Contig Data
morexGenes
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Map Locations of contig_275396 (7028 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_275396

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44797 1 467 bp MLOC_44797.1 Available Available None
MLOC_44798 1 443 bp None Available Available None
MLOC_44795 5 1880 bp MLOC_44795.1 Available Available LOC_Os12g19381.1, FRAME:+3, EVALUE:2e-104, 13112.m02058 protein ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
MLOC_44796 1 1304 bp None Available Available None





CDS Structure of MLOC_44797






CDS Structure of MLOC_44798






CDS Structure of MLOC_44795






CDS Structure of MLOC_44796






Contig Sequence (7028 bp)

>contig_275396 7028 assembly3_WGSMorex_rbca.fasta
ATTACTAAAACAATAGTTGCAGGTACCGGTAAAGCGATACTTCAACGTGAGCGCGATGAT
TGTTCTATTTCGAGTTTCTTCTTCTTCTTCATCGATCATAGGATGGGTTTCAGGCCAGTA
GCTTGGGATAGAAAGGATGGACGTCGTTNNNTTATCGTTTGTTTTCATCCGTAGACATGC
CCTGCTCTTCTACATGATGATTGGATGTATTGTTGTATTGAGATTCTCATGATGTAGCTT
GTGGCGATTGTAAGCCAATTCCATATACTCGTCCCTTCTGTACATGTACTTGTAACGATA
TCCATTCTTGTAAAACGACGAGATGAGATTCTACCCCCGTCGAGGCCTTCGTACCAAAAA
AAACAAGGATAGGATCGCATATTGGGCATTATACAAGATGTGCTTGGGGCCATTGAGGAG
ATGCTCCAACACTTGATGGAAACAAGGATACCAAATGCAAAAATGTGTCTCTTGGCTATG
CTAGACTCATTATCACATGAGCACTATGTGGAGATAGTAATCACCTTGTGGGCAGTATGG
TCCACGAGATGAAAGGCAAGAACAAGAATTCCAATCACCTTGATCAACCCGCTTGTTAAT
TACGAAGTTCTTTTCACAGCTAGATACCATCTCTTCAAAAAAAAGACAATAGAGTAGGTG
CGCGAGTCCAAGTTTTGTTAGGAACCTTGGATTAGACCCCCATCTGGTTCTCTAAAAACA
GCGATCGAGTTTCAACAGTGGTAGTTTGTCGCTACGAACATGGTAACTAAGTGAGATCTT
AATCCATTACTTTCCCGGGAATCACTAGTGCACCAATTCAAAAAACACTTGTTGTCGCGA
GGTGATGGTGCTCACACATGATCTCCAAGCATCACAATTTATTATTTCATCTCATTGTGC
CACTGTGATAAGGACCTCAAAATGATTGAAGGAGAAAGATATGTTGCTATTATAAACGAG
GTCAAGGCTAGAGCAACATAATTTGTTGAAAGTACATGAAAGTTAGACAAGAATAATGAA
GCATATAGTTTAGCCAAATTTTTTTACTTTCTCTAAACTTAGGTAGACATGTTTGGTTTC
TTTCAAGCAAATGATCATGTAACGATTGCTATGAATTATTTGAATAAGGAGTCATTACAT
CCCTAAAAAATAATATTATAGATAAAAATATATTTAGAAATTCTCATTGGTGTGTGTGTA
