morexGenes - Barley RNA-seq Database

Contig contig_275350
Source Contig contig_275350
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_275350 (7284 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_275350

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44779	2	4563 bp	MLOC_44779.2	Available	Available	LOC_Os07g25680.1, FRAME:+3, EVALUE:0.0, 13107.m02540 protein protein kinase domain containing protein, expressed
MLOC_44780	1	312 bp	MLOC_44780.1	Available	Available	None
CDS Structure of MLOC_44779

CDS Structure of MLOC_44780

Contig Sequence (7284 bp)

>contig_275350 7284 assembly3_WGSMorex_rbca.fasta
GGTGGTCTCATCGGAGCTGAGCATGGCCACTTGCCCGAAAATGGCCTGATTGGCCATGGC
GTGCTTGATCCATCGCTGCATCCGCGAGCGTCCGGAGCGCTTGCGGTGAACAGCAGCGGA
GCGCGGGGGATGCCGGGTGATATGGCACCGACGGCTGTCGAATGAGGACTCCACAACTGA
ATGAATGCGTGGTTGGGTGGTTAGAGAAACAACGTCATCCGTAGGCCAAGGGGGGTTTAA
GTCTTTGGTAAATGGTAACATGATATGTGGGTTTAGTGTGTTGGAGGTGTTGGACATGAA
TGAATAAGGTGTATGTTTATAGGGGTGCGTGTATGTGTATGTATACGAGGGGCTTGCATA
CATAGTGTATGTGTATGTATACGAGTAGGCAAGGGTTTGGGTTTGGTGATGCACTTTACG
GGTCAACTACTGCACTGCTTGGATGGCTTGAAGATTTAGCAATTATGAAGATGTTATAAT
ATAATCGATAGGGATTTGCATAAAAAATGGAGAGAAAAGAAAAGAAAAGATGCCCTCTGC
TCCCTCTCCCTCTCTGGTCTTCCCCTCTCCTCTCCCTCTCCGGTCTCCCCCCTCCTCTCC
TCTCCTCTCGAGTCAGTGAGTGAGTCATCCCCTTTCTTTCTCCCGTCTGCATCCAGTTTC
AAATCCGCTCCTCCTCTCCGACCACCCGGCCTCGACCTCGACCACCAGTTCCTCCCCTCG
TCGCCTCCCGCCGCTCCTCTGCTCGACCGGACCGGCGACTTGGCGGCGACCCGACGGCGG
GGGAGCGGAGATCCCATCAGGACCTTCCTTCCACGGTAAGCCAACCCTAGCTTTGCTTCC
TTGGATGGATAATACGGTGCGTACTAGCGGAGCGGATGCATCCCATCCCATGTTTATCCT
ATCCACCTACCTTTACCTTACCTTACCTTACCTAGGGTTTACTTACTGTACTCTACTCTT
TTCAGCCTATTTGTTATCCATGTATGTATTTTCGACTCAATTGCCATGCTAATTTATCCA
TGTATGTACAAACCACGCCCGGATTCATTCATTCATTCTTGTTTAATCAATCCCCTTCCA
CCACTAATTTCGGGGGCAACCGCTGCTTACTTCACTTTCACTCCAATCCATTCCATTCCA
TTCCCGCTGCTAGACTTGCTTCTTTTTCCAGACACACCCGCTCAACCCTTTTCTTTTTTA
ACCGCTTGTATGCTCTGTTTGCATCTACTGTTTCACCTCAACAACCCATCAACTCTACAA
CATTATCTATCTATCTAGTGTATATGTAGCTTCCATACTTCACCTTTTCAATTGGACAAA
CTTGTTACTTACTTACTTACTTGTCCCTGCCTTACTCTCACTGCTCCCTAGCTCTTTCAT
