morexGenes - Barley RNA-seq Database

Contig contig_275475

Source Contig contig_275475

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_275475 (5213 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_275475

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44826	1	255 bp	MLOC_44826.1	Available	Available	None
MLOC_44827	4	2214 bp	None	Available	Available	None
MLOC_44825	2	2186 bp	None	Available	Available	None

CDS Structure of MLOC_44826

CDS Structure of MLOC_44827

CDS Structure of MLOC_44825

Contig Sequence (5213 bp)

>contig_275475 5213 assembly3_WGSMorex_rbca.fasta
AGAGCAGACAGCCAAACAAGTTACTATTCTAGTTATTAACAAGCACGTCAACAGCGAGCT
AGCTTAATGAATGTGTCAAACAAGAAACGTCGGAAGGACCTGACCACTCCTCTCCTCTCT
TGTGTGAAGGAAGAAAATTTCAGTTTTCTTGTCACAAATTTGATGGCTATTAAATAGCCA
ACTTTATCTACGCCATTATATATACTTGCTCCAGAGATCAGATCAGAAATGGTATAAATT
AAGAGAGCACCAGATTTCAGAATTGAACAACATAGCAAGTTTACGTGTTCAGAACAACAT
AGCAAGTTTACGCGCAAACTAAAGAATGAAAGCCTTTGGGAAGAAGATACATGTTGCGGT
CATGACTAGTTCTGCTATCAAGGGGAAAAATTAGACCTAGTAAAGTAATGCACTTGTCAC
CTTGATGCCGACAGCGGTGAAGGACTTCTCGTAGCAGAAAAAGGTGCTGGAGTGGTGGGC
ATACTGCTCTGCTCTGCTCCGAGAGGGGCCATCCGTTTCTCTGCCACACCACAGGAAGGT
GAGGTGATTAATCGATCAAAATATCATAAATTACGGACTCAACCAAGAGGAGAGATTTTT
ATAAATCAAAATTGTGTGATTTTACTAGTAAATAAACGAAACTGAGGATTTTTTTTTGCA
TCACATATGAATCCATATCCATCATACAGTGGTACTACTAGTGTATATATACTATCAAAA
AAATAGCAGCATGTAATCCTTAAAGCTACAAGCAACACATAAATCAACTTGAGTAGATAC
TTCGTATACCCAGTAGCAAATTAATAGGTACATTTGAAAGCAGAAACAATCTGTCCAAAT
CTGATTCTTGAAAGAAGAAAAGGCAATCTATCGGAAAGAAAAACAATAATCATAGGCTAG
AGAGCAGCAGCACAATTCATTCATGGAACAGAACATTTCCAAAAAAGAAGCATCAGCAGG
TAATCCTTATAACTACTATGGTTACAACTCAGCCACCACCGGACTACTATGGTTTCCCTG
AGAAGTAACAGCACATACACGCACACAGATTAGAAAACAAAGAAACATAGCTGATCTGAA
ACGGTTTATAAAGGGAAACAAAATAACAAGGAAACAGACCTTGTAACATTCCTTCCCTTG
CCACGCCCTTTTTGCTTCCTGGGAGGTCACCTCAAACCAAATAATCTCTCTCATCTGCCA
AAAAATATACGCACGTGTCAGTCCACTACGGCCGGGAGATGCACTAACAAACATAGAGAC
TATTGTGTTGAAGAAGGAAGTTTACATGTTCTGAACAAGCAGCCAGACTAATCTACAATC