TGCCTTGTATACGAGCATCCTTATTTACTGACATAAAAAACAAATAATAATATCCATACG
TGTGGTATTTCAATACTTGGTCCATACGCATTTATTATCGTTGGTTCTCGATTGCACGAA
TCTTGCAGGGGTCTATTAGAATTTCACACGTAGGCATATTGTGGTGTGTAAGTGGTTAGA
GCGCTTTTCCAAACGGCCTTGCACGCGTGATTGATAGCTTCGTCGTGCAGGTGAATCGGT
ACTCGCTTACACAGACACCATCTAGTCCACGTTGTGCGGGTGAACTACTCTTCACCCATA
CGATGCTCGTATTGTGATAGATGACAACTACAGTTGTGCATATGTGGCAACTGGCTAATC
ACATATTGCAAATATGATTGACCATACATGACAATTATGGTTGAACTACACGTGATAGCT
AGTTAATCACACATGACAACCATGGTTGATCATACATGACAATTATAATTTGGCCACACG
TGGTAACTATCGTTAATTAAGCATGACAACTATAATTAATTAAAACAGAGAAGTTGTGAT
GTTTTACAACTAAAGTTACCATCCTCAAGTAACTAAAGTTGTCACCAAGAAATGTCAAGG
CGAAATTGCTCCGTGGCATACAAAAGGGATGGGAATGAGTATTCCCTCATTTCCTAAATA
TAAGTATTTTAGTGATTTCATTAAGTGACTACTTATAAAGTAAAATGAGTAAATATACAT
TTTAAAATATATCTATATACATTCATATGTAGTCTTCTAGAAAAATCTCTAAAAAGACTT
ATATTAAAGAGCGGAGGGAGTAATTGTTAGACGTGTGACATGAAGTAGCTGCGTCCGATT
GTGTCAATCGTGTGGGATGTCTCCTAAGTATACCACATAGGGTCATATGGTTATTGTCCA
TTATATCAGATGTGTGGTGAATATCGCGAAAAAAAGTACATTCTCATTTGCAAAGGATCA
GCCACGCATGGACAGGGTAGAACGTAGGTCCACGGGATAAGGCACGTTGCCACATGGCGC
TTGATCCGATCTACAGGATGGCACCGTAGCCGGGGATAATCTCCGAGGCTAACAGCAGCC
ACTCCTCCCAGATCTTGTGCAGATAATGGAATGGGTGGGAGCCTACGGTTTATACAAGCC
ATCGTCGCCGACCCACCGCACAGTCTCAAGTAAAGCCTGCCTCTCCTATTAGCTATCAAC
GATGGCTCCCACTGTCATGTCGTCGGCAGCCACCGCCGTAGCACCCTTCCAGGGACTCAA
GTCCACAGCTGGTCTCCCAGTCAGCCGCCTCTCCGGCAACGCGGCTGGCCTCGGCAGCGT
CAGCAACGGCGGAAGAATCCGGTGCATGCAGGTATGGTCACTAGACCGAAGACAAAAGAT
TTTACTTCCCAGCCCATTCCATCGAGCTGACTAACGGAGGACAAACTAAATTCTGTGAAC
AATTCAGGTCTGGCCGATTGAAGGCATCAAGAAGTTCGAGACTTTGTCTTACTTGCCACC
GCTCTCCACGGAGGCACTCCTGAAGCAGGTCGACTACCTGATCCGCTCCAAGTGGGTGCC
TTGTCTCGAGTTCAGCAAGGTTGGATTCATCTTCCGTGAGCACAATGCCTCTCCAGGGTA
TTACGATGGCCGATACTGGACAATGTGGAAGCTACCTATGTTTGGGTGCACCGACGCCAC
ACAGGTGTTAAACGAAGTGGAGGAGGTCAAGAAGGAGTACCCTGACGCCTATGTCCGCAT
CATCGGATTCGACAACATGCGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACC
AGGCTGCGAGGAGTCTGGCAAGGCCTAAACAAGCTAACTCCCTTTTATCATACAACATGG
TTTCGTGCCAGGTTCATTTTATTTCCCTTTTTACTTTTGTTCTGCTTGTGTATGTGTTCT
