Map Locations of contig_274864 (5037 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_274864

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44512 1 1184 bp MLOC_44512.1 Available Available None
MLOC_44511 1 1815 bp AK248329.1 Available Available None





CDS Structure of MLOC_44512






CDS Structure of MLOC_44511






Contig Sequence (5037 bp)

>contig_274864 5037 assembly3_WGSMorex_rbca.fasta
TGGACAAGAATACATGGAGTTACTCAAGCCATTGAATCATTTGACTTTGTTTTCAATCTT
CACTTGATGCTTGTTATTCTTGGCTATACAAATGAGTTGTCCAAATCTTTGCAAAAGAGA
GATCAAGATACTATTAATGCAGTGGCACTTGTTAGTTTGGCAAAGAGTAGAATGCGACAC
ATGAGGTGTCATGGTTAGGAAGAATTTCTTGCAAAGCTAACCCTATTTTGCCAGAAACAT
GACATTCAAGTTCCTTTGTGGGAGGATACTTATGCAGGGGCAGAATTAGCATGGGTTCAC
GTCTAGGGCCAAATTAGCTTCAGTGGTGTATTTTAGAGATTTTTTGTACTTAGTAAGTAG
GTATTACAAAGACTATTGTCACTACACCTAGGGCTATAGCCCCATTTTCCCTAGGCCTGA
TTCCAACATTGTACTTATGAGCATCATGGAATATCACGTTGGTATAATGAAGTTCAAACA
AATGATGATCGTTATAAAAGAGAAGTATATCTTGGTGTCATTGATCAAACCATTCTATCC
CATGGACATATCAAGCACGGATTTGATAAGGCTAGAATTTCAACTTGCTACTTTTATTGA
TGATACGAGACAAGATGATATTGGTGAGCTCTCTATTTTACTTGTTGCAACAAAGAATCA
TATTCTCTATGATTTGGTCTACTTACTCATCAAATTGATATTGATTTTACCGATGGCAAC
AACGAGTGTTGAAAGGGTATTTTCTGCAATGAATCTAGTGAAAAATAAATTAAGGACTAG
TATGGGTGATGATCGTTTGGTGACAATTATTAAGCGAGATGTGTTCATGAAAGTAAATGA
AGATGACATAGTTGATGCTTTCATGACAATGCAACGACGTAGAGTTACCTAGTGTTGTAA
TTTTCTACTTCTGTTACTTTCATGTAAGTCTTTTCTATTGTAACTGGGCACATTTGAAAT
ACATTTTATGTACTAAATGGTTGTGAGATTTCAATTGAGCTATTTATGTTACTCATTTGA
CATATTTTGATACATTTGGATTAGGTAGGAAAAAAATAGAGTGCGCATGCCCTTTATTTT
ATTCCTGGGTACCCACACAATGGAACGCAAAAATATCCAGCCGAGCGAGCAGTAAATCCA
CCATACGGGATGTGCATACTTAATACTCCTACATTGCAACAAATAATCGTGAAAAAAAAT
GGAAAAAGAAACCATATGCGATCAGGCACATGACGAAGGAAGGGTCACATGAATGAAGAA
GAGAGAAAAGCCACATATCGACCCGAATAGCGAAGTGTGGGAGCCGCGATGGCGGGCACT
GGCAGCCATACATTGGGCTATCCAAAATCTCATCTCTCGCCCAATCCCGGCCTCACGATC
