morexGenes - Barley RNA-seq Database

Contig contig_274800
Source Contig contig_274800
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_274800 (6019 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_274800

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44484	3	3221 bp	MLOC_44484.1	Available	Available	LOC_Os01g10010.2, FRAME:+1, EVALUE:5e-66, 13101.m14932 protein prenylated rab acceptor, putative, expressed
CDS Structure of MLOC_44484

Contig Sequence (6019 bp)

>contig_274800 6019 assembly3_WGSMorex_rbca.fasta
TACTTATGCACTTTACTTTGTGATAATCATATTGTTTCTTGTTATATATCTTGCTATCAC
TTAGTTGTTTACCTTGATTAACATAAGTTGTTGGTGAACATAGGTGGTCCTAATTGTTTT
AGGTTCTGTGCTTGACTAATTAAACGTTATTTTTATTTCGTATTTATTTCAAGCCCAAAC
CGTAATTATTTTAGAGCACATATTCACCCCCTCTAGGTGACATCCACGTTCTCTCAACTC
ACCAATGATCCATTCCCATTATATTGTACCGTCACGAGATGTCAGCATCCTAGTAGAAGG
ATGCTTTTTCTTGTTAGAAATAAGGAGGCACTTGCTTGGATACGACTATGAAACCTATTA
CGTACCTTGATGTGAGTCTCTCCTTGTATATTATTCTCATTGTCGGACATGTCACAAAAG
ATAAGAGACATTTTTACACCTCTCCTGTTTACCAGGTGTCTATTTTTGTTCAATGCGAGT
CTATTCAACGATATCCTGAGGTCGAAGAAGACAACAAGCGAAACAAGGCACGATGACTAT
GGTGAGGCTTGGAGCGGTCCCACGTATAGGGAGATGCGAGGGTTGACTCGTTCATGTGTT
GGGGGTCTAGAGTGCTAATGCACATGAATTAAGATAAACGGTAAACAAAGTTAAAGCATT
GTTTTTATAACAAATATGGTTTAATGTTGTACTCATTTAAATGGATTCATGAAGGAATGA
CTTGTGCTACTCCCCCGTCACAGTTTAGAAGAAGCGATTTTATTTACATGCATTTCTAGA
ATAGAAGAGGATTAAAACGTGCAACATTTACTGCTTAGTTAATTAGGAGTATTAGTAGAC
TGCATGCATAGTGAAAACGCTGGGTGTGCAAGTTGGATGGAAAGGCTTCATGAATGAGGA
CTCCTCGTTTAATGGTTATGTGGGTTATTGCGCATTATCTTTTCAAATAATTAGGCGCCT
TGGAGGTTACTGCATGAGCGCTTGCAAAAAAAAACTAGAACTAATCATGATTCACCTTGG
TCCGAGAGATCGCTCATGTGCGCCTTCTAAACTATGACGAAGGGAGCATTTTAGAAAGAA
AAATACTATAAAAGATAGTATTCATGTTTTTTGTACTTGCAATTTATTTTGCACTGAAGT
CTATGAAGGTCCTTTTTGTTAAATTTTACACATGAGTATTAGTACCATGATGTTCGCTTT
AAGAAGTTTCATACCCCCTCCGTCCAGAAATACTTATCGAAGGAATGGATGTATCTAGAT
GTATTTTACTTCTAGATACATTCATTATTATCCATTTTTATGACAAGTAATTTTGAATGG
AGGGAATATTTTTTAACTAAAGCGATGGATTGACACTCATATTTAAAAAATTGGCATAGA
CGGAAAGAATTATTCGTTTCCCCATGTGAGATCACATCTGACTTCCTCCTTCACGAGCGA
CTCCTCCTAAGACGAGGGTTTCATGGCCTTTCGTCGGTGTCGTCATCGATCCACCTCGTC
TTCATGGCCTTAGGGGCATGGAGGTGTGGTGGATCTCGGCCCTCTTGCTGGGAGGGCTAT
CGCTTCACTTTTAGTTTTTTTATAAGGTTGATTAGGGTTTGTATCCTGCACAGGAAGGTG
CAACGCCCCCTCCCCGTCTAGTCCTTGTCCCGGCAATGCAACCAACATCGTCGGAAGGCG
