Contig Data
morexGenes
Links



Map Locations of contig_275339 (4422 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_275339

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44772 4 1443 bp MLOC_44772.2 Available Available LOC_Os04g44950.1, FRAME:-2, EVALUE:7e-134, 13104.m04498 protein short-chain dehydrogenase/reductase, putative, expressed





CDS Structure of MLOC_44772






Contig Sequence (4422 bp)

>contig_275339 4422 assembly3_WGSMorex_rbca.fasta
ATGACATATACGAGGAAGATTTCACAAGACTTGGTGATCAAGACAAGGACTCCTCTACAC
CGACGTAGCCGAACAGGACTCTTGTTATCCTAGGCCTCTGGTGTGTTATATAAGCCGAGG
CCAAGCTAATTGATAGACAATCTCATATTCATATGATCATTATCATTAGGGTTATCATTA
GGGTTTAAACCACAACATACGATCTCGAGGTAGATCAACTCTGTACTCTATACTACTTCA
TCAATACAACAAGAGCAATATGTAGGAATTTGCCTCCATCAAGAGGGCTCGAACCTGGGT
AAAACATGGTCTCCATCGTCTCTTGTTACCCATCGATCCAAGNNNCACAGTTTGGACCCC
CTACTCGAGATCATTCAGTTTTGACACTCACAAGTACCACCCAAGGAAATGCCGACGAGG
CCGTGCTAGCTGTGGCCATGTCGGTGCAGAGAAGCACGTGATGGACATGGTTTAACCCTA
GGTAGACCAAGGCCTCCCGCGTTGCCGCGATCACTCGAGCATTGGTTTCCTCCTGATATG
CTGCGATAGAGAGGCCGGCGGAGGCCGTAGCTCCGAGCTTGCGGTCCTGCGTGTGCCTCC
GACCCTTCCTCTTGGATGACTGCACGACCCGCTGCTCGGGCGTCAACTACTTCTTCTGCA
GCGGCGCTGCAGTCCTGCGGGCCGTGCAGGGATTGCCTTTGGCGTAGGCGACAACGATGA
GGTCGGAGGAGGCGAGGGAGGCAAGGCCGGCGGTGGCTTCGAGGGTCGGCATGTCGTCCA
TGACGAGCGGTCTGGTTCTTGCGGGCTATGCAGGGATTGCCTTTGGCGGAGGCGATGACG
GTGAGCCGGAGGAGGCAAGGCCGGGGGCTGCGTCGAGGGTCGACGTGTAATTTATGGCGA
GCGCCCAAGAGTTTTTTGGAAAAGTGAGGGAAAATGGTGATGGTTGTGCTACCAACTGGC
GGGCCAAGAGGAGGAGTAGGCAGGCATTACGAGGATTTGTTCCCTGTTCACGTCATCGCA
AGACTTAAATTTAGATTGAAAATAGATCAACATGCAGACAAAAAGCGTACACCCGTCTAT
TTGAATTTGACGTTTCGGATACGCGCACTCAAAATGGATGAGGGCGGTGGAGTTGCTCTG
AGGCTACAAATATCGCTACAATCGGTCTGAGGCTCTGAGCACGTAACGATCTACCACAGA
TAGTCCAATTCATCAACGCAAATGCCAAATCCCGTTCGTTATTCTCAGTCTCAAACCACA
CCTAACACGGCAGGCACTGTGATGAGAGAGCTGGCTAGCTCATCGGCAGACGGCCGGACC
GGACCGTGCGCGCACCGCCAGCCGTCAGGCACCTCACACGAACGATGCCTCCTCGCCCTG
GGCGAAGTACTTGCCGGTCGGCCCGCCGTCCGGCAGCAGCGCCACCTTCACCACGTTGCG
TGCGCCCTCCTCGGGCGTCAGGACACCCGAGCTCATGGTCAGTCCTGTCCTGACGTAGCC
TGGATGCGCGCAGTTGACGCGCAGAGCGGGGTGCCTCCTCGCCAGCATCCTCGAGTAGGC
GTTCATGGCAGCCTTGGCAACCTTGTAGGCCGAGTACCCCGTGGGCCACCCGCGCGCCTC
CAGCGCGTCGGCCTCGAAGTCCTCGAGGAACTTGTCCAGCAGCTCGTCCAGCCTCTCCTC
TGTCAGGTTGTCGATGTCACTGAACTCCTGCCTCACCTCCTCGTTGCTGATAAGCTGCAT
AGTATATATAGTTCCAAAGTTCCTTATTGTTAGATTTGATATCCGGATAGCATGATCGCT
GAAAAGAAGATAATAAGAACAATTACCCGCAGCAGGCCAAACTGGGAGGAGATGGTCACA
ATTCTTCCATCGGAAGAAGATTGCAGCAGAGGCAGGAGGGCCTCGGTTACGTGCTTCGTG
CCGTAGTAGTTAGTCTGCAGGCCTTTCTTTGCACCGTCGATGGGCTCACGGACGTTCTTC
