Map Locations of contig_274755 (9749 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_274755

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44450 2 3017 bp AK374070 Available Available None
MLOC_44452 3 3150 bp AK358592 Available Available None
MLOC_44451 1 215 bp None Available Available None





CDS Structure of MLOC_44450






CDS Structure of MLOC_44452






CDS Structure of MLOC_44451






Contig Sequence (9749 bp)

>contig_274755 9749 assembly3_WGSMorex_rbca.fasta
ATCTTGTTTGACCGAAAAATGAGGTTGAAAAGCTTAGTTAGCCCAACGACAAAAAGAAAG
AAATTTTAGTGGGGACTCGGGGAGGAATTTATAAGCAGTTCATGGCCACGTTTTGTTTTC
CTTTCTTGCTTCTATGGTAAAGTCTGTTTCACGAATTCATATTCATAAGTTATTCTGTGT
ACGGTCATTACTTTGAAGTGTCAGCATCCATCTGAGATGTTCCCAACAAATAGAAACCAC
CATTCACCAGTTCCTTGTAGACATGTTAAAATTTGTAATGCTCTACAATGTCCTTCCACT
TTTTCTGATGATGCAAAACAGTGCAAGAGACTTTATTCCTAAGGGCAATCCTACATTTTT
ATTAGGAGTCCCCAAAATAGGCACATCAATTCTTCTACTAGTAATTAAGTTCCAGAAAAT
ATTGGTATTATACCCTGTTATTACTTATTACTATGACTTCTACTGTTGGAGTGTGGGTTA
TGATTTGCCGAATTTTTTCCCCTGTGAATACGAACCGTTTACGTGTAAATTTTAGTTCAC
ATTTAATGAAAGCAATTCATCTTTGCAGGGCTTATGAGCACATTGTTCTTGTCCACTATA
GAGACGTTCTAGAGGTTTGTCTCTTGCTTTATCTTCCTTCTGTCACAACATATCTTCAAT
TCTGATGCTTAACCAACTGGGATGAGTGAAAGAATAACATTGGTTTACTACCCGCAGTTA
TCTATTCACTCTGAGGCATAGCACCAGTGAAATTGAACTTGACATTGTGTAGGCTTGCAT
TGATTAACTCACCTATTAAGCTAGTGCATATTATTATAGTGACTTCAGTCACCACATTTG
GCATGTCCTGTGCTTAACCTTTGTTTGTGGATTGATTGTCAGGGCAGCATTTCAGTATCA
GTGCTAAACGGTTCGCCAACCTCCAACCAGAATGGCAGTGCTAGCAGAGCTGATGCACAT
AGTTCGCCAGGGTTGACTAGTGAGATAATTGCGCCACTTCTCAACTCGTACAGCCCAGGA
TCTGCGGAAGAAGTTAGTTCCCAGATCCCGACCATAAACAATGAAACAAATGATATAAGT
CTATTTGATTGGCGGCGGACGCTTGAAATGCAGCTGAGTCTGGAAAACAAGGAGCGTCAT
GATGTTAACACTGATGAGGTTCTGCCAAATCATGATCCTATCCATGTGCATGGGATTCAG
AATGAAGAATTAGACGCATGTATAAACCTTGCAGATGTCTTTGAACTGGACCATGCTGAA
GGAAGCCATCCTTATCCCGATCCTATCGATGATGCCCTCATATATTCAGGTGCTCTACCC
TAGTACTAGCGGACACCATGCATTTGATTCTTTCATTGGTAATTACTGCCTGGGTGGCTG
GGTTAACATGGGCAAACTTTCTGAAAATTTGCATTTTTCCATGTATGTCTTCTCTTGATC
AGGAACATGCTGGGACTGGGAGGATGACCAACTTAATTCTATTCTACATCCAGCTTCTGT
GACAGTTGATGAAAACCGAAGGTTTCATATTCATGATGTTTCTCCAGAATGGGCATTTTG
