morexGenes - Barley RNA-seq Database

Contig contig_274739

Source Contig contig_274739

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_274739 (7302 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_274739

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44433	8	3691 bp	MLOC_44433.3	Available	Available	LOC_Os04g26834.1, FRAME:-1, EVALUE:3e-119, 13104.m02538 protein eukaryotic aspartyl protease domain containing protein, expressed
MLOC_44432	1	2029 bp	MLOC_44432.1	Available	Available	None
MLOC_44431	1	135 bp	MLOC_44431.1	Available	Available	None

CDS Structure of MLOC_44433

CDS Structure of MLOC_44432

CDS Structure of MLOC_44431

Contig Sequence (7302 bp)

>contig_274739 7302 assembly3_WGSMorex_rbca.fasta
GGACCGCATCTTGGTCGTTACACTCTGGTATGGTATATAAGTCGATGGGGCAGGCTCGTA
GAGACAAGACAACAATCTTTCGGTACTTTGTACCCTAGGCACACTCCATCGCAATAAAGC
ACAAAGCAGAATGTAGGGTTTTATCTCTTATAGTCAACGGTTTCAACCTGACAAGGGTCC
TTATAGATGACGACGGTAATTTCAATCTCATGTCAAGGTCCTGATAGACGACGACAACAA
TCCCAATCTCATCTACACGAAAACACTAAAAAAATGCAGTTCAACTCATCGTGCGTTCAG
CCCAGTAAAACCAAATTCAAGGGTATCATCACGGTCATGGAGGCTCAATGCATGGGAGGG
TCACACACTACATGGTGTCCGGGACTCCCAACAACTATCATCTTGAAGGTTTGAGCTTTG
ACATAGTCCCTTTTCAAAGCGGTTACCACGTACAACTATCGTCTTGAAGCTTTGAGCTTT
GACATAGTCCCTTTCCAAAGCGGTTACCAAGTATTGCTAGGTCGGACAGTGTTCACACTT
GATGCTTCATTTTAAGCTAATAAAATTTATCCCTTTTCGAAAAAAGCAAAAATCAGAGCT
TGGAGATGAGGCTTAGCCCTATGACCAATAAGACCAATATCTCTCCTTAAAACAACACAC
ACCAACCAGCCAAAGAAGGTGTCTATGCTGAAATATGCAAGCGTTGCGTTGTTTCCAAAC
GTTCCACAAAACACAAGTCGCCACCTCAAAGAACCAGGGGCCAGCAAAAGATTGTTTAGC
CGAGCAGAACATGGCAGCCATATCATGATTTTGGGTTCAAGTTATGCCAATGTTGTTCAT
CTATCAAGGCTGTCTTTGAGGTCGCCTTCTCGAGAGAAAAACGATTCACATCGCTGAGTT
AGCCTTTCTTCCATGAGAGAGGTTTCTACAAACAGCGGGGGCGGAGCCATTTGTCTACAA
ATGAAATGAAAAGTGGAACCATGCTTTCTCATTCTTTTCCCTTTGTCAAAGAATATACAA
TCTAAAGCCCTACATTTCCTCTTTGAGAAAAGAGCAATCAAATGAATTTTCATCAGAGTT
TTTGTTGTACATCAGAGTTAGAAAATTAAGTAACTGCACACCATTGTTACTAACAACAGA
ATCAGGAACTTTTGCCACTGAAGTCTCCATCCCGAGGAGATATCGTGCGCATCAACTGTG
TATGTTGCCCCTGTCTTTTCATCCTTAACTTTCATGCTAGAGGAGCCTGGAATGGAAGGA
