Contig Data
morexGenes
Links



Map Locations of contig_275010 (4556 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_275010

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44601 1 264 bp AK357274 Available Available None
MLOC_44602 1 834 bp MLOC_44602.1 Available Available LOC_Os11g06890.1, FRAME:-2, EVALUE:7e-74, 13111.m00699 protein vacuolar ATP synthase, putative, expressed





CDS Structure of MLOC_44601






CDS Structure of MLOC_44602






Contig Sequence (4556 bp)

>contig_275010 4556 assembly3_WGSMorex_rbca.fasta
AGCGACCGCCGGGCCTGGGGCGACGCCGGAGCGCCGGAGCCGGCGACTGCGCCTGCGCGG
GCGGGTAGTAGTAGTAGCCCCCGGCCCCCGCCACCGCCGCGTACTCCATGCCTCCGGCTC
GATGCGGGCCGTCCCCTCTCCCTCCGCGCTGCGCGATGCGGTGCGGCCGCCGGCGCCGCC
GCTCTCTCTCCCTCTAGGGTTCTTCGGTTTCTCTGGGAAGGCCGCTCGCTCGCTGGCCCT
TGGCCGGAAAATGCCACACGACTTGGTTTTCTTTGTGTCCAAAAACAATACTCCTACTAA
CATTGTTTCTACTGATTTTTTCCAGCATCGTATTCGAAAACCATTATAAAGCATGGCTAT
TATTTTGATTGCGATTTGGTAACGACAAATAGCCGTCTTGGTTTTTACGCGTCTTGTAAT
TTGATCTTTAAGATACGGATGCGACATGTATTACCATGGAAAAAGTAATGATAACAAATA
ATATCTGTATTCAGATATATCCATTTTTAATTGCTGGTAGGCATTGTTTGCGGGAGTTGT
TGTTCTGACCGGACCAAATGTGACTTGGATTTTCGAGACAAAATGAGGGTGTAGGACGAG
GAGATGCGGCTCAGTTCCCCTTTAGGGGCATCCACAGTTTAGCCTGAAGCTAGGCTCGGT
TTATATATTCATCGGGGTTTATTCCGGATTTCTTTGGCTAGAATGACATATTTTTTTGAA
CGATCACGGAGGGGGGAGCTTCCCCAGGTGAACATTAGTCAAAAATAGGGCCCGAAGGCC
TGAGTTACATTAGAGGTTACATTGAGAAGAGAGAGAGTGGCGCCAAGCGATGGCGGCCTC
CCTAGCAACCAGGTCTTTAAACCTAATGACCCACAGAGTGAAACCAAATGTTGCATTACG
TATAGTGTTCATAGCAGAGTGATTCTCATTGCGAAACACCTCGGCATTACGAGAGTCACA
TAGTTTTCAAGGAATGGCGAGTGCCACCATGGGCTAAATGTTGATGCTGAGGCCGGTCGG
GGTGGCGGTGGTCCAGATGAGACCGATGTCGACGGCGGCTGAAGTTCGAGAAGAGCCCAC
ACATGGACTTCCCCAGGGCAACGAAGTGCCAGGTGTGACGTGTCTTCAAGCAGATGAGCA
CGCCTCGGACAGCAGGAGTCGGGTGTGATAGTCTTGCCGTGGAGGTTGGCCTTGGTGTTT
AGCCTATCTTTGAAAAGCAACCAGGCAAAAATCTTGACCTTGATGATGGCCCTCGAGCTC
CAAATACAACCGAAGTGAGGGTCGATCTCGTCGGGATAACATGATGTGATATCCCTACTT
TTTTTATACTTAGTGTATACGTTGTTTCGTATGGGTTAACAAATATTTATGTGTTGCTTT
AAGTGCATGTTGCTTCCAATAGAAGAGTTCCTAACATCACGTGGACCAATCTCTCCTAAC
ACCCGAGCCTACATGGCCCACGGGGCAACATGTTGAAATTATGTGTTGATCACGCCCTTT
ATAGAGCTCGAGGGTGACGCGTCAGGTCGTAAGGAGAAGGTGTGACTAGGACGGGAGAGC
TGCCAAGGTGTGATGGGTGATAGGAGGAGGGTGGAGGGCAGTGGCGGAGCTTGGTAGGGG
CCAACCTGGGCGGCTGGGTCATCGCCCCACCCCTCTCAAAAAAAATCAAGCCCATATAAC
TTTTTTATTAGGATTGTTTTTCATTAAAATCAACTGGAATTAATTATGTTTCCCCCCCCC
CCTCATGTCTTTGTCTCAAGCTCCGCCACTGGTGGAGGGGGCCGCCGCGTGGGAAGACTA
CCCCGAAGTGAAAGAAAATTTTCACGCGCATCAATCAACCATGAAAAAGGGATGACTACT
AAACATGTGCATGGGCTGCTCGGTCCAACATCCCGGCCGAAAATCTCTAGTAGAATAGGG
TCCTTATCTTTTGGACCCTGGGAAGTGCCACAAGCGTGGCACGAATACATGGAAATCTGA
ACATTTTTATGGTAATTTTTGTGACATGAGGATTACAACTTCCTTTTCAAATGGTAAGTT