TTCTGAAAGTGCAAAGGTATCACCTGGAGCAGAAAATAATATCTTTAATTGAACAAGTTG
TTCTTGTGAGTTGAATAATCCATCTTCGTTGTTCTGCTCTATTGATAAGATGTGGAACCA
TCTGGACATATTGGCACATGGGATTTACATTGACATATATGCTATAATCATGAGAGTGTC
CATGATCTCTTAGTTCATCTATTGCCTTGTTGACAAAAATGTTAACCATTAGGGAAATTC
TTTTTTCAAGTCAATTTCTGCCATGAACTTACAATAATTAACTGGAGACTATATAATTGT
AATGCAGGTTGTCATTGCAGGGGACTTCCCTTCCAACCCCTCCAATAGTTCATGGGTACT
ATTTGGTGATTTTAAGGTACCTGTGGAAATTGTCCAGGAAGGTGTCATCCGTTGTTATAC
TCCACACCTTGGTGCTGGGAAGGTGAGAATGTGCATGCTCGATGAGAATGGGAAACCTTG
CAGTGAAGATCGAGAATTTGAATTCGTTGAAAAGCCTACCAGCACAACGATTAATGGGAA
CGGGAAACCCAGCAGTGAAGCACGAGAATTTGAATTCCAACAGTGGCCTACCAAAAGTGA
CGATGAGCTGTTGTTGCTTCTCAACTATGTGCAGATGCTTTTTTGTAGTCATGGCTGTGA
ACTCTTCTCAAAGTTCAGGTTGCCACTCCCAAATGTTCAGTTTGGTTTCCCAGTTAACCC
CTCAGAGATTATAGGGAGAACATGTGAGCAGCTGGACCGTGAGAACACTGTAAATTGCAT
CATGGAAGTGGTGCTTAACAATAAGTTCAAGGACTGGCTATCATCCAAATTTGAACAGAA
TAGTGAAGGGGAGTATTTGCTTCCTAAGCAATACCATGGTGTTATACATACAATTGCTGC
ATTGGGATACGACTGGGCTTTGGAACCGCTGCTTAGTTCCGGTGTGCCTATAAACTTCCG
TGATGCAAATGGGTGGACTGCTCTGCATTGGGCTGCACGATTCGGAAGGTATTGATGATC
TATTCATTGCATGCAAAGATATATCCAAACTAGTTTCATAAGCTTCCCTGTTCTTGCACC
AAATGCAGATGTAATATAGGCAATTTATCTGTTTCCTAGCTTCATCTAATATGGATTTCC
TCCTGACTCTGACCCCAATATGAAATGACAGGAAACAAATGGTAGCGGTTCTTCTTACTG
CAGGCGCTGCTGTAGGTGCACTTTCAGACCCAACAGCAGAAGATCCTGCTGCCAAGACAC
CTGCTTCGATAGCGTATACATATGGTTTCAAGGGCCTCTCTGCATTTCTTTCAGAAGCAG
AACTAACCAGTACCCTTCATTCTCTGGAATCAAAAGAAAATGGAAATCTCGTAGATCACA
ATGGTGGAGTGAGTATATCTAGCGCTGTGGATAGAATATCAGATAAATGCGCACATGTGG
ATGGTGGAACTGATGATCAGCTTGCACTTAAGGATTCTCTAGGAGCTATCCGAAATGCTG
TTCAAGCTGCCGGACGCATACAAGCTACCTTCCGTGTGTTTTCCTTAGAAAAGAAGAAAC
AAAAGGCTCTTCAAAATGGGGATAGCTCTGCTTCACCTTCTATTATCGCAAGAGCTGCAT
TATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGTAAGGAATTTCAGAGAATTCGGA
AAAATGTCATCAAGATCCAGGTAAGTTCAGTTCTGCATATCATGCGCAGAATGATTATTT
GATCTGTACTAGTGCATTCTTAACAAATGCTTGAGGATTTTGTTCAGCCGATAAGCCAGA
CCACCTGTTTATTCTGATAGGCACGGTTCAGAGCTCACCGAGAAAGAAATAAGTACAAGG
AATTACTTCAGAGCGTCGGCATCCTTGAGAAGATCATGCTAAGGTGGTTCCGAAAAGGCG
TTGGTCTGCGAGGCATCAGTAGCAGGGCGATGCCAATCGACCAAGACGAGGAAGAAGACA
TCGTGAGGGTTTTCCGCAAGGAAAGAGTGGAAACAGCTGTCAGCGAAGCTGTTTCGAGGG
