morexGenes - Barley RNA-seq Database

Contig contig_274574
Source Contig contig_274574
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_274574 (8776 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_274574

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44345	2	597 bp	MLOC_44345.1	Available	Available	LOC_Os02g48170.1, FRAME:-3, EVALUE:1e-22, 13102.m05439 protein class E vacuolar protein-sorting machinery protein HSE1, putative, expressed
MLOC_44346	3	2770 bp	AK248880.1	Available	Available	None
CDS Structure of MLOC_44345

CDS Structure of MLOC_44346

Contig Sequence (8776 bp)

>contig_274574 8776 assembly3_WGSMorex_rbca.fasta
GTGCACTCGCTTGGGCTGCGTCGGCGGCTGCTCGGGCGGCGGCGCGCCTTGCTCGGGCGC
GGGCGCGGGCTGCTCGGGTTGCGGCTGGGGCTCGTGCTGGGGCGGCGGTGCTTGCTGTTG
GGGCGGTGGCGCTTGGGGCTGGGGCTCTGGGTGTTGCTGCTGCTGCGGTGGCGGGGGGTT
TGGCGGGATCATGTGCACGGAGTTGGTGCCGCTGAAGGTGACGGTGCGCGCCACGGGCCG
CATGTACTCTGGGTGTGGGCCGGGAGGGTAGGCCATGGCGTAGTCCATCCTCTGGTCCTC
CATCCATCGCTCGCGCCCTGCGTATATGTTGCCGGAGCTCACAAACATCAGTTAGCTGCT
TTGTGTGACAAACGTTGGAGCTCTGACTTCCGAGGCCATACACAATACATGATCATGTGA
CATGAGTTGAACAATAAGGAATACTATACCAGCAAAACTCAGCTATCAGCTGAACATATT
CCGATGCTAGCTATGGTGCAAAAACTATAAATTCTGACATTACTCGCGCAAAGAAAACAG
AAAAAGAAAAACTAATGGCACAACTGAATTGTAGCGACAAACTAACAGCAGAACTGAATT
GTAGCGACTGAAGCCTTATCCTGAGAAATACAAAGGTCTCTAGCTCTAGCGAGCCTTTCA
AACTAGTACCTCTTGTAATCGACTCTATAGCTTTTTCAATAAACGCTGATGCGTAACGAC
ATTCTGCCGAAAAGAAGAAGGCAGAAGGCCAAAGCAGCTCGAGAATGGTCCGAAAGAAGA
AAGACGTCCGTGAACCAAGTGTTAGCTGAGCTCTCAGCAGCTAGGACTAGGACTACCCAT
CAATAATCAGAAAGAAAGAAAAAAACAGAAGAACAGAGAACAAGGGGACGTATCATACCG
TTGCATTTCCCAAGCGCTTTGGAGACGATCACGCGCAGGGGATAGCAACCCATCTCCCTC
CCCTCCCTATCTCGCACGGTGCTGTTGCAGTTGGCTCGCGTGTGCCCCTCGCGCGGGATA
CATGCTAGCTCCTTCAGTTCGCGGCAACGAAATGGAACCGGCCAACCATTTAAAGAAGAA
GAAGAAAAGGGACGCCCCTGAATAATTGCTCGGTTGGTGCTAGTGCTACCGTGCGAGCGC
TCGAAAGAAAGAAGGAATCCGGCAACAACGAGCGCCTACCTAAGCGCTTCTTTTCCTCTC
GCCGGAAGGCATCCACCGGGGCGGAAGAGAACAGGACGCATCTAAAGGGACGGCCCTCGT
TTTCGCGGATATTGATAGACCTCAGAGCGGGACGAGATAGTGGTGGCGGAATATATTCCT
CCGGAGACATGCGTGCCAGAGGAGAGGAAATTAGTAGAACCTACGTCTGCGTTTATAGAT
AGATAGATGGCGGCGATGCGCATGGTTTACATTTGTCAACACGTTGCTCGAGAAAAAAAG
TACACGTTGCCTGGAGGTTGCATCGATGCTTCGGCTGCTCTCTTCTGCTTTGCTTGCGTA
TTGATCTGCCCCAGTTTAGGCAGGGGTGAAGAATGAGCCGGCTTTGGTTTGGCTATGCTC