TGTCTCTAGTGGATCTCATGAGATTCGAACGGTGCTGATCTTCGATGTATCTCCATGGAT
CTAGTCTTGATTCGTCTGCATACGTGTATCTACAGGTTGAATTATTTCCATCTACTCTTT
TCTTCATACGTGTCGATTGCTATTCTGGTGTGCGGGTCATGTGGGGCCTCAGCATAACGA
CTTTCCGAATGTTTATACAATAAGGGCTACTTTGATTCAAAGGAATTGCATAGGAGTTTT
AGAGGATTTGGATCTTTAGAATTTTTTTATGGTCGTTTGATTCATAGAATTAACATATTT
AGAATTTTTTTCATAGGATCCATTTATACTACTACATTTTGAAAATAAAAACCATCCACT
CAAACCATTTTAAAAATTATTTTATTTTTCCTGCGCTATCAAACATTCTTCTAAATCCTA
TAGAATAATAATATAGGACATGCCATTATACTTCTGTATTTTTTCAATTTCTTCATTCTG
AGAACTTCCTGAATCAAAGATGCCCTAAGTTTTGCTCTCCTCGGGCAAAGGAGGGGCAAT
GGTGACAATGCATCTTGTTCTATGTACAACCATAAAAAACAAAAGTTTTCCAGAGAAATT
GCCAGAAATCGGCACCGGTAGCGATGATAACATTTTGTTCCATATACGGCGGTGAAATTG
GGGAAAATCTCGAATTTACAAAACGTGGCCTGTCGCCGTCCAGAATGCCCTGGAAATTCA
CGTCGCCATGTCGTGTTACGGGAAGGCATCCAGCACGGCAGCGTTCCCCACCCTCGCGTC
GCATCCCAATTCGTTAATCCCATCGCCTTCCCCGATCCCTCTCGAGTCTCCTCCCCTCCG
CTCCCCCGTCCCCTCCCCCCTTCCTCCTCTCGGATCCGCCACCCCGCGGCCCGCCCCTCG
CCGCCGGCGACCATGTCCAAGTACGGCACCATCCCCACCTCATCCTCCTCCGCCGCGGGG
GCGGCTCACCTCGGCGGCGCCTCCCCGCTCGACTTCATCTCCCGCGCCAAGGCCCGCGGC
GCGACGGCGCTGGCCACCCGCCGGCCGTGGCGCGAGCTCGCGGACGTGCACGCCATCGGG
CTGCCCCCGAGCCTCGGCGACGCCTACCTGCGCGTGCGCGCCAACCTCGCCCACTTCGCC
ATGAACTACGCCATCGTCGTCCTCGTCGTCGTCTTCCTCTCCCTCCTCTGGCAGCCCATC
TCCCTCATCGTCTTCCTCGTGTGTATGGTCGGCTGGCTCGTCCTCTACTTCCTCCGCGAC
GAGCCTGTCGTCCTCTTCGGCCGCGTCGTCGGCGACGGCGTGGTCCTCGCCGTGCTCGCT
GTTGTCACGCTCATCCTGCTGCTGCTCACCGGCGCGACCACCAACATCCTCACATCGCTG
CTCATCGGCTTCGTGCTCGTCGTGGTGCACGCCGCTCTGCACAAGGCGGAGGACAACGTC
GACGATGAGGTCGGCCGCTGGTACGCGCCAGTGCCAGCGCAGCCGTCTCACTAGTGTGAG
ATTGCTCGCCCTCCAACTCTTGGTTCGTGGCTCGTCCATATTATTGTTCAGTGCCGTGTA
TGCATTTCTGTTCTTCCTACTGCTAGATGGTGTACAATTTGTCAATGTGTGCTTGCTGTG
CTATTGTCGTTCCTGAACATGAATGCAAGTGGTGATGCTTTGTGTACTCATATTTTCCCG
AATTTTACCTGTGTAGTTCATAGATATGAGCAGCTGAGTGTGCAATTGGGTCTCAAACAA
TCTCACGGTCATGCTACATGTTTGGTTTGTTTGTCATATAAATTACCTGGTCAAGGAGAT
CCCTTTCTGTTCCATGGATAATTGAGATATTGCCTTTACAAAGTGAGATTGAGACGTCTT
GCAGTTCCAGAAGTCCCTTACACTTCATTGTACCTGACTTTTCACTAACTTGTAAAAAAG
AAGAAAAGAGATATCTAAATGGCGGCTGGTCTAAAATATCTCTAAATGTATCTGCTAGCT
CTGCCAGAATTTCATAAATGGTTCAGTGAATGTAATTTGATTGACAGAGTTTGCGGTATG
GCAAGCAGTTGTCACTATCAGGCTGCCCAATCTGATAAAATAGTTTTAGCAATCTTATCG
TCTCTTTACACCCTGTAACCATAGTGTAGCTCCCTGTTTATAGTTGCGGATCGTGTATCT