GTATGCATGCTTTCTATGTTAATGGAAATCATGCATGTATCTAGTGTAGGCCTGTCTAGT
TTCACCTCTTCCTTGCTAATACTGAATAATGATCTTGTTCATTCCATGGCTGCATCTGAC
ATACATTATTTTTGACTTTTTATAACTCCAGGTCAGGCTCACGTTTCCCCTCCTTCCTGC
CCACCAGCTCTTGGGCGCACTTCTCGCAAACACAAATGAAGCGCCAATGATATGAACCGC
AACAACACCTGACAGACCGCAATGGACCCTAGAAGGGACGCCGCTGCTGGCTCTGCGCCC
CAGAGAGCCATGCACGCGCCATTGGCTTCATCTTCCACCGCCCCTCCCCGTGTTCCAGAG
TACCATGTGCCGGGCACTGTCAAGCCCGTCCTCAACTTCTCTATCCAGACAGGGGAGGAG
TTTGCCCTCGAGTTCATGAGGGACCGTGCCATGTCCCAGAAGATCCTGGCCCCTGGTACG
TCCGGAGACCAGAACGCGGCGACAAGCGGTTACATGGACCTGAGAGGAATGCTTGGTGCC
AGCCACACCGCATCAGAAACTGGTCCTGATATATTCATGCTCCAGCCTATTGTTGATCCG
CGGCACAAGGAGCCCGAGAGAAAACCTGTTGCTCCTCAGGTTCAGAATAGAAGCAGGCAC
TCGTCTACCAGGTCGGTTCCGCGAGCTCTGTCAGGTGGCGATGGCAGTAGTCGGGGACTA
TCTCATGGCTATGCTTCCTCTGATGCTTCGGATGCCTCCAAGAGAATCAAGTTCCTGTGC
AGCTTTGGGGGCAAAATCTTGCCCCGTCCCAGTGACGGGAAGCTTAGGTATGTCGGCGGT
GAGACACGCATAATTCGAATCAGCAAGGACATTTCCTGGCAGGAGCTCAGACAAAAGACG
TCTGCCATCTTCAACCAGCCACATATCATCAAGTACCAGCTCCCTGGTGAAGATCTCGAT
TCTTTAATCTCGGTGTCGGGCGACGAGGATTTGACAAACATGATGGATGAGTTCGCCATG
ATTGAAAGTGAGGGAGGTTCTCAGAAGCTCCGTGTTTTTCTGTTTTCCTCACTCGATTTC
GACGATAACCTGGGCAGCATCGATGGTGATTCTGAGCTCCATTATGTTGTTGCTGTCAAT
GGAATAGATGTAGGATCAGGGAAGCCTTCGAGTGGCCATGGTTTAGCAAGCACATCCATG
AGTATGATGGAGCAGTTCATTAATCTCAATAATGATAATGATCAGTCGAACCCAAACCAA
GGCATGTCAGATTTTCATGGTATGCGTGGGCCAACTTTGGTGCCTTCTGCTACTGTATCA
ACACCAACACCGCCAAGTTTATCCAGTGATTACACTGCAAATTTGCAATCTTACCAAGGG
CAGGAAATGCTGTATGCTCAAGGCTCTAGAAACAATTTCTATGACACTGAGAGACGCATC
TCTATGCCCCTATCTGCGCCCTCAGATTATGGAGTGGCCTCTCAGTATGCGCCACATTCT
GGACCTGCATCTCTGGCAACTCCTGACCAACGGTCTTATCAGGACGGCTTCATGATGCAA
GGTTCTATAAATGATGCAAAGCAGCAAGCTTCCAAGAACACGCTGCATCAGAAAAGTGAA
GTGGACTACTTCCAAACCCTTGAGAATCTGAGTGCTCCTGTGCACCACAATGACCTGTCT
GTTTCAAACAGTATGCATTTGGAAGTGCCCCCTGCTTCTTCGGCTCAAGAAGGCCGGACA
TCTTTTCTTCAACCAAGTGACAGTGGAAAAAGCCTAGAGCCTAGAGAGTTAAATGAAGAT
GACCGCCAGTCCTCTGGTGGAGCTTTTGCATCTGGATGTTCTGAATTTGAGTCTGACATG
ACCGATCATGGGTTCACGGATCCACAACCTGGTTCCGGGCGGACCTTCCATTCTGAACGA
ATCCCGCGGGAGCAAATGGAATCCCTGAATCGGTTGTCAAAATCTGATGATTCAGGCGCT