CTCCCTGCAACTCGAGTTAACATTGTATGAGTACTACAATCATAAGAGTACTACAACTAC
GTTTGGGTGAGGTGCATGTAAACTACGGCTATGCATAAAGAGAAATATACATGATAAGAA
TTCCAGTGATATCTATGCCACCGTGTTGACGATGTTGTCTTTTTTTTTATGACAGTACAT
ACTCAAACGCTCGTAGACGCGTATACACTCACTCCTATGAACACACATGCACATCTTATC
TTTATGAGTACCTTCTAGAGACCGAGCCGACATATCATCTTAAAACTTACAAATTCACTG
TAGACACCTTTTCATCAACGGAAACATCTCTTGCGAACATCAAAATTTAAACTTTGGAAG
GTTGGGATACCAAAGTCCCTCTAACCATCCAACCACATGTAAATTATCTATTATGTCAAT
TCTCAGTATATAACTAAGAAGAAATTTGAAAATGGGCACGAAATGTTTATAAATGAATTT
TCTCATTATTCGTTATTTATGGGTCTTTTCGTTGCATGCACTTACAACAAGAAACAACCA
CCGGCGTTTGGTGCAGCACTTGCATTTTGGTGCTTTCTTCTTCCATTCCTTGGTCTTTGG
TTCCGTCATATTCCAAATAACTTATTTAATTACAGCGTATTAACCGCTAATGCAACATTT
TCTTATCAAATCTCAGGGACATGTTTTAACCATGAGGGTCGTATTTTATCATGGTGTTGG
ATCCCAAGTTTTTATGGATTCTTTTTTCGTTACCGGGGTCGACCCCAAAGCCGTAATCTC
TGGTTTGAATATTGTTATATTTCTCACCGAGTAACAATGGTATAAAAGAGACGATATTTA
TGAAAAAAAATCTAAGACATTGTATGAGTCGTCTATTATTCACATGTATTTTAGTCTTTA
TTTCAATCCTCCTATATTTATAGGATTTGTAATGGTAAATATAAAGATAACATTAAAAAA
TAATTGATTGGATCACATATTTTATTGCTTCTCTAGATAGTACTAGCAAATAGTGCGCGG
CGGCACGCGGCGCCACATGGATTGATTAACTATTTAGTTTTGTTTTTTGTGTAATATTTG
ATAAGTCGTTTAAAGAATTGATTCATGGTAAAATAGTTCAAGATTCCATTGGTTTGTTTG
GGGTTTGTTGTTTTTGCTTAGTTACTGTGGCATCAGGATCCTGTAGGTGTCAATGATGGA
TGATTTGACACTGCAAAAACAGTAAACTCAAGTGATTGTGATCCAAATAATTCAGAAAAA
AAAGCAGCACGAATTGAAAATTTCCCTCGGCCATTGTGTCAACCACCGTCGTCACCGGCT
CACTGTCGCTGATTTCGAGGTTACCTCCTACCGGCTTGCCACCTCTTGCAATCTAACCTT
CGGCAAGTAAACTAGTGAAGAAATAGAAATTTTTATGCTACTCCGCCACAAAACGCAGGT
CTATCATGAAAAAAGAAATCACGGGAAAAATCTAGCGTGCTTGAGAAGCCATAACTGAAC
CCAAAGGAGCTTACCCAGAGGTGGACCTTGGCTAGTAGGTGATGGGGAAATGAAGGACCG
ACATATTATTGTGGTGGTGGTACTTGCAGTGATGCGTCCGATGGTGAGGCATGGTGGTGC
TCCTCAGGGAAACATTTGGGTTGAGGAACACCGTGTCGCCTCGGGAGAAGGAAATCCAAG
CCGCCACTACAGCCCACCGAAGCAAGTTCCTCCTCAATCAGCCATGGCCTATGTGTGCAC
CTCCCTACTCGATGGTTGATGACCCGACGAAGAGGAGATGAAGGGAGGGCGTCCTAGGAA
GACGACGAAGGAGCCGCATCCGATCCTGGCGGCGGCGTCCGCCTCATCAGCCCTCAAGCC
TAAAAACACACAACATCACCAACACAATCAAAAAGACTGCAAAAATCAACAATCAAACCA
TTCCAATGAAGGTCCAAAAAGAACAATACTCACCAGGAATAGAACCACCATCGACAGCCA
