Map Locations of contig_274586 (11000 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_274586

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44354 8 9670 bp MLOC_44354.7 Available Available LOC_Os06g43120.1, FRAME:+2, EVALUE:0.0, 13106.m04512 protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MLOC_44355 2 1775 bp AK359467 Available Available None





CDS Structure of MLOC_44354






CDS Structure of MLOC_44355






Contig Sequence (11000 bp)

>contig_274586 11000 assembly3_WGSMorex_rbca.fasta
TCCCCCGCCTCCTCCTCCCGAGGCCTACTCCACCCCGCAGCCGCCGCCCTACCACAGCTC
GCCCGCTCAACACTACCACGGCCAACAGCGTCACCCCGACGACGAGATCCGCCGCGCCGC
TGGGCACCACCACCAGCACAATCCCCATCACCACCAGCAGCATCAGCAACAGCCGCAGCA
CCACCATCAACAGCAGCAGCAGCAGCAGCACCACCACCATCATCAGCAGCAGCAGCCTCC
CCCGTGGGAGGACCCTGAGGACCGCAGGCGGAGATACGCCCCTGCCCACAAGGAGCCAGA
GGACGACAGGCGCAGATACGCCCCTGCTCACCAGGAGCCAGAGGACGACAGGCGTAGATA
CGCCCCTGCTCACCAGGAGCCCGGGGAAGACAGGCGCAGATACGCCCCTGCTCACCAGGA
GCCTGGGGAAGATAGGCGCAGATACGCCTCTGCTCACCAGGAGCCAGAGGACGAGAGGCG
CAGATACACGTCCCCCCACCAGCTCCGTCTCTCACCTCCGCCCAGCCCGCGCAAGAAGCA
GCGGTGCGCCTTACATGACCGGGTCGACCTCGAGAGCACCTCCAGCTCTGGCCCGCTGCC
TTCCCGCCATCAGAGGCAGCAGCCCAATGCCAGCTACGCACCGGTCGACAGTTTTGTAGA
CAGGCCCCCTGTGCATCCCGGCTACAGCCACGAGAGCTTCTCAACACACAGCGACAGCAA
GGGCAGCAGGAAGATTCAGATGGCTTCGCAGACGTCAACGCTGTCTGGCTCGCCATGCTC
GCCACGTGCCACGATTCTTGCGCATCCGAGGCGCACCCCGCAGAAGGAGCCTGCCCCAAG
GAGACTTTCTGTGTGGCAGCGGATAGAGGAGGGCCCTGCTGCTGCTATGCTACAGCCGCC
ACCGCCAAAGGCCTTGCATATTTCACCATCCAAGTCAAGCAATGCTGGCTCTGTTTCAAA
GGGATTGGCCAGCGTGATCTCTGTAGACTGCAAGGTGAAGAGTGCTGGTAGTAATGAGGG
TGACAGCACTAAAGTAATAGAGAAGGATGCTGGAAAAAACATTAGGAAGGTGTTGTCCTC
TGTTCTTGTGAAGCCTTCACCGGAGTCCAAGGAAAAAGAAGTGGGTGTTGTGAAGCTTCC
TGGGAAGCATGATAATGTCCAGGAGAATGTGGCAGATTCCCCTAGTAAAAGTTTGGGCTT
AGCTGGTCGTCCTGTGGCTGGTGCGAAGAAAGTGAAGAAGATAGTTATCAAGAAGATTGT
GAGGAGGATTGTTGGCAAGGATAAACAGATTAGTAGCGAAATTGTATCTGAGAAGAGAGA
TAATATTGATGCTATTGCAAATGCTTCTGAGAAAGAAGAGGGTGAAATCATAACTTCATC
