGGAGTCCCCAGCCCTCCCTG
CACTTGAGCACCTTGCCCGGCGGTAGCGGGACGGCCCTGAGCACCGGCGCGTCCTGGAAG
GGGTCGCAGGTGAGGAGGCACCAGGAGAGGTCGACCCACCAGAGCCTCCCGTAGTAGGAG
ACGACGCCGTTGGGGGCCAGCATCCGGAAAGGCAGCGGGATGTGGATGCCCTTGCTGACC
CACTCTCCGACGTCGGACGAGAAGCGCAGGAGCGTGCCCTCCTGACGGCCGAGGATGGGC
TGGAGCTCGACGACCATGTAGTGGCCGCCACCCCCCGGGGAGGAGATGAGGCCGAGGTGG
CCCAGGTGCATGATGAGCTCGGGCTTGGGG