AATGTCAACAAATAGACAAGCTAGAGAAGTTGTAAACCAAGAAAATGAATTTCAGATTTT
AGAACCACACAATGCGTGCGACATTTTAACAATCTTTTACAGAACAACTTTCGTTTAGTT
CCAAAGAGTCTATCTCTATCTGATGCAAAATGGGGTCGGTAAATTTTTGTGCAAATTATT
CCAGAACTAGCTAAGACCTACAGGAACAAAAATGAGATTATAGCCAGCTGTGTACAAAAA
CCGGTTAGCTTCAACCTGTAGAAGGATGCTAAAGAAGAAGAAATGTACTGCTCAGGTAGC
TGAAGTCACATGTATTGAAGGAAATTGAACTAGAAGGTGGTAGCCAGTTTTGCCCAGGTT
AGAGTCAACCTCTGGTTGAACAACAGCTGCAAGCTAATACCAAATGAACCCTAGAATGAG
AAGAGCTAGTACTTACAGTTGTAATCGGCCCATCCAACGACTTGGTTTTCCAAGTCATAG
ACAACCACCTTATTTGAAAGGACCAGATCTGAAAGAAACACAGTGGCATGAGAAGCATAA
TTAAAAAAAAACGCCTTCATGCGCAGAGAAGTAATGACCTCCTAGAAGCACCATATCCTT
TCCATCCTTTGATTGCAATCCACCATTTTGGAATCCAACACAATACAGGTTATCCTGTAC
CAAACAGACAACAAAAAATCGCAAGTGTCATAAGCAGGGGTTCAAAAGACCATTCACGGG
CTGCCCATGACTGGCTGGCCAGGGGCCCTAAAGTTTCTGAAGTACTAGATTCTTCTGTTC
GTTGCTTCTTGTTTGATATAGTGAATTAAAAGCTCCCTCATTCACATAACAAATTAATAT
TAACTCCAAAAAATAACTTAACTAATATAAGTCTTTTTAGATATTCCACTACAAACTACA
TACGGACGTATATAGAAATACTTTAAAATGTAGATTCACTCATTTTGCTCCGTATGTAGT
CCACAGTGGAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTGGATAAGATTCAG
GGTGCCTTCTAATTTTTGAGAACTTTTTCTTTCCAAGATTGGAGTTGCAAATTCCTATGG
TATGCATCCAATCCCTTCCCTCCCTCCCTCCCTCCCCTATTCTCCAAAATTCATACTCCC
TCCGTCCAAGATTACTTGTTGCAAAATTGAATAAAAATGAATGTATCTAGAACTAAAATA
CATCTAGATACATCCATTCTCATGACAAGTATTTCCAGACGAAGGGAGTATGTTGGTTTC
CTGTGCACGAACCAAATGTTAAACTTCATGCACTAGCCAATGCAACCAAAAGTTCAATTT
GATGGAAAGGGCTAGGCAATCCGCATATACACTTCAACACCCCCTCTCACGTGTGATGCG
GGAAGTCAACACGTGAATAGACTCAGAGGTATGGCTCAAGAGGCTTATGGCTCAAGAGGC
CTATACATGGACAGAGAGGGGGGACAACAATTTATTCAGCCAGGATTTGAACTCAAGACC
TTAGCTCTGATACCATGTTAAGCTTCATGCACTAGCTAATACTACCTCCGTTCCTAAATA
TAAGACATTTTAGAGATTCCACTATGAACTACATACGAACGTATAGTCATATTTTAGGAT
GTAGATTTACTCATTTTGCTCTGTATCTAGTCTATAGTGAAATTTCTAAAAGGTCTTATA
TTTAGGAGCACGGAGGGAGTACAACCAAAAGTCCGAACTAATGGAAAGGGCTAGGCAATC
CGCATATACACTTCAACACCAAAGACATCACATGCAAAATTCCCATGTTCTCAAATCTCG
TAGGAATCCACAATACATGAAACCTCAATCCTATGTTTGTTTTTTCTATTTTCTACACTT
TCTAATTACTTCAACCCAAGGAGGCCCTAAACAACTTAGCACCTGCTGTTCCAACTGGAA
TAGGTCCCTTGCTAGCTGCAGTCCCCATACCATAACTTCTGGGCTGCAAGCGACCCTAGC
CATAACTCAGATTAAATTGGATACATTTAGGTTCAGTTGCGACTTGCAAATCATTCAGTG