AGGGCTTTCAAGGATAGGATTTAGAAACATCATACTACAAATCTAAAGTGCCGAGGCACT
GTGTGACAAACACGACATCGGTGATACAAGGTCCAAGTCCTGGAAGGAAAGCTTCACATA
CAGAATAGCTTGGTCCAAAAACTGAATGACTGGGTATCAGCTCCCCTATATCCAGAAACT
GCAAACAAAGTACTCTGCGGAAAAATAGTTGAGACGAGAGCAAAATCGCTAAATGGTTTA
TTGCTTCTACAGGATAATAAAAATATATGAAATAGGTACAGAAAAGACACACCCCGCAGT
CCAATTATCCACAGGCAATGAAATCCTTATGTCATCTATTGAATTACACTATATCCTAGT
GCCCACCCTGACTCTAGCTCACCGGCATCGACAGCATTTCAGAGTTCCTCGCCTCTCCAT
GCTTGGCCTTCCTAAAGAAGGCCCACTGAAAATATCACAACAAGGCAGAATAAATCAAGC
CACGGTTGGCTGCAACGCTTTTATTGTTCTCCTCTTCCATGTGTCGGTCTCCGGTTCAAA
AGTGAGCTCCCAGGTCGGCCAGTAGTGAAGGTCCTGTTTCAGAGTGAGCACCCGTGGTTT
CCCGTTCAAATGGACGGTCTTCACCCTAACAAACTCACGGTCTTCCAATCCCTGAGGAAA
ATATTATTTTGGCCATATTAACGCAAACTAAATGACATGTGAACCATGTTCACCATCAAT
ACAAAATGTAGACTGGAATATACCAAAAGGAGACTGCTGCATACCTTCACCACTTGAATA
AAGGACTCCAGATCTGGAGTTGGTTGCCCATTAACTTCAACTATCCACTGGAGAGCATAT
AGGCCATATCTATGTACGGGACTTCCATGGCACCACCTGCATAACAAACTTGCTGCTCAA
TCCTAACACCAACAATGTGCTTCTAAACTGCACACCTAGCATCTATATAATCATATAAAT
ATTATATCATGGCGGACCCAGGAATGGGCCAGACCCCAGGCAAACTGGGCCAGACCCAGG
CAGCCTTCGTCCACTGTAGCAGGCTAGCTGCAGTAAACGCTACAGTGTACAAAGGAAATG
GGGCCTCGGCCCCAGGCCGCCGCCCGGGCTGCCTGGGGCCTGAATCTGCCCCATGATCAT
AGGTACCCTGCCTTGCCAATCGTATCAAAAGGAGGACGAAATGGATTCAGACCAAGTGTG
GACTTGAACTGTGCCTAGGATTTGAAGGTAGCATCCAAGCAGTAAAGAAATGACAGTGCA
AGTGTAACACTGGCTGGTGTGAGCGCTTTTCCAAAAATATACAGATAAGACATCCATTAC
AGGATGAGATTTCGTGAGATATGCTGATATCGGGAGAAACAACAATCCATTTTCATTTTG
CACTGGTATAGTCGTATAAATGAACTCGTGAAGCATGCCACAAGAGGAAAAAGGCATCCA
TTGATCACTCCTACTTATTTTCAGGAAATCCATCACTTGGTTTACATATTTTCACAACAA
TTACAGATCCTATATGGGTCGCATTCTTGTATTCATTGACGCGTCAGGTTTCTGATTCCA
TATGAAGTCGTATACAGCCAGAGAGCAGAACGACTTGAAAACTGTGTTAAGTGAAAAATA
GCACTCCCTTGAGCAAATCATTGCTAGTTTATTCAAATCTGATCACTTAATAAAACCTAT
ACTGGCTGCTACAGGTTTATGATTCCAACTAAACACTGAAGTCAAGACTCCTAAATGTGT
TAGTATACCAAAACAACTGAAAAATAGCACTGCCTTGAGTAAATTATTGCTAGTCACTCA
AATCTCTTTGATTCGCAAGATTTCAAAAACACAGGAATAGGAAAAATATAGGATTGTAAT
ATCATAACCGTTTTAATCCTACAGGATTTGGGTTTTTGTTTGGTAGCATCACAGGAAAAA
GAAAGGATTCTTAAGAGGTTTGAGTGGATGCTAAAATCCCTATGAAATGTAGTACATAGG
AATACTTAGGAGGAAATCCTATAGGGTTCAATCCTATGAATCGACCATCTCAAGAAAAAA
ATTCTAATCCTCTAAAATTCCTATGAGGATCCTTTGAATCAGAGAGGCCCTAAACCTATA
GTGGCTGCTACAGGCTTGTCATAACTCTTAACTAAATACTGAAGTCAAAACTCATCAGAG
TTGGTTCTAATATTTGCACATAAATATTTGTAAGAAAAGAAACATGTTTCCTCACCTAGC
AACATAAACTCCATGACCTTCCTTGGGCAAAAAACCAAGTGCACGCACTGCTGAATGAGG