CAGTTTCTAATACCTCAGTCTCAGTCCGGTGCGGCTAGAGAATCCATTGCAGAGGCTGCT
GATTCTGTCGAAGGAGCTGAAAATTCAAATTCAGGGGCCCCATCACTGAACCTGAATGAA
CCATCTAGCGATGATTGCCTAGCACAGTTTGAGAAAAACTTTGCCAAAGCTGTACCACGG
CCGAGTCAATTTGGTATAATCATACCTCCAGAAGAATCAGATGCTAAATTGATGTCTGAA
AATCCTGTGGTTGAACAACAACAGGCCAGTGAAAAGAGGGCAGTGGATGTCCCTAACATC
ATGAATTCAGTTGAGAAGACTCCAGCTAAAGGTAATTTGAAAGCCACTACCACCAATAGA
ATGCAAAGTGCTAAGAAGCAGCTGGGAAGTGATGCTGCCATGGCACGTCGTGTCAGTTGG
GAGGCTCCCAAGGCTGCGCTCCCTAATGATGTTAAGCATGATCCAGCTGTGCCATCGTCC
ACCAGCACTGTTGGAGCTGTTGCAGATAGTGTATCTGCAGCTGCTAACTCAGAGAACAGA
GATTTTTTTGTCGATATCAATGACCGCTTCCCCCCTGACATCCTTTCCGATTTCTTTGCA
AAGGCGAAAGATGCAGCACAGTCATCAACTCCTTTTAATGATCCTATTCTTAGCTTGAAC
ATGCCAAACTATGAGCCTAAGAATTGGTCATTCTTCAGAAATCTTGCAAAGGATGAGTTT
CCAAGCAAGAATAATGACCAAGGCCTGGCAAAGATTGACGAAGGGATGTATGCATTCGCA
GGAGCAGATAATGATGCAATCAGCGTGAAGGGTTTGAATCCTACTTACAATTTTGATGCT
GAGAAGAAGGCAGAGCCTTCCATCGTAGTCGCTGACGTTAGCAGCATGCCTCCAGCTTAT
GCCACATCACATATTGACCATCTCCCAAAGGTGGAGAGGAGTGCTGAAGCATTTCAAGTT
GACAATCCATATCAACCTGTGGTGGACAATACGAATCTGCCTGCTCCAGATTTCGAGGTA
TGCATGTTTGGTAGAAGCCCACTGTCACTTTTGTCATCACACTGTGTTGTCATATTTATG
ATTATTTTCATGGCTTCAGGAACCTAAGTTCGAAGAGGACAGAACTGCCGCACAAGTCAT
GGATGCTTCCCTTCGAGATTCTGATTTTGAACACTTGCAGGTATGGTGATCAACAAACTT
AAACATGTTTTAGCTAAATTCTCAAACCAGAATCATCTAGAGCCACATGAGATTGCTATC
TTTGTTCATTGTTATCAACACCTTTAAGTGTTATTGTTAGCTCTGGAAAGACAATATTAG
CACTTTCTGGTCCAATGGTTCTGCCAGCAAAAGGGCACCTCACAACCTATGTTACGAGCA
TGACCATTGCCATGCCAACAATGCTCACTTTATTCTGTTGGGAACAAATATTTAACAGAT
CATCAAGAATGAAGATCTCGAGGAGCTTAGGGAACTTGGTTCTGGTACTTTTGGAACCGT
TTACCATGGGAAATGGAGAGGAACTGATGTGGCTATCAAGCGCATCAAGAAGAGCTGTTT
TACAGGACGATCATCTGAGCAAGAAAGGCTGGTAAACTCCTGATGATCTGTTAAAGCATG
CTAGTTTGATTTCCCCATTTTTCTAGCATATAAACTACGTTTATGACACTGGGTTCTGAA
TATGAAAGGTAGTTGCAGCATTACTGGACATTAACATTCTCGAAACCTGTGACTCATATT
ATTAATGTCTATATGAGAGTAGGTTCTGAATATGAAAGGTTGTTGCAGCATTACTGAACA
TTAACATTCTCGAAATCTTTGACTTGTATTAACAATGTGGTGTTATGCACCACAGCCGAA
ATTTCAGCAGAAAAGAGATTTTGAGTGCTGTGATGATGCTCTAAATATTGTGGTTTTCTA