TCTTATGACCACTCAACTCTTGTACGTGCAGACTAAAGAAAGAAAGCCTTTGGTAAGAAG
ATACATGCTAGACTCATGACTAGTTCTGCTATCCAGGGAAAAATTAAAACCCAGCGAAAT
ACTGCACTCGTCACCTTGATGCCGACAGCAGTGACACACTCGTCATAGCACAAAAAGGTA
CCGGAGCGGTGGGCATACTGCTCCGCTCCGAGAGGGACATCCCCTGCTCTGCCACACCAC
AGGGAAGGTGAGATTTTGATTAATCAATAATGTGTGCTTTTACTAGTAAGTAAATGGAAC
TAAGGAAAAAATTTGCATCACAGCACAGCACGTATGGATCCATCCATCATAAAGTAGCAA
TACTACTAGTGTATGCATACTATCAAAGAGAAAGAAAATTTAGGAACGTATACAATCATC
TTGCGAAATCTGTGACCATACTCAGATATATTTATAACACAAGACTGAATCTTTTGTAGT
CAGTGACTATATTATGACAGCCAACCACTAATGTGACCTTGTTTCCCTCGAAAAATAAGA
ATTTACCACACCAAGTTATTTTTGAAAGAAACGGGGACAGCTTCCACGGTTCATCTAAAG
CTAAAAGTACACAGTGATTAATAGCTTCAACTTATGCAAAGCTCGGACATTTAGCCAAGT
AACTACAGAATAGGAACTAGCCACAAGCTGAGTTAACTAGTACGTGACCATCAATTCAGA
TACAAACTGAAATCCCATTCATTCTGTAGCAACACAACAACCATAATTAGCTACTAGTAC
ATGACCATCAGGAACCACACACACAAATCATGCAGCAGGACCAATTACGATATGAATTAT
ATTGGAACCAAAGTTCAGCTAGCCTCATACAGGACCTCAATCCATCCAAAATCTGATTCT
CGAAATAACGAAAGGCAATCTGTCCAATAAATATACAGTAATCACATGCTAGAAAGCATC
AGCATCATTCATTCAGGAAACATTCCAATTTCCAAAAAGTAGAACCAGGTAATCCTTAAA
GCTAAGGTCAGTAGCAGCACATAAATCAACTCCATAGATACTTCATATACCCAGTAGCGA
GTTAATAGGTACAAGGTACTCCCTCTGTAATGAAATATAAGAGCTTTTAGATCACTAAAG
CAGTGATCTCGACGTTCTTATATTTCTTTAGGGAGGGAGTACATTTGACAGCACAAACAA
TCTGTCCAAATCTGATTCTCAAAAGAAGGAAAAACTATATGTCCAAAAGAAGAAATAGCA
ATCACAGGCTAGAGAGCAGCAACTCAATTTATTCATGGAACATAACATTTCTTAAAAAGA
AGCATCAACAGGTAGTCCTTATAACTACTATGGTTACAACTCAGCCACCACCGGACTACT
ATGGTTTCCCTGAGAAGTAACAGCACATACACGCACACAGATTAGAAACAAAGAAACATA
GCTGATCTGAAACAGTTTATAAAAAGAAACAAAAAAACAAGGAAAGAGACCTTGTGACAT
TGCTTCCCTTGCCAAAAATAGTCACCTCAAACCAAATGGTCTCTCTCATCTGCTAAAAAA
TATAGTCACGTATCAGCATCATTCATTCTGCTAAAAAATATATTGCAGAGGACATATGAG
TTCCATCCCTAATCATGGACAACAAAATCTTCCATGTGCACGAAATGATTAATGCACAAC
CTTTCGCCATATAAAGCTAACACATTTTCTGCATCCAGTTTAGCCTACCAAGAACGGGAG
CACTAACCAGGGGAATAAATTTAATTTGGGAGTGGATTTTAGTAGCTGAAGGTTAGCAGT
TATGTTAACCACTTAGACCACTAACTAAATTAGGGACCAATACAAAAGCATCACTTCGAG
GAGTAGAATCCTAACTACAAGAGCATCAAACAGCAGCAGGTCTATAGGAACCACACCATT
TACACACTTAGACCATACCATGTCCAGGAAGGAAACAAAACATGGTACAAGAATATTATA