ATCCTGAATTATGGATCCACACCAATTCACCATCCTCGTTGAACCATTACCATCTCTTAC
ATCGGTTCCAACAACAAGGTCAATTTCTTTTCCCTGCACGAAACAGTTGTAATAATGATA
TATATATAGATATTTCAGATTCGTATTGTAACTGTACAAAAAAAAACAATAAACCTTCCT
CACCTGACGAAATATTGTCATGTTAAGCACACCATCTGAATCGATAGGTTGGTCTAACTT
TTGGCAAGCATTCTCGATGTCAAGAAAGCATGTTATTGGTTCCTTGTTGATAGCCAGAAT
CATATCTCCCTGTTCCAGAAGCTTTTCCGCTTTTGATCCAGCCAAACAACCTTTGACCCG
CAAGACTTGTCTGCGCACAGGGTCCTTCTTAGCGAGAGCCTACAAAGATAATCAAATAGA
ACAATAAATATCTCACTGATATACGTACACAATATTCAGGTCCAAAAGCCAGAGAAACGA
TATAATCACGTTTGCCAGGTCAGGAAAAACAATTTTGAGCGAGATTAAGTGAAACATTAA
GCTAATTACCTGCACCCAGTTATCGCTCAATCCATAACTTCTTGCTTTCGAGAGCAAAGT
TGGATAAAGTTCCACCTCCAGAAGTCTGACAAGTGGCATCGGCCTTCGAATTCCATTGAT
AAGACGAAATGGTCCAGGAGTACCCGAGATTATCTTCTCAAGGACTTGACTTATTGCATA
TATTGGTATACCTCTAACGAATTGATGGTCCTCTGAAGTGCTGCAACCATATTTGAGCTG
GAGAGAAAAAATTAGGATGTCAATTACACCGTCAAGTACATGAGAGGTAACAACTAGGGA
TAGTACCATTACAGGATTATTTACAAGCATTAGGACTACAGGTTATGACTCATGATGTCA
GGCAAAAGGCCAAGAAAATCGGCTGCTTTACTTAATACAGTATAACATTTAGATTCTTAA
ACGCAATTTAGGATCTTTACATACTGAATATGTATTTTTATTACATTGCCCATTTACTTG
ATGTTGGAGATATCAAGCGGCTAACCTTGGGCGTAAGCTGCCGTTTTGTGCTTTTCTTTT
TTCTTTTGATCTTTTCAAGAAATGCTCCTGAGAACATGGGAGCGTCATTACTTACAAAAA
CAGACCAAGGTTAACAGCTCCCAACGCAAACTAACCTGGGTGGAAAAGCTTGCCCATAAC
GCTTGAACTCTTCCTTGCTCATCCGTCAATATACCCGAAAATGAGCTACCAAAATCTATA
ATCAAACAGTTTTCAGTATAATTACAAACAATTGAGACATGAGATCGACAAAGGTTAGTT
GAAATGTGCATAGGAAGTACCAGTATCAAGTTCAATGACCTCCATATTTATTGCACGATA
TCGTGGGCAGTCAGCTGAGCCAATATTAACAGCCGTGCAAGGATTAGTTATGGTTGATTT
CCTTGATGTAGCCTGTAAGCTTCTACTTAGCCCAACCAGGTAGACAGAATCTCCTCGGCG
CAAGGCAGGCTCTACATATACATCCAAAATGGCAAAAAACAAACCGGTACAAAAAGGTTG
TTAAGTCACTGGCCATATTACTTGATACTTTGTGCAATTTAGTCTCTTTCTTTGACCAAA
CAATATACTTTTAGGAAATAAGTAGAAGGGACACTAAAATGAAACAAACCAGGAAGAAGC
TTAGCAGCCCGAATAACAGATGCACCAGCTCCCAGTGCAGAAGGATCATAGGCAACCAAT
GCAAAATTATGAACAGGATGCAGAAAAACAACCTGAAAACCAAAATTTGGAAGCTACTAT
TAATTGAAATTCAATATGAACAGGATGCAGAAAAGTAACTTGAAAACTAAAATTTGGAAG
CTACTATTAATTGAAATTCAATATGACATGGATTTAGTCGACAAAATGGGTGCTGGGCTC
ATACCTCTGCAGGTATTTCAATGGGATATGCAGCAAAAGAGAGCATTATATCAGAGATAG
ATACAGCAACTGTATTCCTATCGACGGCAACCAGACCTAGACAGTCAGAATGATATATTA
TCACGCCAGTTCCAAAGAAATGTTGAGAATGTACTCCATCAAGCATGCATATTGGTGGCA
CATGCACCTATAAAATAGTAGAGATACAGGTGAGTCAGGTTCTGAATAAGCACAAATAAC
AAAACAGCTGAAACCAACAATTGCTGGTTACGATGTACTGTAAAAAACATAGCAACAGTT