TCAGTTTTTTTTTCTTTTCAAATGACAACTTTATTTATAAAAAGGCCAGAATGCTCATGC
CACAAATGTGACATTTATCATTTCGGTATATTTTTCTCCAATATAAATTAGGGTTCTTTC
TTCTTTGTAGGGTACTTTTGTTTTTCTCACGTCTCTTAAGTTATCTTTGGCAGAGATGCA
CAAACGCAAAAAACTATGTAATTTTGTAAATTCTTAATAGAGTTCAACATTTTAAAAAAC
ACAGCACTTGAGCTTAGGGGCCAAAAGAATCAACTATATATGTCATGTCTTTCAAGAGAA
ATTTTCAAAAAACCTTCAATTTTATTTTTCATATGCAAACTATCAAACACCAGTGTGTGC
TTGATAGTTTCACACAGATAACCTCAGCTAGTAGTTGGCATCACAAAACATATAACCAAA
CTAACTAACATACAAAACACAACAATCCCTGCATATGACCCCAGACATAACAAAATGAAT
CTAGACAAGAATCACACACAAAGGTGAAACTAGGTCTAGCTTTGCTTATTCATCACCACG
TCCCAAACGGCTCATCGCCGATTATTATTCCAAATAATAAATACAACAGGTGCTAAGTAC
GAGTAGATACAGGTAGCTTTGCGTTGCCGGATAGAATAAAATTACAGATGGAGGGCGTGG
AAATCCCTATGATCCCACCCACATTATGTTCCTCCGCCGAGGAGCATGAACACAAAAGAA
GGAACCACAGCGTAATGCCAAACAAGTCTCTAGGAAGAAATAAACCCTTTGAAACATAAT
ACAATGATGGACCGTGTGCTCCTTGCTTGCAAGCGCTTTGTTCTAGTCGGCGCGGGATTG
GCCGGCACGCGAGGAGAGGATGATGCCGACAATGAGGCCGTACAGGGCAAGGGCTTCGGC
AAAGATGAGGATGAGGATCATTCCGACGAACAGCTTGGGCTGCTGTGCGTTGGCCCTGCA
GAGGAGGTAAAACAACAGAATCAAATCAGTACTTCAACAACTTCCAGACAAAAAGGTTGT
TGTCCATAGAAAGATTGATCTACCACTACCAGAAGGTACATCCTAATAATAACAAAAGAG
CAAAACCTAATAAAACATATTGACAACCGAAAGAAATAAAAAGTGAGCCACTGGCTACAA
CACGATTGTACCGATTCCCCCCTCCAGAACATACCTGGTGTTCAACAAAGCTCAAAGTGC
AAGGAAAACAGGAGTAATAGAAGATTCAGAATGCAACCCTTGATGAATTTATTAAAGCAG
GGCCACTGGGGAATCTAGTTAAGTGACAAGCAAAACCCTGTGTGATGCATGCAAACTAAA
ATAACATGACTTGTCATAACTGAGACCAGAGGATGGTCATGGTAGTCAAAGCAGATATGG
CCAGTGTCTCCAAATAGAAGAAACCAGAAGTGTAACGCGGCCGTAACTCTTTAGGGCGCT
TAATCAAGGACTTCTGATTATGAGAAGTTAGCCCACATCAGAAAGCCTCTCCAAATACAC
TAACTAAATCACCACTTCCATGTTTGCTTTCAGATTTGCACATTTTCAATCTCTAGGAAC
CTTGGACAAACAGTATGCTATCTGGAGGTCCTAATGCAGGCCAAATTCAGAGTGTAATCA
GCATGGAACCATTATTTTGATTTATTCACAATACTAGAATTCATTCATGCCTCACTGACA
TGACATTATCCAGTAGGTGTGGTTTGACAAGTGAGGCAGCAATGGTTTCATATGTAAACT
CAGATCAAGCATGTCCCAAGTAAGAGCACAGAATCAAGTAGCATGATTTGCTTCCCTGCT
GTACCCATCCTCGTCAGATTTATGCTAGAGTAAGTTCTCAGTACCAAGTAGCACAAGATT
TACATTGCGTACTCCCACGCATTGGACAAACCTCGGAAAGGAGGGAGGGAGAATATATGT
GCGTAGGGGTATACCTGACGCCGGCGTCGCCGACGATGCCGATGGCCATGCCGGCGGCGA
GGCCGGCGAGGCCGCAGGCGAGGCCGGAGGAGAGGTGGGCGTAGCCGTCGAAGAGGAAGT
AGGGCTTGGCCTTGGGGTTGATCCCGGTGGAGATGATGACGGCGATGATGAGGCCGTAGA
TCCCGAGCACCCCGGCCATGACGACGGGCACGATGGACTTCATCACCAGCTCCGGCCGCA
TCACCCCCATCGACGCCACCCCCACCCCGCTCTTGGCCGTCCCGTACGCCGCGCCCATGC
CTGCGTCATCACACGCGCCGCGGTCAGATCTGGAGGAGGGGAGGGGGAGGGGAGATCTGG
GGGAAGGGAGGTGGGCTTACAGGAGAAGACGAGGGCGGCCGCGGCGCCGAGGAAGCCGAA
GAAGGGGGCGGTCTCGTCGCCGCTGAAGACGGAAGACATGGCTGCCGGCGGGGGGGGGGG
GGGGGTCCTGCCCGGGGTCGGGGGGGGGGCGCGGGGGGTGGGGGNGGGGGGGGGGGGGGC
GGGGGCGCAGACGGGCGGCGGGGGGGGGGGGGGGCCGCGCGCCGAGGCCGGGAGGC