morexGenes - Barley RNA-seq Database

Contig contig_275343

Source Contig contig_275343

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_275343 (2367 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_275343

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44776	2	798 bp	MLOC_44776.2	Available	Available	LOC_Os01g66230.2, FRAME:-3, EVALUE:2e-54, 13101.m07171 protein csAtPR5, putative, expressed

CDS Structure of MLOC_44776

Contig Sequence (2367 bp)

>contig_275343 2367 assembly3_WGSMorex_rbca.fasta
GGAGCTCATCGAGTTCATCACAAGGTAACATACCACTACTCTACTGAACACATCTAGCCT
TGTCGATCCACGGGATCTATCAAGTATTAGTCATATTTCGAGAGAGCGGAATAAGATTAG
TCATGTTATAGCTGATTTTGGGAGGACGGAGGACCGTATTGTGGTTTGGCTCCGCTCTGG
ACCAAACAACATTCCCAGTTTATGTAGAGATGAATTTCTTTGCTCTTGAATAATATACTA
CCCCCTTAAAAAATCCCTCTCTATTTCTATAGGTCCACCACGAGGATGCCGCTGCAACCA
CGTCATTCTTGCTTGAACATACTGGCTTTCAAATCCATCTTCAACCATAGGACCGATCGG
CTTGTCGGGACAGGAACCGAAGAATGTTTATTCAGTGTAGTCATCATCGTCGCCGAAGCC
AAGACTATAAACAACCCAAAACCTATAAGCTACTAAACCTTAAACGATCCACACACGTGG
ATCCGACAACCCCCTTATCACCGACGACCTTGAGGAGAGCCGCCGGAGGACGACGACAGA
AGGAGGCGCTCCATCGCCGGACTACGTGGTGGTGGCCACCTTCGCTGGCCTCTGCTAGGT
AGTCGTGGTCGGGCTCTGTTATCCCCTTCTTTTTTCTGGTCACTCGAACAGCTATGTTTT
GCGGGTAGGCTAAAATGTCGGCCTCTCCTATCCCTTTCTTTTTTCTGGTCACTTGAACAG
GTAAGTTTTGCGGGTAGGCTGAAATGTTGGCCTCTCCTATCCCCTTCTTTTTTCTGGTCA
CTTGAAGAGGTATGTTTTGCGGGTAGGCTGATTTCAGCATGATTCGGAGCGGGGCGGCTC
CGTATGATGGGTGGACACTTCGTGCGGGATGTAATTCAGCCAGCGTTTTCGTTTCATTAT
AGCCTGCCAATTCGGTGTCCAACCAAACACATGAATTGAAAGATTAGAATACCAATTCAG
ATTCCAAGCCTCCAATGGGAACATCCAAACGCAGTGTTAACATACACCACCTAAGCAACG
GTACCGCTTAACATACATCACCTAAGCAACAGTACCACATAATACCATACTCCCTTCATC
CGAAACTACTTGTTGCATAAATTTATTAAAATAGATGTATATAGAACTGAAATACATCTA
GATATGCATTCATTAATGTGACAAATATTTTCGGATGGATGGAGTATTTAAGTACCACAT
AGCATACACCAAGCAACAGCTAGTCAGCTACTACGTCATAATATAAGTAGAGCAGATCTC
AGATTCCACTACATCACAACATAATTAGTACAGCAAATCACATGAGTTTGGAGCTACTGT
TAGCATCAGCTTTCCGAGGTCAGGATCAACGACAGAAAAGGGACCAGCCAACACTAACTT
CCATACTACATGAGCCGACCTTCAGCACACGGGAACTGATACCGGCCATCTCAGGTTTTA
AGGCTACCTCGCTACTATCAGCAACTTTATCGCCGTTAATAGGATATGCCATGGCAGAAA
CTTTCAGCATCTCACAAATGCCAGCGGAAACCACACTGCGTGAGAGCTTGATCATGCCAT
CAGCACCAACAGGCAATCCACCATCTCCAAAACCAAGTAACTTGACTTTCAGATCATCAT
CTGCAGTGTCGCAAGCAGTAAACACACCTCGAAAACCATCTGGCCAAGACCCACCAGTGA
CTTTTATGCTTATTGTGGCCTCCACAGCGCATGGAATGTAATCGTATTTAAATTCCAGCG
TGCTAAGCCTGCTAGGGTAAACGCCTCCAAGCACACATCCAGATCTAAAGCCCAAAACTA
GCTCGCTTAGGTCTTTATCACCAGATTTAGTGGCCCCCTTCACTTTCAGCGAAATCTCAA
TGTCCGAAGGTTTCATCGACACAGCAACAGCACGGCTTGGACCTGTCAATGCTAGGTACG
GATCCTGCACCAAACAATTATTCAAGTAAATAACAGAGTAATGTTCATCGACAGTAAGAC
CGCATCGAGTAGAATGCAAACAATCTACTCTATCTTATGTATGGTAGAAGAAGCTTAATG
AATCACTAAATCTGACATTGGCAAATGCACAATGAGCAGCACAGATATATCCAAGATGTT
AGAGAAGGCCAAATTAAAGAAAGAAAGAAATAAAAGGAATGAAGATTTAATATACGAACA
TTGGCATTGATGATTTGGCAGTTATTCCTCTGTCGCTGGAAGATAATGTTGCGCTTGTGA
TCCAAGATATCACGCACGGCAACCATACCAAACACTTGCAGTGGCCAGTGTAAAGTGTCA
CTGATGGACACGATTTTGAGAGAAACGATCTGCAGAGTTTCCGCGGTCTTGATGTAGTAC
CGCTCCTCCGGAGTAGGGTAAGTGTAA