morexGenes - Barley RNA-seq Database

Contig contig_274906

Source Contig contig_274906

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_274906 (4616 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_274906

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44537	1	686 bp	AK362925	Not available	Available	None
MLOC_44536	1	956 bp	MLOC_44536.1	Available	Available	LOC_Os01g04370.1, FRAME:-1, EVALUE:7e-60, 13101.m00396 protein hsp20/alpha crystallin family protein, putative, expressed

CDS Structure of MLOC_44537

CDS Structure of MLOC_44536

Contig Sequence (4616 bp)

>contig_274906 4616 assembly3_WGSMorex_rbca.fasta
TTATGTATGATTGTGGGTTCAGGCCCTCGATGTCTAGCTTGCGTGACNNNNNNNNNNNNN
NNNNGGATGTGCTTGTTACCACCAGGGAGAGAACAACGGTGCTTNNNNNNNNNNNNNNNA
GGATTGTTTACCTTAAGCATAGTTTATTAATGCAGTTATCCGTTGATTTGAGTTTACATT
TTGGGTGGGGCTCGCAACTTATTACCGAAGAGATGTTGGAGATAGATATCTCAAGGTGGA
TGATTAGTAAGTAGATGTTGATTCTGTCCACCCAAACCACATGAAAAAAAAGTTCAAATT
TTATGTGTGCAGATTCTGCACTGCACTCAAATTCAAAATGGTTTAAATGGTTTATATCTC
ATGACTGGATATATAGCTATAGTACTCCCTCCGTTAACCTTGTCTTTATCTAGCATCATT
TGAAGGACAATTTTTTTCGAACGAAGGAGTATCTCTTTATGATAAATAAGTTCAAGTACT
ATCTTTTCAATTTGAAAGAATTTGAATTCAAAATTTAACTATTAATTTCATTCAAAATTC
GTTCGAAATTTTGATGATAACCGTGTAAATACGTTTACCGGCCCCCCTAGGTAAAAGTAC
CCCATTCGGTAACCAAAACCTTGGTGGTGCCCTAGTTCCCGCTAGCCAAGCATCCATACT
CCAAAAATCTTTCCTTGAGACCAATGAATCTTTGCGGCTACTTGATAAAAGAAAAGAGTG
ATTTATTATCGGAAATGACCGAATGACATTTTTCTCTAATTCTCTTCACGCTGTCCATCT
AAATTACAATGAGAAAAAGGGTCAAATTTTGTGTATGCAAAATCTGCACTGCACCCAAAA
TCAGCACACTTTATTTCTCATTTATTATTCACCTGTTGGCGATTACATAAGTACCGAAAC
GACTGGGGAAAGAAACACAATACAGAGATTTCTCTCTAGACTCGGCAAGAACAACGACAC
AACTGTAGCATAGTTTCAGGTTGCAGAACTCGCACACATCAACCAAACTCGCTCCAACCA
GAGTATACGTCGAGGCGCATGCATTCAGCCGGAGATCTCGATGGCCTTCACCTCAGGCTT
CTTGACCTCGGCCTTGGGCACGGTGACAGTGAGCACACCGTTCTCCAGGCCGGCCTTCAC
CTCCTCCACCTTGGCGTCCTCCGGCAAGCGGAAGCGCCGCACGAACTTGCCGCTGCTACG
CTCCACACGGTGCCACTTGTCGTTCTTGTCCTCCTCCTCCTTAGTGCGCTCGCCGCTGAC
AACGAGCACGTTGCCGTCCTCCACCTCCACCTTGACCTCCTCCTTCTTCACGCCGGGAAG
GTCGGCCTTGAAGACGTGCGCCTCCGGGGTCTCCTTCCAGTCGACGCGAGCATTGGCGAA
GGCGGCCGTCTCGCTGTTGCTAGAGAACGCCGGGACGATGGAGCGGAAGGTGTCGAACGG
GTCAGCCCAGAGGTCGGCGAAGGGGTCGAACGCGTTGCTACGCCTCACGATCGACATCGT
CGGTGCTGCTTTGGTTTGTAGCTCGGGGAAAATTCTGATCGTAGGTAGGTTGTTGTCTGC
TTTTGCTTGGCGCTCGGTTGAGTTTGGATGGAATGGAGGACGACCAGACCGACGCTGGCT
ACTTATAGCATCGCCGGGTGATGCTCCTGAAGCATCTCGAGGTCTCTCCAGTCCAGTGGA
CGAGCGTTTGTTGCTACTTTATCGCGCGCTTTCCAGCTCGGCTGTGATCTTCCTTTCCCT
TCTATTTTCAGCCCATGAAGTGCCTACCGTGTTCTAGAGTACCCTCCTGCTTTTTCTAGA
AGAAGACACGGAGAAGTCGAGATGCTCTCAGGAGCACCGAGCATACAACTCGCACCGGAG
CTCGGTAGAAGTTTGATTGAGGAAGTGCAGACTAGAAGCATCTAAACAAATGTGCATGTA
GAGGCTAGCAGCCTGTATTAACAACTTTCTCCTCGCACAAGTATCGTTGAATATTTTCTT