ACCAGAAGTGTAGCTTCAAGTACGTTTGGGCAGTTTTTTTTGGCCCAGAAATCTTATCAA
ATGTACCAACCAATCATATCTTAATACCAAAAAAAAGCATAAGTGTTGCGGCAAGTAGTG
CAGCAGGACTATTCAGTTCGACATGATTTTAGTAGCTGAAACTTAGAAGTTTAGTTAACC
ACTTAGAGCACTAACTGAAGTAGGGATCATATCAATAACGGATCATCAATTGAGGAGTAG
AATCCTAATTAACCACAAGACCATCTGAAAGCAACAAACATGTCTATATATAGCTACCCC
CAGATCATTTACTTGACAAGCAAGCAGCACATAATAAACCGTAACCACATGTCCAGCAAG
GAAATAGAACACGGGACAACAACAATTCTTGCACATAGGAGGTGAACAACCCTAGCATGA
CATAACATGGACTAGGTAGATATCCACGGCTCAGAGCAACCGGAGGCGAAGAATGGAGCA
AGGAGAGGAGCTCAACACCGGGGTTCTGTAGCCGATGTCGTCATTCACTGTTGTCACACG
GCATAGGAGGATACCTCGGGAAGCGCCCGTTCCATCGCAAACTCTGGTGCATCATAGCAA
TAGTCAGTTGGTCACTCCGGCAGGCAGTCGTGAGTAACAAACCAACTGAGGATTATTTTT
GCACCAGGGGCAGAGCATAACACGTATTGATCCATCAATCATTCAGTGGCAGTACTACTA
TCTACGTACTAGTCTGCTGGTGTAATAGAAGAACAAGTGTGGGCACAAAAAATGGATCCA
TCCATCATACAGTAATGGTAGCGATCATTCATTAGTTTGGCACCAAGAATTTGCAGCATT
TTGTGACTAAAGAAGATGATTTTACAGTGAGCAGGTAGATTAACCAAAGTGTGATGGGGA
TGGGGCGCTATCTGCTGCTGAACAGGGGAGGGGAGGATGCAGAACCACACGTCTTGCAAC
TCCGCGCCTCACAAATTAAATCGAGCCGAAACGAAAGAACAACATCACCAGCCTACCAAA
TGAAATCAAAACGGACGAACCAACAAAGGGCGGAGAGGGAGAGAGAGAGATGGGGCCAAG
AGAGCATGCCGTTGTCGGACGGCGTGTCGCTATGGGGGCGGATGCGGGCGGCGCCTGACC
TCGTCGAGAAGGTGCACAACACCCAGGGCAGAGCATTAGGAGAGGTAGAGAGATACCTCC
ACTTCCATGGCGTCGGCAGGCACTAGGGTTGGAGAACCGGGACAGCAGAAGAAGCAAATG
GAGCCATGGTCTCCTAGGTGGTGCACCTGCACGCACAAGGGGAAGAGGGAGGAAACCGCG
TCAGGAAGGGAAGGAGGGAGGGAGGGGAGCGGCCAAACAGCAGACATGGCGGCGGGTGCC
AGATGAGTGGTAGTGGAGATGAAGACTGCCTGAGGTGGATCCGGCGGTAGGCGCAGAGGA
GATCGACGACGACGGCCAAAGGAGGGCGGATCTGGGCGTGCCATGGCCGCCGGCTCACCT
GCTGGTTCGCGATCGCGGTGGAACTCCCTCCGTCCTGCCTCTTCCTGCTGGTTCGAAGTC
GCGATAGGAGCAGAGAGATACTTTTTTTTTTTTGCAAAAGCGCACCGCCTACAAATACGC
CATTAGTAACCCTGGTTACTAATGGCGCATCAGCTAGTGGTGCGCCATTAATAGTTTTGC
AAAAAGAAAAATTTATAGTAGTGGTGCACTGGGTGAGTGGTGCGCCATTACTATTTAAAC
TAGTAATGGCGCACTTTGCCCCAGTGCGCCATTAGGACTTTTGGAAAAAAAGTTTGTTAG
TAGTGGCATACCGTGTGTGGTGCGTCATTAGTGTCCATCACGCTAATGGCGCACCTACAC
ATGATGCACCACTGCTATATAGTAGTGGCGCACCACTTGTCTGGTGCGCCATT