GGCACAAGAATTCTGGCGAGAAGCTGAGATTCTGTCAAAGCTTCATCATCCAAACGTAGT
AGCATTCTATGGTGTTGTGAAGGATGGGCCAGGTGGTACCCTGGCGACTCTGACCGAGTT
CATGGTTAATGGTTCTCTTCGGCATGTCTTGCAGCGGAAGGACAAGTAAGCTCTTCCTGG
CTTTATTTTTGCATTTGCCCTTCTCTGGATCTAAAACGTATAAATAGCCAAGCAAAAAAG
TAATAACCTATTGTGTAATATAATTTGAAAGGTGTCCTGATCTCCGCAAGCGGCTGATCA
TAGCGATGGACGCGGCGTTCGGGATGGAGTACCTGCACTCGAAGAACATTGTGCATTTCG
ACCTGAAGTGCGACAACCTGCTAGTGAACCTCAGGGACCACGCACGTCCTATCTGCAAAG
TAAGCCTAGTTGTTTCCACTCCATCCACTTAAAAATAGCATTGTGTTGACCACCCGTTGA
GTAAATTTAATAGTATCGTTGTGTTTGTTCAGGTGGGTGATTTTGGGCTGTCGAAAATCA
AGAGGAACACCCTGGTTTCGGGCGGCGTGAGGGGGACGCTTCCCTGGATGGCTCCAGAGT
TACTCAACGGGAGTAGCAGCAAGGTGTCTGAGAAGGTAAGACCGTCAATGTCATGGGTCT
TTTGTAGATATTGCTGTACTGATATCTAGGCGTGGCCTGCACCAGTCGAAAGTTTAGTTA
GCAAGAAATTAAACTAGCAGTGAATAAAAAAAGTATATACCCCGTAAATAAATGAAGTAT
ATATAACAGGGAGAGTGTTTTTGTTTTGGCATAATAATGGATGCAGGTGGATGTGTTTTC
GTTTGGCATCGTGCTTTGGGAGATCCTGACGGGGGAGGAGCCCTATGCCAACATGCACTA
TGGCGCAATAATAGGTATTCTCTTGCTGGAGCTGTCCTTGTTCTTGTCCACTTTGTTTGT
GATATGCTACTGGTGTTTATGTAAACTAGTGTGGTGGTTGATGGATGGTACTTGCTTGCA
ATTGCAGGTGGCATCGTGAACAACACGCTGCGGCCACCGGTGCCGGCCAACTGCGGGCCG
GACTGGAGGAGGCTGATGGAGCAGTGCTGGTCGCCGGACCCGTCACAGCGGCCGGCCTTC
ACGGAGATCGCTGCGCGGCTGCGGTCCATGTCAGCTGCGGCCAACCAGCAGGCCAAGGCA
GCTGCAGCGGCCAAGTAGAAATACAAATCGCCGGCTGTGGGTATGGGGTGGTGTATGTAT
TGCCTGTCTGTCTGTCTGCCTGCCTGCCTGTCTGTTATAGAGTTGTGAGTGTAAAAATAT
TGGTCAGATGAAATGAAATGAATGGGGTGTAAAGATACACACATATTATGTATTATTATT
ATTATTATATGAACAACAACAATTTTATATTTATTATTTTGTTTGTTTTATATTGCTATA
TATATAAGTCGGCCCAAAACGACTTTTTCTTTTGGGGGTTTTTTGTGTCAAACATGTACT
TCCTCGGTCTCAAATAAATAAAGTGAATGAACTTTGTATTAGCTAGTATAAAGTTGAGCA
TAGAGGGTTAGAGCAACTCTAGCAGACTCCTTACATCGTGGACCCTTACAATGCGATTAC
AGATCATAAGAAATGTGTTTTGTGGACCTTGTATTGTGGAACTGTAAAACAGGATATTAC
CTTGTATTGTGGACTCCCTCAAACAGGTCCACTGCCAACCGCCCACCTGCGTCGGAAGGA
CGGGGACGCTCACCACCGCTGCTCTGACGACCATGCCAAGCCGGATTTGTGCGCACCAGG
GGCCGAGGAGGCAGGCAACGCGGGGAACCTGGCCGAGAGCATCGCGCGTCCTCCCTACCT
CCGTTGTCCGCACCGCGCCCCATCGTTGCCCCGAGTGCGGCGCCGCCATTCTCGCCTCCG
ATGCCCAGGTCCGTTTCCCCTCCCCATCTGATTGACCCGGCCTTCCTAATACTCCCTCTG
TCCCGATATTAATGTCTGACCGGC