morexGenes - Barley RNA-seq Database

Contig contig_275180
Source Contig contig_275180
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_275180 (7862 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_275180

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44688	2	2273 bp	MLOC_44688.1	Available	Available	LOC_Os01g52550.1, FRAME:+3, EVALUE:2e-67, 13101.m05501 protein ABC transporter, ATP-binding protein, putative, expressed
CDS Structure of MLOC_44688

Contig Sequence (7862 bp)

>contig_275180 7862 assembly3_WGSMorex_rbca.fasta
GCAGTAGATAGTCAAGGAAGAAGTGGGGGAATGAGTCTTTTGTGAGATAATTCAATAAAA
GTTGAGATCCTTGGTTACTCAGTTTATCATCTTGATGTTTTAGTTATGGAGAATGATCGG
GACAAGTGAAGGGTGACATGTGTCTTTGGCGAGGTGCAAACACATTTACGATACCACACA
TGGGATGTGATGAAAACATAAGTACGTTGAGTACACTTCCGTGGCTATGCTTGGGGAATT
TTAATTAAGTGTTACGTCCAAATGAACACGAGGGAGTGGGACAACATAGTAATGCTCAGA
CTTAGGCCTTTCAAGATGCTACGGATATCTATATGTTGCTTGACCTGGGATACAAGGGCA
ACTTTTGGACTTCTGAAAAGAATGTCGCTGGAGGAAGCTTCACATGGTGCAGACTTGACA
GAGCCTTTTCCAATGCTGATTGGATGGCGAGATTCCCTCTACCTTTAGTCACCCATCTCA
CGGGTGCTACCTCCTATCACTCACCAATTCTAGTGGAGGTGAACCCCGCTCAAGATCGTA
CGCAAAAATCTTTCAAATACGAGCTAAGTGGGAACAACATGAAGGTCTCCAGCAATTCTT
AACAAAGGGATGGATGGCTGGAGCGTCGTGCACCTCAGTAGAGCAGCTGAGACAGAAAAG
AAAGCAATTTGGCGAGAGGTTTGGGGCGATGGAGCAGGGACACATTTGGCAGTGTGCGAA
AGGAAATCAAACAACTAAAACAAGTCCTGGATGAGCTTCGGTCTGACCTGCTAAGATCTG
TACCTTCCCATGCTGAGCTAAAAGTGAACGAAAGACTGGTTGAAATGTATCATAGGTAAG
AAATCATGTGGCGACAGCGGGCAAGAGTGGAGTGGCTCACAGAGGGGGACAAGAACACAA
AATTCTTCCAACTTAGAGCCATTCTCCGGAGAAAGAAAAACATGGTGAAGTCTAGAGTGC
ATTATATGACACAATTTTAGTCCTCATACTAAAGGTGCCAAATCCCACTGCCTTGGCCCA
GTTCAGACCTATTAGTCTCTGCAATGTGTTATACAAAATAGGATCAAAAGTGTTATACAA
AATAGGATCAAAAGTGGTTGCAAACAGATTGAACGTAATATTACCAAATATTATTTTCGA
AGAGTAGTCGGCCTTTGTTCCAGGAAGGCTGATTACACACAACATTATATGTGCTTATGA
ATGTTTACACTTCATGAAAAGGTCCAGATCCAAATCTAATAGCTTTTGCGCCTTGAAGCT
CGACATGGTGAAGCCCTATGATACGCTGGAGTGGTCCTATCTGCGGACTATTATGATAAA
GTTGGATTTTGCAGCTCAGTGGATTAACACGGTCATGGCCATGGTTATATCTGTGTCTTT
CTCAGTTTTTTTCAATGACGAGAAGCTCGGGTCCTTCAAACCAACCAGAGGAATCCAGCA
TGGAGACCCAATATCCCCTACTTATTATTGATCGCAACAGAGGGACCTTTCGTGCCTCCT
GAAATCTAGTTCTCAGTCATCACTAATAGGTATTAAGGTGGCTCCCACAGCTCTATAGGT