GCTGGAAAAGGATACTGTATCTGAACACAACTTGGTTAGCACTAGTGGTACAGCTGGAGC
TAGTAATGATGTGAATGTCCAGAAGGGTGAAAATAGTAACTCAATAAATCCACGTAAAAG
GAAAGCTACTTCATCCATCGAGTCCAAGAAAATTCTTGATCCAACAAGTTGTAGTGGGAG
TAAGCATCCTGGAAAGGAAAACAGTAGAAGCTCCATGGTTCCAGGTGATAATAATGCTGC
TTCAGCCATTAAATCTATGGAAGCGCTTGCTGCAAGACGAAGCGAGCATCTTGGGAAAGC
AAATAGGAGCGGTGTTAGGAATGCAACCTTGGTGTCTACGAATGATAATTATCAGAAGGA
GGAGGGTGAAATCATGTCTCTTTCAGGTGAAATGAGTGCTGCAAGTGCAAGTAATCCTGT
GAGAATTTCTGATAGGCGTGCAGTTTCCAGCAGGGAAGTGAGCAAAGCTCGTAAGGATGC
TAGTGAAAAAAACACTGTTTTCATGAATGGAGTTACTGTAAATCATGGTGCATCAGAAAT
TTGTGGAAATGAGGATGCTAGGAGTGAAGGTGAGGGTATGATTCTGACTGGTTTAGGTGA
AAAGAGTATTTCTTCTTTAGGTAAGACTATGGGAACTACTAGAATGGCCGAAGTTAGGGT
GAGCCAGGATGCATGGGAGGAAGAAGGTAACATGCTCGCCCATCGGGGAACTCTTAACGC
TATGGAAGTTGGTGCCAATGAGGATATCCTGAGTAAACAAGGTAGAATGTGCATGGAATC
AAGTGAAGGTAATGTTTCTGTGGCACACCATGTGAAGGTTTTTAATACAAGGGAACTCGT
TGTGAATGAGGATACCAGGGACAAAGAGAGCCAAGTCCCCTTAGAATTATGTCAAACTAA
CACTTCAAAAACAATACACCACTTGGAAGCTCCTAATACATCAGAAACTATTAAAAGTAA
GTTTGTTGGCAAGGAAGTGGGCAAGAGCCTCATGGGGTCAACTGAGAGACATGTTGCCAC
CACCGCTAATTCTGGGAGCACTCCAGAATTTAATTTAGCTGGTGGAACTGGCAACAGCCA
CATGGAAGCTCTCCTCAATGACGGAACTGCTTTCAATGAATTAGATGCTCCCCTGGAAGT
TGAAGGTAGAGATTTCTTTAATCTGTCATCTTCCAGAAATGTTGAAAGCATGAATGTGCT
GCCATTAGATGATGATCTTATGGAGTACTCAACCCAGGATATTGTTTTGAATAATGGTAT
AGAAAGGGGCGGTACAGCTCAGGTAGCAGAACTGATAAATCTTCATAGAGGTCATCTGTC
TCCCGAGATTGATTTTCCCTTGGCACATTCCCGTGAATCTTCATCTGTATCTGGTAACTG
CGAGCAGTCTGTTCCTACAACTTTGACACTTGGCAGTAATTTCTATTTCAGTAACATAGA
AAGTGAGCGACAGCTTGAGGAAAACCATCAGCTGCTGGAAGGCCAGAAAGGATTTAATGT
TTCCACAGTGACAGAATTTGATAGTCTTGTAAAACAAAAAGGTGTGGCTGATGATGACTC
AGTTGGTATAGGTTCTCAAAATTGGCTGACTTTACCTCCAGCGGTCAACAGCATTGCTAT
GTCTGAGCAGTTTGTGACTAACGATGCTACTGTTAGGGAAGATGGGATAGGTTTGGGTCA
GAGCGTGGACAATGACACTTCTGTTAGTCAGGATCATGATACTGCACAAGATTTGGAGCG
GTGTGGAAGTGTGGATGCTTTCTCTAGTCAGGTTAACAGCATTAGGCTATCTGTATTTGG
TAGTGATATGCCTCAGTCAGACTCATTGGCACCCAAAGAGATCAGTGGCGATGTTGAGAA
ACATGGTGAGATGGTTCTCTTGGGTTTGCACTCTATTAGCTCAACAAATGTTGTAGATCA