TGCTCAAAAGAATCAGTAAAGTGTAGTAAAAAATGTACACATGTCAATATTGTTATTAGA
TAGACATTCAAAAATCCAGTATAAATTTTAGATTTACATTTTAGTTTATTTTTATTAACG
GCACATTATTAAGTTATTTAAAGTGTTGTGCGTCGAGAACACATAAATGAAAAATAGTTT
ATAAGGAAACGCCGGCTTGAAGGTGTGGAAATATGAAAATTATATCATCAAACTAGTTTT
ATATATATTTAAGTTTGAATTTCAGACACTAAAATATTTTAGAAACACGCCCAAACAATT
TCTTTATAATAGAAATATAGGCTTTGTTTAATGCATGCTTTGTATAGAAATTCATTTTGG
TACTCTGACTTTTATAAAATAGGATGCATAATTTTAATTTTAATGATAGTATTGTGATTA
CACATAATAACCTGACGTCTAAAACACGTACAAATTATTAGTGGGTACATTGGGTAGTTC
TTCAGGAGCCGGCAGCTCTGAGATACAGATAAAACTTAGATATAGTTCTAAATCTAAAGA
CTATTTTGGAAAAAAAAAGTGATGGAATGGCCTCCACGAAGCCTATGCTCTCGCTTTATG
CCCGTAGCCAGCTCACCCGTGGTAATTCAATGGAATAGTACAATAACTGTAGTCTTTACT
GTTATAAATGTCATTAAAGAATAAACGATGAGGTTGATCCGAGCCGTTGGATGGTTTTGA
TCGTCATCTTCTCATCGTAACCGTTGGCTGTCTGAATATAATCAGTGTTGCTTTGGTTCT
GGTACCGACAATGCCACCGCCATAACAACCGCCTTGTTTTCAAGGTGAAAAACTTTATGT
CCGGGGAAGGTTTTGTTCAAGAACATTGGCCGATCGGGATCTTGTTGCGTTGGATAACTA
TTCTGTCCAGCATTGCAACATGAATTGTCTTGACGTATCCTTCTGGAGTCACTAGTGAAA
CATATGCTAGAGGAATGAATTTGTGTCCCACGTGTTGTTTCAGTTGGCTGATGTGAAACA
CTGGGCAGATGTTAGTATACTAAGGTAACTGAAGTCTGTTATATACTTCCTCAATCTTCT
CCAGAACTTTTTAGGGTAAATGGAATTTTGATCTCAGTTTCTGGGATCCTCGAAGACCAA
ATGCATTTTGCATGTATGGTAGTTTCTTGAGATATACCATATCTCTTTCTGAAAATGCTC
TCTCTGTTTTTTTTCATATTTGTGAATGTTTAATCCTGTTTTGAGCATGTTCCAAGTTTG
CTTTCAGAAGTTTCATCATATGTTCCCTTTCTGATACAGTTAGACGAGCTTCAGGAGACA
GTGGTTGGTTCAGTGAGAACTCTCCAATCTGGGGGGAGGGGGGGTGTATCCATAGAGTGC
TTGAAAGGGAGTGCATTTCAGTGAGGAATGGTAGGAAGTATTATACCATAGTTTTGCTTG
TGGTAACCATTTCATCCATTTCTTAGGTTCTTGAAACACCATTCCTCTTAAATATGCTTC
AAGGCATTGATTTACCCGTTCTGTTTGGCCATTAGTTTGGGGGTGAGAAGGTGTGCTAAA
CCTGAGCTTGACTCCAAAAGTTTTGAACAGTTCCTGATAGTGAGCATTGGTGAAAATGTT
GTCTCTGTCTGAAATTATGCAGATTGGTAGGCCATGTAATTTGACTACAATATCCATCAC
AACTTCAAACACTGTTTGCACTGTATATGGATGAGCCAAGGGAATAAAATGAGCATATTT
GGTGAATCTGTCCACTACCACTAGGATAAATTCTTTGCCTTGTGAATTGGGTAAAGCAGT
AATGAAATCCATAGTGATGTGAGCCCAAGCCATATCAGGAACAAGGATAGGTTGTAACAA
TCCTGGAGGAAAGATATGGTCTATTTGGTTTAGTTGACAGACTGGACATTCACCTACAAA
AGATTCTATGTCCTTCTTCATACTAGGCCAATAGAACACTTTTTTTAATTCTGTGATATG
TGGCTTTAACACCAGATTGACCTCCAATAGCTGAAGAATGAAAGGTGTGTAACCACTGTT
GTCTGAAACTTGTTTGAGCACCCACATATATCCTGTTTTTGTATTTGATGATGCCATTTT
GAACACAGAACTTAGGATCTTGGCCAACATTAGCAGCTACTTTTGTAAGAAGTTTGTCAC
TGTCTGAATCTCCTCTGTAACTGTTTTTCACATCTTCAGTCCATCGTGGAACTACTGCAG
TGATGGTGGTGCATTGGATGTTCTGCAAATTGTCCCTTCTTGATAGTGCATCAGGTACTA
CATTTATTCATTGCGATTACACAAGTACACAAACGACCGAGGAAAGAAACGCGATACAGA
GATGCCTCAACCAGACTCGACAAGAACAAATCACAACTGTATTTAGGCTGCAGAACTCGC
ACACACATCAACCAGAATGGCTCCGACTCGAATACTCAGCCGGAGATCTCGATGGCCTTC
ACCTCGGGCTTCTTGACCTCTGTCTTGGGCACGGTGACGGTGAGCACACCGTTCTCCAGC
CCGGCCTTCACCTCCTCCACCTTGGCGTCCTCCGGCAGGCGGAAGCGCCTCACAAACTTG
CCGCTGCTACGCTCCACGCGGTGCCACTTATCGTTCTTGTCCTCCTTCTCCTTAGT