TATCAGCTATCGTCGGCTGCCCTGTCGCAAGGCTGGACTACCGCAAGATGCTCGAAATAC
ACCAACAAGCAAAGGTGAGGCCATGATCTGTGGAATGTACCGAAGTCGTTTCAGCCAAAA
ACTTGCATAAGCCATCCTGCTATATAAGTAGTACATCTATATGTAGTCCGTAGTGGAATC
TCTAAAGACTTACATTTAGGAAAAAAGGAAGTAGCACTTTGTGCATGGAAATCGCAACTT
GTTTATTCTCTTGAGCTTGATAAAATTGTTTTCCCATCACACAGGTTGGCCATGGAAAGT
AGCTGATCTGGTAGCAGCCGATGCTGATGACAGAGCACAGGGCAGCCACTACCCTGTGTC
CTCCTCCTCCCCTGTTAAATGATGATCTGGAAAGCAGCTGGCGGCCTGAAGGACAGTAAA
AGCCTTGGTGAGTAGTGGATCCTGCCAAATCACAAGGACTTACCAACAAATTCCAGTACC
ATCACCAAAGTCCATGATGAACCTTTTTTTTTCCACTTCTCTGTACATAAAATTAAAAAA
CCCATGTGCATAAGCTGACTTGTGGCCAGACTTTAGGAAGATGTAAGGCCTATGTATGAT
AATGGAGCCTCAGGGGCTTTAAGTACCATCTGCTTTGTAGTATGTAGTACCATCTCTCTC
ACATTTGCTAGGCGTGTACATGGCAATAAATGTCATGGTAAATCCTGAGCCGTAGCTCAA
TTGTCAATGGGAAGCATGATGGTGCCTTTGGAAGTTTGTATGTGGTACTCCATCTATCAT
ACTATTTCCTTGGCTAGGACAAGATGATAAATGTATGGCGAACCCTGAAGCTGAGATCAG
ATGTAAATGATAAATGGCAAGTACTCACATCTTGTGCACATGCAAAGCATAAATGGACAT
CGGCCAAATTCACACTTCTTTGGTTTGCCATGATTCTGATGTGAAGAAATTCAACCAAAG
CACAAGATATCATATGATCCTGGTGCAGGCCTGCAAGGCACAAGGCAGCAATAATGCTCC
GGCAGCATTCTGGGCTTCCCTTTGGCTCTTCTATTTTTGCAGTACTAGCAGTAAATCAGA
TTCTATGGGATCCTGTTTGAAATGCGAAAAGAAAACTTGTTCCTGTGGGAAATGAAGCGA
TTCCTGCGAAGTTCATGTGTTCCAAGCAGAGACCCCCAAGATATCGACGTGGCCATATTT
ATTTTCTTTCTTTTTGATGGAAGGTGGTTGAATCTGCCCATTTCATATTCAAATAAACCT
GTTCCCGTGAGAAATGAACGTACTACTGCAAAATTCGTGTTCCGAGGATCGACACAATCA
TAGTTTTTCGCTTCCTTTCCGATGGAAGGTGGTTGAATCCGCCGGTTTCATTGACAAAAC
AGCACCAGCACAACCATGGAGAAAGTGATCATATTATGTCAATGGAGACCGGTAAGCACC
GGGGACAAGCACAAGGCGACCCCGGGGCAAGTAAACAGAGGATTACACCATTGCAACCAC
CAGGATTAGTTTAGCTGCCATCACAAGAAAGTTCGTCAGTTTGGAGACCTTGGGGTGGGG
ACGTTTTCTAGACATAATGCAGCAGTTAGGTGTCATGACAGTGGCCCGGACCACGTACTA
AACAAGGGTTTAGCCATGGGCGAGTGACATCAGGCAAAAGCCGTTTTCATTGGACGGAGA
CGCCGCAAAAGCCGCCACCACCAACAGGCAGCGCTCAGTATGATATGCATGTATATTAGC
TGGGAAGAGAAGAGAAGCCAACCAACAGCAGGAGAGGCTTCAGGAGGTTGAGGGCCTGAT
AGTGATAGGGACAGGAAAGAAGAAGAAAAGGAAGGCTTCAGCTTTGAATGTGTGATGGCT
TACAGCTTGGGACACACCGCGCAAAAAAACACATTCAAATGCACAAAAGGGAAATTCCTG
CACAAACCACCAAACACCTCACTATGTACACCCATGCGATTCCCCGGGAAGAAGGAAAAA
AGGAAAGGAAAAAACTTTCTCTCCCTACATTTTACATTTACATTACAAAGGCGGAGGACG