ACATGATCATCAAATGGTGGATATTCCTGTGGGTAACCCAACTGAACCTGCTATCCCAGC
TGTAGAATCTATTGATGTGATGGATGCAGAGCTACTTTCTCCTCAGGTATCTGTTGAGCC
GGATAATACCTATGACAGTAATAAAGGAATCAGTGGCGATGTTGAGAAACATGGTGAGGT
AGTTCTCTCTGGTTTGCACTCTATTAGTTCAGTAAATGCTGTAGATCAACATGATCATCA
AATGGTGGATATTCCTGTGGGTGGTAACCCAATTGAACCTGCTATCCCAGCTGTGGAATC
TACCGATGTGATGGATACAGAGCTTTCTCCTCAGGTATCTGTTGAGCCAGACAATAATAC
TTATGAAAGTAACGCTGAAGGTCCTGTGGTTAACTCAAGCACAAAGAGAGATTTGTTGTC
TTCTTGGATTGAATCCATTGTGTCAGAAGCTAAAAAGGATCATCAACCATGCAAATCTAC
TTTACCTTCTATTGGTTTGCCAGTCTTAGCACCAAAGGAGGATAGCAGGAGAGCAGGATT
GGACTCGGTTGGAAACCCTGTGGGAAAGTCTCCTCAGATGAATTGTACAAGCTCTATGCC
TCCCAAGGTAGCTCCTAAACAGGCAAATTTGCCCAGTTCATCCCGAGAGCCTCCTCGTAT
AAGTTCAAATGCAAGGCACAAGACGTGGCATCGTGGTGACATGGCATCTTCTACATCTTT
GCCCAGTTCACAGCCTTCAGGATTACCGCCTAAACAACCACCAAGGAGGAATGACAAAAC
CCAAAACTCTTATATACGCAAGGGTAACGCCCTTATTAGAAATCCAGCAACAGGAAAACT
TTCTCATTCTTCTAGTCTGGATACTCAGAGTATGTTGAATAAGCCTGTGATGAGGAGAAG
CATGAACTTCGTCAGGAAAGTTGATCCAAATGATTCTGCAGCTCGTTCTAATTTTACAGT
TGAAAGACCTAAGACTCCTCCTTTACCACTTCATGCCAAATCCATCAATTCAACAACAAA
CCTTCCGGAGCAGTTGTCTAAAACTTTGCCCAAGCAGCATGTTCCAGAAACTGAAAAAGA
AGGTTCGGCCAAGCAGTTAAACGCAGGTGTTGATACCCCAAGCATTAGAAGTGCACAAAC
ACCTGAACCTTCAGATGCTAGTAAAGTGGTTTATGTTAGACCGAGATCAAATCAATTGGT
TGCTGCACAGAGGCCGTGCCCTGATGACCTGACTAAAAGTTCTATGGATAAGGTTTTATC
ACTGCAGCCACCCACAGCCTCTGATTTATATTTCAAGAAGCGGAAAAATCAGATTATTTT
GAGTTCATCTTCCTCTGATGGTCAGAATACGAAAGAGATTATACCTGCTGAGAGCTTAAA
TTCAGGTGAGAATAAAGGTGTACAAATTGCATCCTCGAATAACAGTATCAGTGGTTTAAA
GGAGAGACCTCATAAAGGTATTCTATTTTCTTGTTTTCTTTGTTTTCTTTCTGAGGCATA
CCACAACTGCAACCTCATACTTGAATAAGGAAGCAATGCTAATTCCTTAAACTACCATAT
GCTCAAACTTTTCTAAATGCAGCTCTTCAGACAAATAATATGGGTACTTCATCCCACGTG
TGGACACTCAGTGGGCAACAACCACAGAGGAAAGGATCTGTGGGAACTAGTTATGTGAAG
ACCTTCCCACGTATTCTTCCATGGAAAAGAAAAATATACTACAAGAATTTTAGAAGCAGT
CACAGTCAGAATGTGAGCTCCTTACGAATAGTCAGGTAATATTAGCAGACTGGCCTTGAT
TTATTTCTTTCTCTATTGAGCCATTTCATTCAATTTGTTTATAGCAAGTCTTTGCCATTT
ATCGTGTAACAGAAAACTATTACAAACCAAGAAGAGAGATATGATTTATACGGTCTCAAC