TCAATTCTCACCCCGCGTGCACCACAAGCTCCAATCCCCTAACTCGTATATACAGCCACG
CCCGCCTCACCGTCCTTGATCTTCCCCCCTATCTGATCGGATCCTTTGGACATGGCGTCG
CCCATGCTCTCCACGGCCATGGCGCCACTCCAGGTATTGCTCGTGTTCCATTTCCATTCC
ATGCTTGCGTAGTAGTACAGTTCTTCCATGTTTGTGACGCGCGGTGGTTATGTAACTGGA
CTGCCATGCATCCTCTGTCGATCCAGGGGGGCATGCTGGAGTTCTCCGGGCTGAGGAGCT
CGTCGTCGCTGCCGCTCCGGCGGAATGCCACCTCCGACGACTTCATGTCCGCCGTCTCCT
TCAGGACATACGCGGTATGATATGAATATGATGGGCGGAATGTGGCTGTCACCTAGGAGT
ACGTAGCTCGCTTGGTCGCATGCCATGAGACATGAGCGGCGCGTGGTACGGTGGTTGCAG
GTGAGCACGAGCGGCGGGTCGCGGAAGGCGCCGACGGAGGCGAAGCTCAAGGTGGCGATC
AACGGGTTCGGGCGCATCGGGCGCAACTTCCTGCGGTGCTGGCACGGGCGCGGCGACAGC
TCGCCGCTGGAGGTGATCGCCATCAACGACACCGGAGGCGTGAAGCAGGCGTCCCACCTC
CTCAAGTACGACTCCACGCTGGGCATCTTCGACGCGGACGTCAAGCCCGTGGGCGACAAC
GCCATCTCCGTCGACGGCAAGGTGATCAAGGTCGTGTCCGACCGCAACCCCTCCAACCTG
CCGTGGGGCGAGATGGGCATCGACCTCGTCATCGAGGGCACCGGCGTCTTCGTCGACCGC
GCCGGCGCGGGCAAGCATCTCGAGGCCGGAGCCAAGAAGGTGCTCATCACCGCGCCCGGC
AAGGGCGACATCCCCACCTACGTCTGCGGCGTCAACGCCGACCTCTACACCCACGCCGAC
ACCATCATCAGCAACGCCTCATGCACCACCAACTGCCTCGCCCCCTTCGTCAAGGTCCTC
GACCAAAAGTTCGGTACGTGCCCGTCTCCCTCCCTCTCTCTCTCTCTCAACTGAATCAAC
TTGTTGACGATGACTAATGGCGGCGGTGGCAATGGCGCAGGCATCATCAAGGGAACCATG
ACCACAACCCACTCGTACACCGGCGACCAGAGGCTGCTCGACGCGAGCCACCGCGACCTG
CGCCGTGCCCGCGCCGCCGCCCTCAACATAGTGCCGACCTCCACCGGCGCGGCCAAGGCC
GTGGCGCTGGTGCTCCCCAACCTCAAGGGCAAGCTCAACGGGATCGCGCTCCGGGTGCCC
ACCCCCAACGTGTCCGTCGTCGACCTCGTGGTGCAGGTCTCCAAGAAGACCCTCGCCGAG
GAGGTGAACCAGGCGTTCCGCGACGCCGCCGCCAACGAGCTCAAGGGCATCCTCGACGTC
TGCGACGAGCCCCTCGTGTCCGTCGACTTCAGGTGCTCCGACGTCTCCTCCACCATCGAC
GCGTCGCTCAGCATGGTCATGGGAGACGACATGGTCAAGGTCATTGCATGGTACGACAAC
GAGTGGGGTTACTCCCAGAGGGTCGTCGACCTCGCCGACATCGTCGCCAACCAATGGAAG
TGAACGCCCCCCCACAGCGGCATTGCCCTGTCAAGTGACTCCTCTCGAAATTTTCCCCAG
CCGTCGTCACGGATGATCGATTCTTTGTAATGAGAATTCAAAGTATCGAGCTCCCAACAC
CTTCTTCCTTTTTCTTTCTTTTCTTCTTTTCTCTTTCTCTGATTTTTCAGTGTCCAGACA
CGGATTATAATAGGCTTCCTGCAAAGGAAGTCTCAACGCTGTGCATCTGTAATACTCGTA