TCGGTCGAACCGGAACCTGCGGCTAGCGTATGCGGTTGGCGGCCTTTTTTTCACGCGAAC
CATCTCCAGGAAGTTGCTCAACAAAATGCCGCATCGTGCATCTGCATCCCTGTTTCAAGA
GCTTCACACCTTTTTTCTTTGCCTCTTGGTGGGATGGTGTACCAAGAAGAAACAGAGCCT
GGGTGGCTCCATCTCCAGGTATTTTTTCAAAGCTCGTACCTGGAAGAATAAGAAAAATCA
TGACATTAGACCTGAAGGATTCTATCATTCCACGGGTATATAATATAATGAGCTCGGAGA
TCTCAAAATCAGAGCTTGCTTTAAGAAATTGCCATGGTTCTTTAGAACCAAACCACCACA
AATAAACTTCGGTAAAAAGGCTCGCTAAGAATTGCTTTAAGCTTTATAGACCTTAATAAG
TGCATATCGAATCTTCTTTTGCCTAGCAGTGCTATTTTGATTCTTAAGTAAGAAAGAAAC
ATGGAGGAGGGGAGTAAATTGCAAGAGGAGCTTACTCTTGGGAGCACTGCAGCTTCAACA
AACTCCTCCGCGCCATGCCATGAGCTGTGTCGCGACATCCTCTGCTAATTTACACTCCAT
ATAGACCTACCTACTGAACATGGTCATGATTTTGGAAAAATCGAGTTACTTCTCTGTACA
ACTGCTCCCCTTCAAATGGCTTGGAGACATAGCCATCCATTTCACATTTCAAACAGTGCT
CATATGTTGCCTGGATAACGTCTGCTGTCATTGCCAGTATCGGAGTTCGCCACCTCCTAA
CGTTAGCACATTCTGGTGGAGCCTCTCCGCGTTCTACCCGCTCATTTAGCTCTCTTTCCA
TCATTCTGATTCTCTTGGTGGCTTCAAACCTGAAAAAAATGCATGATAAAACTTCAGTAA
TTGTGATTGACAGATTAAACTCAAAGGAAATAGCGAGCAACCACTTCAAGACTCACCCAT
CCATTTCTGGCATTTGTATGTCCATGAAACAAGCATCAAAACTGTGAGGTGGTTTTAGCA
ATGCAATTGCTTTCTTCCCACTGTCTGCGCAAATTACTTCTGCCCCGTACTTCTTGAGAG
CACCAGCAGCCACTTTAAGGTTCACAGCGTTGTCGTCAACCACAATGATTTTCCTCTTGT
GAAGAAGGCTACCCAACGCTGAGTTGCCAACCAGTCCATTCTTGACATGCGCCTTATCTA
CTCCACCCAAAACCCGCCTTAGTGAGGCCTCAAGCATACTTGCACGAAGCGGCTTCATGA
TTACATTCAAGTTATGCTCCCTGGATATATTTGAACTGCTCTTGATAGAATTCGTAGGGT
TCTCCAAAAGAAAGACCTTCGGAGGGTCTGACTGATCTTTGCTCCGCAATTTGCTAAGCA
ATTGAGGCATTGAATGGGATTCCTTAAGCCAGGTCTCCTTGTCAACTAGCACTAGCCTTG
TAACTAGTGATGCGCAGTTCATCTTAGGAATAACCTGGCTTACATCATTGGTCAATTCCG
TTTTGACTCCAAGCCTTTGTAAATGATACTTGGTAACATTGGCACGAACCGGCCTATGAT
CAACTACCAATGCACTGACCCCTTTAAACCCTGGTGATTTGTTGACATTTGCATTGGGGC
GTGCCCTCGAAAGTACTGCAGTGAAGGAGAACGTAGAACCAACATGGTGTTTGCTTACAA
ACCCAATCTCCCCCTTCATGAGATGAACCAGGCACTTGCTGATGCTCAATCCGATGCCAG
TGCCCCCATGGATGCGGGCAATGGACGGACCAACCTGCATGAAAGGCGTGAATATGCGGG
ATTGGGCTTCAAGCGGGATGCCGACACCAGTATCTTCAACTGATATTATCAATCTTATCG
TTTCAGGCATGATGGGAGCAAAGGGCAACTCGGACGAGTGTAGATCCATATTGAAAAGTC
GGAAGCTCTGCCAACTAAGCCTTCTTTTAGCTACTTCGCAGCCACTTAAGGTGTTGTATG
TGTTTTGAATTTCCGTTTCCACATCTAAAGAACACATCACCTCTTCGACAACATGAACCG