TAATGGGTTCTCTATACGGAAATCTGGCGTGTTAAGTGTTGGTGGATCAAGTTTGAAATG
GTCACGATCTCTTGAGAAGCGCTCTCAAAAGGTTAACGAGGTAACTTCGTCGATATTCTC
TGTGCCTATTTTTTCATATTCAGTATTCCATAAGAGTCAGTTGGCGTTATTTTCATCAGA
CCATTATGTTCCGATGGGAAGCCCACAAGAAGTATTTGGGAGACGACTTGATTTATGTTA
CTGGTTGAATTTTGTTGTCTCTTAATAAGATTCTAAGTAGTTTGTTGGCTGATTCATCAG
ACCGTTATATTTTGATGGGAAGCCCACAAGAAGTATTTGGGAGATGTTACTGGTTGAATT
TTGTTGTCTCTTAATAAGATCCTAACTAGTTTGTTGGCTGATTTCTAACCAGAATGCTGA
TCCTTGCCTAGTCATGAAAGCAGCCATGCAACTAACTTTCTTATAGTTGTGCATATATGT
TGCATTTTATGAAGTTACAACCTGGATTGTAGGAGGCTACATTGGCAGTTGCTGACGTTG
AAAAAAAGAGAGGAGAAAAACGGAAACGGCAGTATCTCCATCATACTCGAAGAAATGGTA
ATATGTTTAACCTGTTGCCACTAATGAAGAATGACTCAACTGCTAAAATAATTTATACAT
GAGATACATAAGTTTGGCTCCTCCTTCTCAATTGCTCCTTTAGTGTAATAACTTAACTTC
CATGCCCCATCATATTGCGAGTCTGCTTCTCAGTTTTATCTTTATTATATAATTACTTCT
GTGGTCCACCATATGACAAGTCTAAAGTTGAATTACCTAACTGTGTGGATATTTTACTGG
TGGTCTTAGTTAGTTAAATCATCACTTAGTGGCGATTCCATTTCAAAGTGCAGCGCATGA
GACATCTTCTCTCTTATACTCCCTCCGTTCCAAAATNNNNNNNNNNNTAGAGATTTCACT
ATGGACTACATGCAAAGCAAAATGGGTGAATCTATACTTTAAAGTAAAATCTCTAAAAGG
TCTTATATTCAGGTACGGAGGGAGTATTGTCATAATTTTAGAACCTTCTCTTATTGGTTA
ATAATAAATTACATATGGCAGTGCTTCCAGTGGATGCAACTTTCATGTTGAACATGGTAC
CTTGAATTGCATTTGCAAGAAGACACCGATCATTCATTTGATCATTTTATATATTTCTTT
GTTTGTACTTGATGTTAGTCAAAATTTGCAGATCAATACTCTTTATCTGTTGCTGACAAT
CAGTTAAGAAACAACAATCAAGCGTCTTCAGATTTGAGGAGGTCGTCATCTTGCAATGGG
TATGTTTTTGACCACATGCTATTGCTTGCATGATGCCATCTTATCTTATAATATAACTTA
TTTGCATCTAGGATCTTTGAACTTTGATTTGTTCTCTGGTTCTCTTATTGTGAAACAGAT
ATGTGCGTGTTAGCAAAGGTAACCAACTGGTTAGAAACCCCAAAAAAGTAATTCGCATGC
TAGCAAATGAGAAAGTTCGATGGAGTTTGCACACTGTTCGATCACGCCTGGCAAAGAAAC
AACAGTACTGTCAATTCTTCACTCGGTTTGGCGAGTGCAAGAAGCCTGAGGGCGAGTGTC
GCTATATTCATGACCGTGCTAAAGTGACTATCTGCACTAAATTTCTTAAAGGCCTGTGTT
CTGACACTAGCTGTAAACTCACACACAAGGTAAGACATTTCTTCTTGATTCTACTGCCTA
TCTTGCATTTGACACTTCTTTCATTGTAAGAGTCTGTTCTGCAGGTCCTCCCAGAAAGAA
TGCAAGATTGTTCTTATTTTCTGAAAGGTGATTCGTTTCATTCCAAGTGCATCATTTTAC
AACAAAAAATCTGCAAGCCTTTTCTTGATCACATGCTTCTTATTCTGGCAGGTCTCTGTA