TAACCACATTTTATTTTTTGATGACAGACGGCTGCTATTCAAGGCTAGTGTAGAGGGAGC
AGTTGTAGTGTCAAACCTACTTGATATTTATTGTGCAGCTTCAGGCAGAGGATAAACCAC
GAGAAGTCTTCTATTTTCTTCAGCAAAGGGTGTCATGATAGTATCAGAACTGAGATAAAA
AAAACTCTTTACATGTCCAGAATGAATCATTGTCTGTTCGGTACTTGGGTATGCCAACGG
ACGTTGGACACTCGAAGAATAGAACTTTCAAGTATTTGAGAGACAAAGTATGGGAAAATA
TCAAAGGGTGGGTGGAAAAGTTGTTGTCTTCTGCGGGCAAAGAAGTCTTGATAAAATCCG
TCGCACAAGCTATTCATGTCTACTCTATGTCTTGTTTCAGATATCGAGGGGCCTATGCGA
CAATATTACATCCATAATAAGGCAATTTTGGTGGGGCAGCAAGCATGGCAAGAGGAAACC
GAGGTGGTGGCATGGGAAGTTATGACTATGCCGAAGCGCATGGGCAGCTTAGGTTTTCGC
GACCTAGAGATCTTCAATTTAGCCTTGCTGGCGCGACAAGCTTGGCAAACAATGACAGAT
GTTTCTTCTATCAGTAGGAGGATTCTCAAATTTGTCTATTTTACAAATTGTTCACTGCTT
GAAGCTGAACTAGGGACGCATCCATCCAGATATGAAGGGCTATTCTAGATGGTAGGGATG
TGCTCGCGCAAGGAATAGTAAGAAGAACTCAGGATGGAGAAACAACAGATATCTGGGCAC
ACAATTGGATCTCGAGGGACAGTTTCAAGCAACCGTCACCTCCCTGGTGCAAGATCCGCC
TACAAAAGTAGCGCGGTTTATTGATGCAACCACAGCTTCATGGAATGAAGGTTTAATTCA
CACTGTTTTTAAACCTTTTGATGCGGTGGAAATTCTTGAGATCTCTCTATGTATGCGTCG
GGTGGAGGATTTCTGGGCTTGGCATGAGGAACCACGCGGCACCTTCAGTGTTAGATCTTC
TTACCGAATGGTTGTGAGGACAAAAATGAATCGGTGGCATGGTTGCATGAGTCTGAGAGT
TCCTCCTTCAACATGAAAGCAAACAGTGGAGCAGGATATGGCATATCGAAGTTCCATCAA
AAATCAGGATGTTTGTATGGAGGTTGGCTAGGCAATCTATGCCTACGGGGGAGCTCCTAA
AACATCATCATATGTCACCAGCGGACACATGTAACTTGTGTGGGGCGACGGACACTTGGA
GGCACGCTCTGTTCACTTGCCTGATGTCTAGCAGCATTTGGGCTTTGGAACCCGTGCACT
TGGTGCATGCATTGCTTGAGCACCAGGAGGAGAGCCCAAAGGAGTGGCTTTTGTGGCACA
TGAATTGATGAGCAAGGAAGATTTTGTGAGGATGATCATCATGGCGTAGGCTATATGGAG
TGCAAGAGGAAAGGCCATCCATGAGGAGATCTTTCAATCACTAGGTACCATTAATGGTTT
CGTTGCTAGGTACCTGGCAGAACTCTAGCTGTTGTCGGCAATTGCCTCAAAACTGGTGCT
TATGAGGACCCCAAGACCGACACAGTGGTAGCCTCCTGTGAAAAACAGCATGAAGGTAAG
CATCGACGTGGCCACCTCTACAAGGGGGAGATATGGAGCGGTGGGGGCGGTATGCAGAGA
TGAAACCGAAAAGTTCCTCAGAGCATCTTCACTTGTTTTTAGGTACATTGCTGATCCGCA
GACTCTCGAAGCCCTAGCGGTAAGAGAGGTGCTAGCCCTCTTCGATGATTTGTATCTGCG
CCGTATCCACGTGGCTTCAGATTGCAAGGTTTTCATTGATGACATCCACAAGGAAAATGT
GTCAAACTACAATGCAATCAGCCATGAAATACTAGATCACTATTTGGTTTTTGATTTCTC
TAATTTTAGCCACGAGTTTAGGAGCTCAAACTTTGAGGCTCACAATTTAGGGAAGCATGC
ACTCTCTTTCGGGGGTGGCCGCCATGTTTTGTTAGGTGATCCTCGAGATCTTCCATCCAT
CCCTGTAAACATTGTGATGATTTAATAATAGCTTCGCGAGATTGTCTAAAAAATTGTAGA