CTTCAGCAACTTCCGGAGCAAATAATTTGTGACTGACAAAGTAATGACAATGGGTGAATA
AATGTTAATTCTATCATTCAGCTCTAACACCAAGGGTAAAATTTTATATTACCCCGTTTT
GGAAAAAGTAATCATGTGGATACACATTCAGTCCAAGATCATTCTCAAAATGGAAGATGA
TTTTTGGAAATCCATCATCTACACTGCAACAAAAATGAAAAAAAATAGTTAGGACCATAA
TAAGATACTCAGAGCTTATCATTCATCTCTGTTACGATTTAATTGAAATCTTTTCTCGAG
AAAATGCAAAGAGACATTTCCGTTTCTTTTCATTGAAAAGGCAGGGTTTGAGTTACAACC
CTCCTAAGAGGAACAACAGGTGGACAAAAAACAGAGAGCTAATTGAAATCAGAACATGCA
TGCAGTAATGAGGTGGTTCATTCACAAGCAAGTGGGTATTATCAATATATAACTGGATAG
AAGTTCAATTAGCTATACTATTTTTACATTTATCAGGGTAGACTCAGTGGGGGACTGGGG
GTCTTTCCCTACTGCTTCCTTACAAAAACATACTGTAGCAGGGTCGACACAACTGAACTG
ACAGTTAGTCAGTTAGTGCTGTCAATTATAGCTAGATTCTGTGTTAAAGACTAGAGTATA
CCTTTCATGATACTGAAAACACAGAAAATCTTGAATACTGCGGAAGGTCATATCCTGATG
CTTGGCAAAAATCTACAATTGGCCAAGAAATATAATATGTAAAGAGAATGAAAGCATTCC
TGCATTACAGCGGAAAAACAGGGAGAATGCCTTTTGGCATACCTTAGCCATTACTTCCTT
GTAAACCAGCTCCGGAAGATATGTCAAGGTTGTACCGCTATCAATGATGGTACCTTTTTT
CTCACCCGTTTCAAAAATATGTGATGGAAGCTGTAGAGCAGTACCACCAACATCAATTGA
CTTCAGATTCACATTGTAGTGCGGCCTGAGTGGTACAATCATGATAAGGTGTTAAGACTG
TCAAGATAGAATAGGAAACATCAGAAAAACAATCTCAGAAGAAAAAGAAAAACACAAACA
CACTGAGAATACTGGCAACGGCCAAATTTCAGAAAGTTATGTGCCTTCTTCTTTGAAATT
AAAATATGAACTTTAAGGAAAATAAAGTTACAAAATGCTTTCCTACAAATGTCCAAACCC
ATGCCATCATCCCAACTTCCCAGTTCTAGAGATCTACCACCAGGGAAATTGCACGATTTC
TTGCGGTTCTGATTTTATTGACACTAACATCAAAATACAAAATTTGTGTCTGATTTTTTG
CACTAACCAGGAGTCCGAAATTACCAGTCACTAGCTGAGAAAAATTTCCCTGCATTACAT
ATGAAGCGCAAAAAATATAGTATCTGCCAGAAAATATGTACATTCGCTTAATTTGGCCAT
AAGGTGACAGGTAAGAGCCTATTTATTCAAATATGAAAATGAAGCATCAAGTTAAATTGG
CCAAAGGGAACAATATGAAGAGAAAAGGCTACTGGCCTGATGACACGAGTGCAGCATATG
TTGATTTGTATTGTATCATGACATAAACCTGCCACAGAGCTTCTCCACCCCACAGATATT
CCAACCGAATCCATCTTTTCCTTCTACATAAACTTTTATTACCAAGGATTTGTTCCATAT
CTTATTCTGTTGCATCTATTACTTTCACACTAATTAAACTGTTGGGCCAGTGAAACTAAA
ACTAAAAAAGAACTCCTGGACCAGTGATTCTTAAAATCGGGTCAATAACTAACCATGCCA
AACTTAATGCCAGTTGGACAAATAGGTCACATGATTTAATCTAAAACCCTTCTCTAGCAT
GTTGTAGAACAAGTACAACTGCTGCAGGTACGTGTTCCACCTACCAAGGGCATTTCCAAT
TCTCATTGCTCAAGGGAGACAATAAGCTGGGACTACACCTAGAAAGCTGTAGTCAAAATT