CCAACACAGCTTGTCCCTATAGGCATGTTAAAGTGAACTCCAATGCTCCTGCGTGTGAAG
ATTTTCTGAAGGGATACTGTGCAGATGGTGATGAGGTACTTAATGATATTATTACTGAAA
TCTACCAACCTTATTCAAGTATTACTATTGCTAGGAGTGAATTCAGCATTGTCCTCAACA
GCTGATAGTAAACTTGTCATAAAAAACCCAGAAGTGAACCATTGTGAAAAATGTCCCTAA
TGTGAAACTATGATACGCTCTACCCACCTGCCAATCAATTAATATTATCAATTCAATGTT
CTTGGTAGGTAGTATAATTTACTGCATGAGACTTGTAGTGTTTTTGCTGGGATCTAGGAG
TATATACATGTTATCAGTCATGTCAAAGTGGATTATCCAGTGTGGTTTAGAGATTAACTG
TTAATAAGCATGGTTTTGCATTGGAACCATGTTCATCTTTTGAACTTCGGGGCTTCCACG
ACCTTTTTTTATGTTCTGAACAAAGTTGCTAATCTTTTCATGGTCTTGAATTAATCCTCT
GTTACAAGCAGTGTCGTAAAAAGCATAGCTACGCATGCCCAGTCTTTGAGGCAACAGGAG
AGTGCCCACAACAATCTACGTGCAAACTTCATCACCCCACCAAGAAGCCAATCAAATCTA
AGAGAAGCAGACCAGACACCCCCCAAAACAGTAGCTGGGGACGGTATTTTGACACCAGCA
TTAGACATGACAGCGAGACAAGCAAAGTTTCTTCAGGCCAAGATGACAGACAGAAACAGC
AACATGATGTTTTCTCAGGTGGGGACTTCACTGACTTCATCACCCTTGACATTGATGGTG
AAGAAGGTGTTGATGAACCAGACAACATACAGAGTGTTGGTGTGCCAGACAGCATACAGA
GTGTTGATGTGCCAGACAGCATACAGAGTGGTGATGCGCCGGACAGCATACAGCTGATGG
AACTGGACTCGGGGGATCTCGGCGCGGAGGCTGATGATCTTGATGCACTAATCAAACCTC
TTCGGATCATGAGAACGGCAAGAGTGTGACAGGCTAACAACTGCTGGAACTTGGTCTGGG
GCAAAGTTCAACATTCCAGCGTGCAGGGCTTCATAATCTTGATGCACAAGCGAAGCCGCT
TCGGGTCCTGAGGATAGGAGTTTGATGGCAGATGGGACTGTGCTAAGGGGGTTTCAAGTT
TTGGACATGGACATGCAGGTTGGTAATCAAGCTGTGACTCGGATCGGCGAGACGAGCAAG
GGTTTGACAAGTTTTTCGGTTATCTCGGATACCCGCTGTTGATATAGTTCTTTGCTGCGC
CTCACCAAGCTGCGGCGCTGACTGGGTTTTCTCTTCGACATACCCATATATAGATAGGGA
AAACATTCCTTGTCATTTCTTTTGTTCTTTCCTTTTTAACATCTCATTTTCATTCATACA
TAGGTTCCATTGTTTCAAACATAGTGGGAGCAACTGGCTGTATTACCTGTGTGTTGGATG
TAAAAACACATATCATATCTGTGAAAGAAGAAATGCAACTTTATTTGCAGCTTGCCTTGT
GAGTTTGGCATCAAAGGTTGTCACACACACCGGTATGTTGTTTGATATGTTATCAGCAGA
TGGTGCAGTTATCAGCAGATTGTGCAAACTTTAGACGTCGGCGTGATCAGGAGTGCTTTC
TCTTCATTTGTTTGAAGTAATAAGTAGAGGTTCGAAGACATGGATTTCTCTTTCTTCATC
AAGTATATGTAGATAGTTGCACATGGGCAAAATCAAAGTAGCTGGACATATTGGTACTTG
TTACCAAACGAGAAGATCTACACAAAAAGGAAGAAAGAAAAAAACTACTGCCAGATTACA
GTTGCAGAACCAAAAGAGATGAAAAAGAACCCTAGTCGTATGCCGTGTTTGTTTGTAGCT