TATACTACTATCGTTTGCCAGATTCTGATGTAGAATTCAACTCGCTCTTCGAACCGTTTG
AGCAATTTGACCTTTATTATTGCTATATCTAAACATGCATGATCAACTCAGAGACAAAGA
AAAGTTTGAACCATATACACGAAAGTTACCATAAAATAAAAGGTTTGAACTTCTGATGGC
AATTGCAAAATTTAAGGGAGCACAACCATGCAGCTCATTATCAGAGTTTCTCCGCTTTTT
TAAAAAAATATATCAAAGTTTCTCATTTTTTGCGAAACCTCATTATCAGAGTTATCCAAA
CAAATTGACCCACAAGATAAGAGATTGTGATCAGCGCGCTGAGCCTAGTTGGATGATCCA
AACAAATTGACCCACAAGATAAGAGATTGTGATCAGCGCGCTGAGCCTAGTTGGATGATC
CAAACAAATTGACCCACAAGATAAGAGATTGTGATCAGCGCGCTGAGCCTAGTTGGATGA
TGGCCTGAACTACTTAGAGAGTAGACCCAGCTTTTGTGAGTCGTATTTCGTTGGACATCA
TGGTTCACATGTTTGCCATCCTATATCCTTGCTGCCAATCGCAGTGTGTGAGTGGTCAAG
AATATATGGAACCCATGAGGGATAAGTATTGCAGACCATACAATGCACAGACCACAGAGG
GTGTCTTTCCACTCTGAAGCACTCATATGGATCAAAACATCTCGAATCTCTATACCCAAA
TGGCCCATGTTTGAAGATATTCAGAATTCAGAGTTGATCTCTCTCTACTCAATGCCCCAT
GACGACATATGCGGTCCTTATCGATGAAATAGCAAGTACTAAGAACCATTAAGTAAATTC
TAGAAGCTAACATGATATATTGAACTTCAACCAGAGTTCTTTGGATGACACTACATACGC
CAAGTGATAGTATTTTCAGGGGGAAAAAAAATCGCTACTCTAAAGGAAAATTCAGAGACA
GCACTAGTTTTTGCTTAAGGAAAATACATTCCCCAAACACTCCCTTGCAGAACATTTTTT
CTAGAATCACTCTAGCACTGAGATGTTACCCTCTCTGCTTCAGCCGCTGCCATTGAAAAG
GTTCCAATCATGGACATCAAAGTTCATCACTGCAAGCCTGAAGACCTCGGACATTGGCAT
GCATCCTGCTTGTTCTGCCGGTATGGCTGGTCCAGCTGCAACTGCCTGGGCACTTTCACT
CAAAGGACTGAAATAAAAATGACAGAAAAATATATCATTCAAGGGGCGGCCTGTAACATT
GGAGAAGTGGGAAGCACAAACATAATACCCAGGCTTAAAATAAAGGCATCAATAGCCTAG
CTAGTCGTTAATTTGGATATGTAAGTCCATACTAATTTTACTTGCTTTCACTAAGATGTA
ATACGACTATCTCCACATTACTTGTGATGCATCGTTATACTGTTTCATCTGCATTTTAGC
TGAAACATATAATCTAGTTTCGGCATTTTGGTCTCCCCGTAGTACTACTGCCACCCGGCA
GTCTCGGGGGGAGGGGCAAATTATCAAATTGAGAAGTAAAGTGGGGCAAAAGATCCAATT
TCTCTAGTACTATTATAGCATTCAACATGACTAGCCTAGGTAGAAAACTGAAGGAACTAC
ATGAGGACCTGAGCACAACAGGCTTCTGTTTCATCAACCGAGAAGTGTTTTTTTTTTTTC
AGTTTAGTTCTGCCCTTGGCCATACTACTACGATAATACAACTTTATTCAACATGTGTAG
CCTAGATAAAGAACTAAAAAAAATATTCAGCAGGGCAGGATTGTCGTTCTGTATTAC