ACCCCAGCAACCCCCATCAGGATCACCAACAAAAGAAGAGGAGCCCAAGGACGTCGAATG
AACACGCTGAGAAGCATGCGCAACAGCAGAAACCATAATAGAGACTAAACAAACATGAAG
TACACAGGAGAGAAGGAGCAAAGAGCTACTTATAGGCAGGAAAAAGGAGAGGGAAAAAAT
GAAACCCACAAAAGAAACCCAGAACACAACGTGTACATCGATGACATAAAGAGGAAACTA
CTCCCTCCGTTTCATAATATAAGCCTTTTTAGATATTTCACTAGAGAATTACATACGGAT
ATATATATAGACATATTTGAAAATATAGATTCACTCATTTTATTCTATATGTAGTCTCTT
AAAAAATCTTCTAAAAGACTTATATTTAAGAGCGGAGGCAGTATACAACAGGAAACATGG
CCACATGCATGCATGAACCATGCAGCGGTGCACAAGACAAAACCAGCCCATACACATCTA
GAACATGCACGTGCAATCAACCTGATTTTTGCGCATGAGACAAAACCAGCCCGTACACGT
ACAGTCAAGCTAATTCTTTTTCTAAAGAGGAACCTTCTAGGAGAGCCAATCACACCCATC
TAACAATAAACAAAAGAACACAAACACGCTGCACAGCCTAATTTTTATGAAAGCATATGC
ACTATAGGCTGCCCACCCATCACATCAGTACTCCGAGACAACTTTTACTATTAAGTGGTC
AAAGCGGTGAGATGAAACCCAGCAAATGGAGGAAGAGAAACATACTAGGCGCACGTGTCA
TTTTCTTAGAAGCGTTAAAAAAAGTCTAAAAAACCCAGAAAAAAGAATCCTTACGGGCTT
AGTAGTCTTAGTATCGAATATATAAAAACATTGTCTTATCATCTACTCCCTCCTTTTTTC
AAATATAAGTTTTTTCCGAGATTTCACTATGAACTGCAAACAGAGTAAAATAATTGAATC
TACATTCTAAAGTATGACAATATACATTCGTATATAGTTTATAATGTAATCTCTTAAAAG
ACATATATTTAGGAATGGAGAGAGTAAAACAAATGCCCTAAAGATCTGGTTACACATGAA
TTGAGGTGGCTACTACCAATAGGGCCTATTCACGGACAGCTTCGGGTCCGAGTCCGTGCA
TGGAGCGCGTGGAGCAGTACCAACATAGAGTAGCATGTGGGGTTGTTTTTTAGTAGCACT
AGTAAGCATGCACGTGCGACACACGTCTTCATTATGCAGGTATAAATTTTTGAATTCATA
CTCTAAGTTGACCTTTTCTCTATAAGAAAAAAGAGAATTGCAAACCCATCAATTATATTT
TATGGATGCCATGTAAATTTCAAACAACCCATGAAAAAAAATCATAATTGTATACAAAAA
TGCCAGAAAACAACAGAAATCACCTGGATGAACAACTTGTCCACTGTATGTTCATAGCCT
ATTCAGTATATTGCATAGTAAAAGTGGAATCAAATATCAGAATGTTTATTTTCTTGGGTG
AAATTCAAAGGAACATAGAAACATGTCCATGTGAACGTGGTGTCAATGCAAAGTTTGAAG
AAGATACCCAAAAAACAGCGATCCCGGAAAAACTGTAGTTTCCTTCTTGGATTTGGTGTA
ATGCCCAAGATGCAATCTTATCCTTATTTTGGCTCGAGGGCCACGACACGGAAAGAAGGG
CATCTCGTTGTTTTGCAAGAATGGATATCGTTACAAGTACAAGTACAGAAAAGATGAGTA
AACGGAATTGGATTACACTCGCCACAAGCTACAACATGAATAACACAATAGAATAATGTA
TTCAATCACAATGTAGAAGAGTAGGGTCCAACAACAGAGGAAAAGAAACAATAAAAGAAA
GACGTCCATCCTTGCTATCCCGAGCTGCCGGCCTGGAACTCGTCCTAGATCGAGGAAGAA
GAAGAAGA