TCAAATAGATATGTCCTCTTTCTGTAAACTGTGAAAAAACATAAATTGTCAGCCAGCAAG
TAACAGAGCACATATAAATCATAAATATTTATAATAAAATGCTTCGTATTTCTATTTGTG
CTATTCATGTATATTAGTTATCTTACTTTTATGGAGTTTCCCATGAGATTTGTAATGATT
TGCCTCATTCTATTCGGATCGCCAATAAGTGTTTGTGGAACTTGATCAGAGACATACACT
GCCAACTGCGCACGTCATATGTAAAGACAAAACCATGAAAATGGAAAATGATTAGTGCAT
TCAACAAAATACACCGAAACTGCACCGGAAGAATCCACTCTAGAATTACCTCCAGCCCTT
TCTCCTGAGCTTTTCCACAGAAGAGAGACAAGATGTCATCACAGACTAGTCTAACATCAA
GGGGCACTGCATCAAGCTCGAGTTTGCCAGATTCTATCTTCGCCTGATCAAGAACCTCGT
TTATGAGGGACACTAAAGCTTTTCCACTGGCTTGGGCTGTTCTAACATAGTCTTGCTGAG
TTGTGTCCAGATCAGTATCCATGAGCATTTGGAGCATTCCTGAAAGAAGTAGTAATTTTT
TAAATCCCTTCAGTCGAAAAACAATGGAGAATACATTACGGATTAGATCAATTACACACT
CACCTAAAACCCCATTCATTGGAGTTCTGATCTCATGTGAAACCGTAGCAAGGAACTGCA
AACAAGCAAAAAAAAAAAAAGGGCACGGAATGACATTTTTTTTCACCTCGACAAGACAGT
ATAGGTTGTGCAGTGAGATTAGTAACCTGTGACTTGGCAACATCTGCAGCTTCCGCGCGC
TTCTTGAGATCCTTCATAATTTGAAGATCGTCTTCAACTTTCGCGATACGGTGCACAGTA
GCATAGATTATATAGCCAATGAGCAAAAATATCACATAAATCCCTAAGGATGATGTAATT
GCAAGCCATGGCAACGGTGGCTTTTGCATGAACCTGTTGAAGAGGAATATGTCACATTAA
CGGTTGTTGCGTAGAGAAAAGGGGGCTGCAGGAGTGATAGGAAAGGGAGAGCGACAAATC
AATCACCTGCAATGCATCTCATGCCGTCTAGATGGATCGCCAAAGTTGAGCGTGCTGTTA
TGGTACATCCCACCGCCCGTATCGTTCGAACCGTACATACTGATGGGCTTCTCTTTAGTG
GTAGTATCATACACGTTCACCATGATGGATTGCTTCCCCGCGAGCTGATGGAGCAGCTTA
TCGACAAGCGCTTCTATATCAAATATGCCACCGAGATAGCTGCTTGGCAGCAAAAGCAGC
CAGTTAGAGACTCTGCTGCACAACATATGGCTGGAACAGGAGGGACGGTCATGTGTTGTA
GGGCTTCTTACCCCACGGCGGCTTGGATGCGCTCCTGCGGCCTCGCATTCGCGGGGGGCT
CGGACTTGTACACGGAGTATGTCAAGATCACCCCGAGGCGGCCGTTGAGCAGCTGGAAAG
GAGCGGTCAGAACACCCTTCCCGGATTCTCTAGCCCGTATGATGTTCTCGCGATCATCCT
GCACTTGTTCAGCATGAAGCAAATGTTCCTCATCGAAGTAGAAGAATGCCAAGATACTAG
CAGGTGTGAGTTGGTAAGAAAAAAATGATTCACTGTTGGTAGGAGTAAAAACGCCGGCAG
CGGCGCTGGGTGAGCTGAGCTGAGCTGTAAAATCACATGCCGAGCACCCACAGCTGCAGT
CCGCTTTATACGGCCGCCCGGCCCTAGTAGTAGCTAGGCTAAAAAGGATAAATCTAGCTT
GACAGTGGGGGAAAAAACGAAACCACCGAGATTTTTGTATGCGAGAGAAGAGCAAAGCAG
GGAGGGAGGGAGGGAATGGTCACGCACGGCGCCGGAGAGCATGTCGAAGGAGATGACGTT
CTTGTAGGCGTCCTGCGCGAAGATGACGGGGGCGTACTCGTCGGCCGGGCCGCGGATCTC
CGCGACGGCGGCGTCGCCGGGCCCCTGCGAGCTCGGGGAGGAGTACATCTTCTTGATGCT
CCACCCCTGCTGCCGCTCGAACTGGTCCC