CACATGCCACAATGCTTAAATCTCCCTTGGAGCATAGGGTGAGTCCCACTGGAGAAAAAA
CAGCTGCTCGTCCACCCAACCATTGTCTTCCTCCTAGATCACCAATTCCATTCCTGCTCC
TCCTGAAACGCAACCCAAATCAGACTCACCGTATCCTCCTTCCCCTTTGCTTCACAAGTC
ACCACCAATCAGGCATCACGACAGCGTCTTCTCCTTCCTCAACAATACCAGAGCTCGACA
GGAGTGGAAGAATGTGAGCTTTGCATGCATAGCCGTTGTCTCCACGCACCCAATGTGTCA
AAAACTCCAGTCTGCCTCCACCCCACCCATGCATGACCCGGGCAGAGAATCTTTGGTGTC
ATGGGATGCTCCAGGACTCGCCTCCAAACTCCAGGCTTCTTTGAGCAGCACGCGCTGGCA
TACCCATCGTCATCAACAAGTGCATGTCACCTCCCTATTTCAAGCCGCAGGCTACCACGG
TGTCCCTCCAGCGGCATAGGCTGATTCCGAGCCCCAGGCAGAAAGAACCACATCCCCACC
AAGTCGAGCAGCCGCAACCAATGGTGATTGACCAGCATGCAACAGAGCCTTGCCCGAGGT
TGCTGCCTTCTCTGTTCCCATCATGGAGATACCCGGGCTTCTGAGGTTTTAGAGTTGGAA
GGAGAGAAGAATAGTTTTATGACTTATGACCATGCCATGAGGCCAAGAACGGACTTAATA
TTTTGGCACAAAATGTATATGGCCAACCTTAAGTCCCTTATATGACACCTCTTATTTGTG
ATTAAAGATGCCCTAATCCTGCAGATATTTTCTCTTCCTTTTTCTTCATTTTTTGCTTCA
GGCACCAGTTTTGGGACATCCAAACCAGGGTGACCAGCAAGAATGGGTGTAAGACATAAC
AGTCAATCTCCAGTTCCAAATTTCCAGTAAAGTTGCTACTTTCATCCATCTTTAGGAACT
GCATGCATTAACCAACTCAGCATCTCAATCAGCTTGATTTAAACTCTTGGAACTGTTTTT
TCCACAAAACTCAAGTTAAAGATCTGGCATTGTTCCACATTCCCTCCGATAGCCTGATGT
GCGACATCATACATTAGTTAGGTATAAAATTTACACACTGATGGATCACTTACAGGCAGT
GGCGTACCTAGGGGGTATGCCGGGTATGCCATGGCACACCCAGAATTTTAGAAAACATTA
TTTTACTATGTATACAAATTAGCAGATTTAAAGGGGCTATCCAAACCAATTAAAATAGAT
CTCATATTTTAAGGTGTGCACACCCACCATTTCATTTTTAGGTCCGCCACTGCTTACAGG
TTAACCTTATGTAAATTTTGATAAGGCACCAGCAGTTTGGCAGTTCGTAAATACTAGCAC
TAAACATACATAGCATAGCATTCACAATCATGAACATTAATGCCTGACATACTTTCTACA
CTCGAAGTTCCGTAGCAGAAAGCATCCTAAACCATAATCACAACATTTACTGCCGAACAG
GTTTCAGTCCTTTAGAGAGACATGAACTCTACGACTGGTGCCAAGCTATGGGATAATGCT
TTTTAGAAGTTTCTGGATTACACATTAAAGCATCTCAATGGGAATCAGGAGTAGGGTCCA
AGTCATCCATGTCAGTACTTAGTTATCTACATCGACCAGAAAAAAGCAAACGGAGGCAGA
CCTTATTTCTTTCTAGCACTAACTAGAGTTATTCACCTTCGTTGAATTCATCAAGTGTTC
AGCTTATTATAATTGTGTTCAAGGAAAAAAAACGACAGTCAACTGAATCAAATTGAGCTG
AGTCACATACATAAAACTCAAGTAACTGGCTTGAAACCAGCTCAGGTAAATGGACAACTC
GTCAAAAAATAAGTACATGTACAGATGAACAAAATGTCAATTTATTAATTAATGGCCATG
AATACTTATAAACAGTTTCCAAAATCATTAAGCATTATCTTCAGCAAAGAATGGACCAGA
CCTTCAAGTTACAGTCGTAGAACAGATTATTGACATCAACCA