CATGCCGGTTGAGGGGTGGGGCCAGCATCCGCTGGAGAGATTGTCACGGACCGTAGTAGT
TCCAGTGAGCTCGATAGCCCGAGAAAATGCGAGAGGATGGTGTTGGCTGAAGCCTGTCCA
TGGTGAGAGACGATGACGATTAATACACAAAATGAAGTAAGATTCTACTTCCTCTTGATC
CATATTAATTGTCGTCGACAATTAATATGGATCGGAGAGAGTAATACTTTCTTAGGCGAG
CCTAATAGAAAATGTGATCCGATGTCGGCAATTTAAAGGTGTTCCTATTACTATATTTGT
GAAGATTGCACATTTTGTTACTAACCGTGTAGATCAAAGTTCGGATTACAAAAACTCAAA
CAGACCACTTCGCAAAATGGGCGCATAATGACCACCCATGGAAGCTATTTTCATTCTGCA
AACAATCAAAATGAAGGGAAGATACAATGCATACCTGAACAAGAAAAACATCCAGAGCAA
GAACTGGGCTCTGGCCAGTGGATATCCCCTGGTAGTAGGGCACCGAGGAGGTAGTGAGAG
CTTTTGCTACCAAAGCACCAACAGTCGCCTGCATCCCGAGGACCGCAACACCCATCCCGA
CAACGTTGAGTACAATACTGTTCCTCAGGTTTTTAACCACAGCCGCACGCGGAGGAGCCT
GGAGGAGACAAATGCACATATAAGCAGAACCAAGTAATATTATGATCAAGTGGCAGGCCA
CCGTGTGATGCATTGTTGTACCATGATATTACGGCACCATGCCATCAAATGAGCTGGGTG
TGTTTATGAATCAAGTTAATTGTCGACAGGTAAGCAAGGTCAGACGTCATGCACATACTC
CTATATGCAAAGGGAGCGGGTGCGTAGAAGCTATGGCTTTTCAGCAAATAGAGCGATAGC
GCAGGGGGACATTATTTGGGAAACTTGAGTACCTTTGCAGGCTCGGTTGCTGTTCTCCTG
AGCGTTTTGGAAAGACGGATGTAACCAAATGACCGGAACACTGACATAAAGGCCGCAACG
ATGCCAAGTCCGGTCGCATAGAATGTAAAGGGAGACGTTGCATTCCCGGTAGCAACTGCG
GAGAAGGACAAGATCCCAGCCGAAACGGTTGTGCACACCAACTGAGACCAGAATGCCAGG
GTGCCCAAATTCTTGAAATACCGCGCTGTCTTCTCTAGCCTTTTGCTAACCTGCAAGCGG
ACAAAAATAACACAGAGCAAAAGATGATATATGAGCCGAGCAAATAGCATGAAGAGAAGC
AAGGGCGGTAAGGAGCCATGAAAAACAGGTGGTTAAACAGGATGGAAACACTTGGTTTGC
AGTGCCAGCCTTCAAACACAAATCATACCAAGGGTAGCATACCAAAATGAGCACATAACA
CAAGGATTTGAAAAATAACAGTAGGAACTATAGGAATCATGGATAAATGATGCTACCAGA
AGTTTGACATATCATGTCGAAGTCATGTAGTCGCCTCATGAGTTCAAAGATTTTGATAAG
AAAAAAAAAAAGTGTGACCCAAAGAGGAGTCTCAGCATAATGTCTTTAACCAGAGAGCAA
CCAGATGCACCAATTAAGCATGTGGAGTGAGAAAAAAAATCTATCGGAAAACATATGCTG
GTTGATGCAGGTACAAATACAACCCCACTATCAATTGAACAAGGACTGCTGCCTTGCAGG
ATTGAACAAGGATTGCTCATGCTCTGTCTGCGTATCCTCGATGAACACGAACTCTGAATC
GTCAGCATGTACTTCACAGTTTCCCAACCGTTCGTGCAGCAATTGGGCAAACGGCAAGGG
GCTGCGATAATCTGAGTTTTCCCGGAGCACCAGAGCGAAAGCCATAGCCGGCACCGATGT
CATCACACACTATCACTACTGACTAGGGCTCAAGCAGATCAGCGGGGGGAGGGAGGGGAG
CGGGGCGGCACCTGGGCGAG