ACCATCCATTCGAGCATCTGATCGGAATCCATGCCAGCAAACTGTTGTACACATCGACAG
ATTAACTTGGTTCATTCCGGTATTTCCGAGCAACTGGAGAACAAATCCATCTCACACGAC
GTGACCTTACCTTTTCCTCGCTGGCATCGAGTTCTTGGAGGAACTCAACCCCACCGATTG
CGGCATTGTTCACCTGCAAATTAACAGGCTACATCTATTTCCGTACAACCTTTGATGCAG
CTAGCAGCTGGAGTACACTAAAATGGACGGGAAAACCCACCAGAATGTCTAGTTTGCCGA
AACGGATCTTCAGGAAATCGACCAGTGTAGCAATGCTGGAAGTGTCCGTGATGTCCAGCT
GATGGAAAATGAGGTCGGCGACCCCCAGCGATCTGAGCTTCTCGACTGCCTCCGCGCCCC
TCGTCTCGTCCCGGGCCGTCAGAACGACGGTGACCCCATGGCTGCCTAGTTGCCGGCACA
CCTCGAAGCCGATCCCCTTGTTGCCGCCGGTGACGACGGCAATCCTGGCAACCACAGCCG
ATCAGAGCAGGGGGGCTACATGGCGAAATCGAGAGGTAGGCATGCGTGGACTAACCTCGT
GTTTGGCCGGCCGCTGGAGATGGCTCCTTCCATGAGTGGTGCGCCACTAGCTCAGACAAC
AAGATGGAGAATGGCGTTCCCACAATCAGATTCGTGATGTTATCACGGTCCCCTTCGCCG
TGCTGGGGTCCGGCACGAGCGTAAGACTTCAATGCATGTCAGCATTACCAAACGTACCAT
TCACAGAAGCGTAAACCAACTAGTGGTTGATGGTTGGTACGTATCCCCAGCCTAACAGAT
TTAAGTTCCGCTGCTTGGATTATTTCTAAATTTATTTCAGTATTTTCGACGATATGCTTT
TAGTGAAACAAGATATTTTCATTGATGACGAGGCGTCTACGGTAACTTCGTAAATCTCAA
AATAATATACCGGCTCGGACTCTTAAAAATGCTTATATAGAGGTAGGGTATGTGTGTGTG
CATTTATAAGGATAAATGTATATGTATATGTATGAGCGTTTGTGTCTGTATTGTGTTAAG
AAAAGGCATAAGGGCAAGTTGAACCGAAGTGGCCAAATCATCCGCAAATGTCGAGACAAT
AGGATTTTGATATTTTTTGTCATCCAGCAAATCATCCGCAAATGTCTATGAATTTATCCG
GACGTCTCAATTTTCTCAAATTTCAGTATCAGGAGTCACAATCAATGTTGAAGGTCGCGA
GGAGAGGGCAAGACCCTCCATCTGAATTGTATTCAAATTTGTCTATAAGGCTTTGCAACC
TCGTAAGATAGGTTGAAGTGAACCAGAAGTGCAAGGGACGTAAGGAAGAAGAGATAAACA
AAAAAAAGCACGCCAACAACACACATAATAGAGACAACAAGGAAGGAAAACACAAAAAAA
GCATCATAGGAGAAGATCAACATTGGCCAGCGGGACCAAACCACGAAACTGAACCATCCA
CGCAATCCAACGGCACCTCACAAACCAAGACTGCACAACACCGACACACGACCATCATCG
CAAGGCACAGTTAAAGGCCATGCAAGACTAAGACGTCGCCACGACACCTGTGTGCCATCG
GCATAGTCGATGGGCATCGCCAAGCAAACCAAGTTGAAGTACTACGTCGTCGATGCAATC
CAAAGACACCTGACAAACCAAGACTGCACGACGCCGCGACACCACCTGCGTCGGGGGTGC
ATTCGAACAGAAATGCGAGGCTAAGACGATGCCACGACACCTGTGTCACTACACCACGGC
ACTACAAAGGCAACATGCATCTGTTGGTATAGGTCAGCATCGCCGACACATTTTTTTGTC
CCAAACTGTACCGACACACAGTATATCAGAGTTATATAAGCTGATGACATATTATCTGTC
GCCAAAACTTCTAAGAAACACCGACGCAATTTCTGTCGGTAGATTATGTATTTAGTGATG
GACTGTCTATCGCCGATTCACACGGACAGTAGAAGTGTCGGCGTTGTTCTCCTCAGGCTG
CACCCGAAACATATGTCACGAAAAAGAGCAATCCGCGCGACATGCGAGTAGGATAAAATT
GACACAAGTAAAAAAAATCTTATCCTCTCACCCGAGCCACCACCTCTCTCACCCCACCAC
CCCCGCGACCTAACCCGCCGCACGATCACGCCGCTGCCTCGACCACGCCGCCGCCCCGAC
CAACCGCGGCCCGCGCTGCCCCTCCTCGACCCAGTAGACCCCCCACCGCTGCCCCGACCC
ACACTACAAGAAATATGCTAGTACACGACGCTATTTTTTCATCGCTACTTTGTCACGGTT
TTTCATTTACGATGATCGCACGACGAAAAACCAAGCNNNNNNNNNNGAGCGTCAGAAATG
AACAGCAACGACATTTTGGTCAAAATCGTCGTAACTTTACGA