AGCAAGACCATGCTGATTTTTGCAAGGACTTTACTATAATTTCTTGTTTTTGTGAGGAAG
TTCTTGTAAAAGCTGATTTTATTTAGTATATGGTCTTTGGCCTTTTTCGCAAAAAAAAGG
GTCCCACAAAAGACTAGATTAATTCGCTCTGAAAAGTGTGTGCATTTTTTATACACTAAA
AGATATTTGTTTGCAACAGTGAGAGTGTATCACATAAATAAACCATATATTACGGGAGTA
AATTTTCATCAAAGCCGTGTTTTGGCAAAACAAATACTATATTTTGTTTTGAGATCTACT
CCCTCCGTTTCTAAATACAAGTCTTTTTAAAGATTTTATTTACCACAAACTACATATATA
AATATATGTATAGACACACTTTAGAATGTATATTCATTTATTTTGCTTTGAATGTAGTTT
CTAATGAAATCTTTAAAAAACTTATATTTAGAAACGAAGGGAGTACAAAACAAATACGAT
GACATACATGCACGCATGCCTTCCAATTTATATTAGGCGACAGATAATTTTGTGATGGAC
AACCTCCTAACAGTGTAGTATTTAAGTCTGGCACGGTAATAATACCACCGCATATGTTTG
GTATAGTAGGGGATTGAAACGACGCCACTTTTGTCCTGTTAACTTTATACCCCCTCCCCC
GAAAAGCAATTTCACTTGACTAAGATATCAATAATAGCAACCCGCATGCTTTATGAGAGA
TCGAACCCTACACTGCACTAGAGGCCCAATTGGCAAAAAGGTTGCATTGGTAAAGATAAG
GTAACCCTATATATAAGCATTATTATTCTTTTTTTTTTTGCGGGAAATAAGCATTAGTAT
TCAACATCACATAAAAAAGAAAACTAAAAACACCACGATTATAATATTAAACACATAAGC
ACCCTCATCGATCAGGCAGTGAAGTTTCGGTCTCGCGGGCCAACTTTCGCTTTGAGTTTG
AATCCCAGCCCGTTGTTTTTTTGTGGCGCATCCTTTCTTTTCAAATGTGTTCAAACTTCT
TGCGTTTACATAACGTTGGCAGCAAAAAAAGAACAAAAAACTGATATAATGTTTCAAAAG
TACACTAAAAAAATAGCAATATACTTCAGTGCAGGAATACTGATGGATCTGTTACAAAAG
GTAATGCAGGTACAGGCATGATACTTAAGGATCATGAGGATGCCATTATTTTTAGCTCCT
ACATGTACTGATATTTTAAAAGCTAAGTTATTAGCAATCTCTGAACGTGTTAAGCTGGCA
TTACAATGGAGTAGTCTACCTGTTCAGATTGAATCCGACTGTTTGAAGGCGGTCACAATG
ATCAAAGGTGAACAAGGAAACAAATCAAAATATGCTTTTATTATTAGAGAGATCGTTAGT
AGTATGAGTGAGAGAGATTTTTGCATTACTCATATCTGTCGAAACTATAATAGTGCTAGT
CATTCACGGTCAACTTTGGTAGGTCGCAACGCCAAACCGCGGTTTGGCTAGGCTGATATT
ATTGGACATGATTGTAACTCTTAAACTTTGAGTAATGCAAGAATTTATTCACAAAAAGGA
AAATACTTCAGTGCTTATGATGTTGCTGCTTTTACTTTGTGGGCCTTCAAAACATCATAT
CATTCTAATTTATTTTTCGCAGCGCAGGGAGGAGAGGACGCTCTAACCGACCAACTTTTC
AAAAGCAAAGTTAAGAACGGACCGGAAAACACACGCGCGCGTGTAATCCTGTGCTATATA
AAGCCCCACTGCCCGGTCCATTGCATTGCAGCAAGCACAGCAAAGCGTTGTAGCGATCGG
TGCTGGCTGGCTAGTGCCACCGCTACCGATACCCATCCCGGCAGACTACTTACAAGAATC
AAAGATGAGCCCCGGCACGGCGGCCACGGGCGGTGGCGGTGGCGAGCGGCGGAGCATCCG
GGGCCTGTTCAAGTTCGCGGACCGGGTGGACGTGGTGCTCATGGCCCTGGGCACGCTGGG
CGCCATCGGCGACGGCTGCTCCACCAACCTCCTCCTCATCTTCGCCAGCGACGTGATGAA
CTCGCTGGGGCGCGGCCACGCCCAGCAGCAGGGCAGTGCCACCAGCGCGCACTTCATGCA