ATGTGCTTGTTTTTTATGGAGGGCAGAATCATTGGAAGTGCCAGCCAGAAGAAGACGGAT
GTATGCAATTTGAAAATGGTCCGAGAGACAACCCTGGCCTGACAGGCCCTACACTAAGAG
TCGTCTGGAAGTAGTGGGAGGCAATTCCTTGCCCACTGCTCTTCCCACAAGGGAGGTACA
GCTAACTAGCAATTGAATTGAATTAGCTTAGCTGTTTGTTGGGTGCAGAGTATTAATTTT
TTGAAATCTCAAGAATCTAAGTTTTAGAGCTCAATCATCAGCCGGTCAGGAAGCATTTCT
GCGGTAGTTAGTTATACCACACTTCAGAAGCGTCTGTATTTTGCAGTTTCTTTTTTTAGT
TGCTATGTATTCTTTCTAGACTTAGTAACCATCCTTGTGATTTAATAGAGGAACAATTTT
CTGTATTTACAGTTTTACTCTTTTACTTAGTTTGATGTCGACGTGAGTAAATTATTTCTC
TTATTTCTCAAGGTTTTTTTTTTCAGTTGGTGACTGTTAGTGTGATTTAAATGAGATAGA
GAGTAGTTCCTTTCTTTGACATCTATCTGGTTGTTTGTCAGGTCTGGCAATTAGCATTCC
ATTTGCGCCATGGTGTCATGACCATTCTTCGCATTCTGGTTGCAATTTACAATTAGTGTA
TGCATTATTATTATTCTATATAACTTGAGCTCGACAATATTATGTTACCAAACTACTCAT
GAGATTGAAACGTTAAATTCTTGTGCTCATCAGTTGGATTTGATGTTGTTGAATATTGAT
GCTAAAAGTTCATGAATGTGAAGGCAGCAATTCGCGTCAATGTAAAAAAGAACAATCTCA
TCCGTATGTAGGAATTTGTGCTGAATAATTTTACCATTTATTGCATCATTTAGTTACGGG
CCAGTAGCTGCCTTGTTTTTAGAAGTGACACTAGATTGTGTGCAACTTGTTTGATTGTGC
ACCTATCAGGGTGATTTAGAAGTTCACTCAGGCAAACTCTCTAAGACAAGACTTCTAAAG
GGAGCCAAATGAGCAATAATCGTAATTTTGGGATGCATAATGGCCTTCAAGGGAGTTCTG
GAAACAGAGCAAAATAAGCACCAATGTTAAAACACACAATGGTGTGCAGTTTTGTTTTGA
TATGCTAATTTTCTCGTGTGTGTAGCCTATGTGAATACTGACTGAGATACCCGCCTTTTG
TTCTTTGCAGGGCCTGAGTGTGCTCGATTCTCCTTGTGTCCTCCCTTCGTTCTCAAGTAT
TCTGTGAGTGTAAGTTTAGCATTGGTATATGGTCTCGGCCCAGTCAGGATGAACAAGAAC
TTGTAGCTGGTGGTTGGTCTTGCGCACGACACTGGTTCATCAGAAGCTTTTGATCCAGTA
ATGATGGACGGCTGTAAACTTTGGTCGTTGCGTACAGTTCAAAGATTCCCCCTTCTTTAC
ATGTACGTACCAATTATGGGAGACAACGAATCTACACTCTGAAGTGTGAGAATTTAGCTG
GCAGGGGCCCTCTGTGAGGCTGGTATACATTACTTCGTGCTGGCAATTTCTGATTTGCTC
ACGTGGTTTCATCTTGTATACACACGGTTTTGTTTGAAGGAGATTGTCCGTTCGGTGCCA
ATTAGCTGCGAGGCTACTATCTGTCGGACTTCTTGGGAAGTCTATGTAGGAATTGTTTTA
CTTTCTTCATCTTATTTACTACTTCCTCCATAAAAAAGTTTTTTTTTTTTACTGGAGGGA
GTGGTATCTTCTGAAACATAGGATATCATTGATCTGTTCTTTATATGTTCCATTTTATCT
GCGCTCTCCTGCATCGGCATGTACTTATGCCTCACAAAGGCCCAACGCTCCAGTGGGTGA
GACACACGTGCAAAACAACAAAATTGATCCGTTTTGAAAACTTCAGCACAAAACTTCAAC
ACAAGTTGACTTTGGGGAGTCTCCCCACCTCCTTCTTTAATGAATGATACACACACTTGT
GCGTATTCGAAAAAGCACCAAATGACCTGGCTTGAAAATATTTTGCGTTGTGCCCTTGTC
AAGACTGAGTTCATCGTGTCTGGTCGGGGACATACGTCAAGATAGGAATGGGCTGTCCGG
ACCTGGCCCCTTCGAAAAAGCACCAAATGACCTGGCTTGAAAATATTTTGCGCTGTGCCC
TTGTCAAGACTGAGTTCAT