TGACATCGAGAAGGTTTGTTAATTACACTTTTCACTGTTGGTTGGAACACATGAATGAAC
TTCAGAGGAGAGAATTCACCGGGATTCTCGCTCGAGAAACAAAAACAAAACGGAACAGGC
CTAAGTGAACAGCACAAGGACGTTGCAGTTCGTTTGTGCACATTTCGAAATTTCCCAGTG
CCGGTTGCGCTGCTGACACTAGAGTTGTTGCTTCCATTTTGTGTGGTGCAGTCGTGCCTC
AACTTCGTCTACTTGGCGTTCGCCATCCTGGTGGTGGCCTCCATGGGTAACCTTCATATA
CAGATTTGCATAGCTCGCCAGATTGCTTCAACAATAATACTAACTTGTATGTACCCCTAT
GAACGCACGGACGCACCCAGAGGGATACTGCTGGAGCCGGACGAGCGAAAGGCAGGTGCT
CCGGATCAGGCACCTGTACCTGGAGGCCATCCTGCGGCAGGAGGTGGCCTTCTTCGACTC
GCAGGAGGCCACCACCTCGGAGATCATCAACAGCATCTCCAAGGACGCCTCACTCATCCA
GGAGGTGCTCAGCGAGAAGGTACTACCTACACACCACACCAGTCAAACCCCCTAGGTCTT
GGTTGGTTAATTTGCTTTTCAACGACCTTCCTTGATCATACGTACTACTACGCGCTACCC
AGTCTTCACAAGTCACGCACGCCTCGCCTTTTATATTGTTGGATCCACATGTAGATTCGC
CTTGGGACTTGGAACCTTCTTCCTTCTTGATTCATGTAGTACTAGCAGCGCTTTGTTTAT
AAAGACGAGACGAACCAAGGACAGGAGAAAAGTTCCTTTGTCAATTGTCATGGTGGCATT
CCTACCTACCTTGCCACTCTAGGCCGTCACTGAATCAGTGCTGAATCTAATTGTTTGACT
AGTTATCAATGCTACCCAACCACAGAATCAGGAAAGAGAGAGTGAGAGATTAGTGTATCT
CGTTTTAAGAAGAAAAAAAATGCAAATGAAACAATGATGCTACTGCTACAAGCATATTCC
GGGTTCTGCGGTTTTCCTCAAAGGTAGACCAGCAGAGGGAATATGGGAGCACATTTGACA
AAGCATGGAATGTTGAGATGATTCCTATAATAACGACTGCATTAAAATAATTCCAAAAAT
AAACATATCTGCTGGAGCCATCAAGACAGAAGAAACATAGTGCTGTGGTTAATTTCGGAA
ACACTGACCTGGTAAAAAATTAGGTGGTGAGCAGTATATGATAAATCTGGCCGTCGATTT
TTTAGGGTATTATTGACTCCTTAGCCCAAAATTAGAATTTACCGTAAGATTAACACAGGT
CCGGTACACTTAGCTGCCGGCCGGTGCTCGCCCGTATCTTCACGTCGCTCATTCAAAACA
AAGCTAGCTTTACCTCCCTCTTGGATTCTATGTTGTTGCATCTGCTGGGCTTGCTGCAGC
TGGTGATGAACCGATCTCTACCTACGACGCGTTGCCTTCTCTCTGTTGTTCGCATGAGCT
GCCCATCAAAAAATCATCTCTCGCTCTAGGATTTGTATGCATGTGTTTCCTTCTTTCCAA
GCAATCCATCGGTTCAGTTTTCTCGTCTCTAGAGAATTTCTGATCAGGACGGAATGTAAC
AGCAGAGTCAACACGAAGGGGATAAACAAGAACAGGAATAGGATGGGCTAGCTCGTGAAA
AGTGGATGAAATCAGCTTTGTCGTATTGGATTTCTTATTAACTGAACTTGTGTGAGAAAA
TCTTTGTGTAAATGCTGCCAGATAATGTCCAGTGGATAATATATATGACAAAGGATCGAA
TCTTGCGGCTTCCAATTCTATGCAGTTGCATAGGATCGACACCTCCACCATGGTTGTCAT
GGCCCGTGGCTCAACGCCCGAGGAGTAGCACGTCGAAGCCTCTTACTAGTGTGTGTATTA
CATGGGGATTCTGGGCGTGGAGCACTGGGATAACCCATGGCCACGGCTCACGGGCTGCCA
TGGGAGTTTCGAATGGCCACCACCGGCAGCCGGATCCAGATATATAGGAAGAGTCATTGG
GATTTGTTCAACATGTAACTTACGATTTTGCCCCCAGATCCCGTATACTGCTCATCTGCC
CC