CATTCACCAGTCCAAGAGTAAAGAGCAAAACAGTAGATATGCAAGTAAATGAGAGAATAA
AAATGACTTAATAATACCTCAGTTTTCTCTCAAACATTGTCGTCATCAAATATTCAAATA
AACTAAAACAACGAAATAAGCATAACCTTGATAGCTCCTCAAATTTTAGATTTGAGCATA
ACACTCACCTCAAACATTACAAGAGCTGGCTCAATTACTTGTTCTGCCAATGAAGCATTA
CTTGATATTGTCTGAGCAAGGTCAGAGCCTTCCATACTAGAAGGATGCCTCAACGCACCA
TCTTTTATGTCATCTAAATCTCCAAAAGATGATATAGTTCCCTCAGCAGCTATCTCCTCA
TCCACCCGGCGCCTTTTTTTCTCAATGATAGAATCTTCGCCAGAGTGGGATCCATCTACG
GCAATCTCCTCATCTGTTTGCATTTTTACGCATCCATCTGCCGTATTTTCAGACTCATGC
TGGCATTTGAGATCCATAGGACTTGATTCAGTCAAAGGTGAAACAGAATTTAAGTTTGCG
TCCATATGGCCAGCACGATGAGAAACTACAAAGGGAGATTCGAGCGGTATAGCCAACTTT
GCATTCCACAGACCAGTTGCGTCATTTCGAGTGTATAACTGAGGAGGCGCATACCACCCG
TGTTGATCAATTGTCACCAGTACAGACTGAACACATAAATAAGACGAGGGCTTAGTTGTA
TATAAAACTTGACATTTACTAAGGAAGGTTTATCATGATAAAGCTCCTAAGGAACATCTT
TGTACCTTGTTCCGATAACGGTCAGTGTACTTGACATATTCGAGAGGCACTCGTGCTCCC
CTAGACAGCTTTGAAATAACTGCAATAAGGTCATCTAACTTTTCAATATCCTCTCCCGCA
AACTTTTTGATAATTGAATGGCGTGGAACCGATGCCCGAGAGAGCATGTACCTACATTGC
ACGGTGTTGAATAAGTCACAGAAAAGGATGATTGCTTTGATATTGATATACATATTTGGA
CAAAAAATGACTAAGAAATGCATGGTAAAAATCACTGAAACTTGGAAGTAAAGTGACCCT
GGAGACTTGAAAATGAGACAATTGGACAGGTATAATCTTCAAGTAAATGACTCTGGAGAC
AAGAGGAGCAAATGAACATACGTTGAAGATTACAATCTTTAGGAACATTGTGATACTCAT
ATTTAGTTGGCAAAATGGCACCTTGTTGGAATTCAAATGCAAGGCAATTCTACTAGTCCA
TTGCAAAGTGATGTGTCCACTGACTAAGATTGATAAAGGACTGGCTAGAATCACCACTAT
ACGTCAATAGTTCTTTCAGGAAATGTAATGTCAACAATTATGGCTAGTTGTCTTACCCTG
CCTCCGCAACATATACGAGGCCACATTTGAACCGGAAGTTTCTAGCCTGAAACGCGAGAT
GAACAACATTAGTACCAGACTGAAACTTAAACATATACTGTAACAGCATAGGTTCATGTA
GTTTAATATAAGTTTGAATAGGATGAATACATGATGTTATCATCAGCCCAGTTTCGTTTA
CTGAACACATATGGCCACAGTGGCGAGATTAACATTTCTAGCAGAAAAGTTATACATGTG
GCCATTCGACATTTGACTCAAGTGGAGTAACTGTGATTTACAGACGTAATAGGGCAGAAA
GCTCAACACTTAAGAAACCAAAGTGCAGCCAGTCAATAAATTAAACATTGCATAACAATT
TTGCTCTACTCGTATGGTTTAAGTTGTATACAAATTATGGTCTCACAAACAACATAAGCA
TGAAATAAGGAATATAGTATCGCTGTCAAGAAAACATGGGTTCAACAAGCTACTCGAGCC
CAGCTAGTGGAAGCTCAATTCAGGCCTGGCCTGAGCTCATGCTATTCTCAGGAACAGCTT
GTATCATACTCTGTCCCCAGAAAGATCTTTAGGCCCTGTTTGGTTCCAAATAAGTCACCA
ACTTATCTCTCCCTAATAATAAAGCAAATTGGGTTTCTGGTCGTCCGTCATTTAAACTGC
CCCGAAGTTGGCTAAAATTACCCACCAATGCCATCCATAAGTGAAAAAACGGTTCGGACC
TTTTCTGTCAAAATCGTCGTTGCCTAAGGTTATTAAGCTACGAGAACTTAAACGGTCATC
AGCGTGCTCGCGGTCTGATGGCCAGAGCGCTTGTTTTCCTCACAGCTAACCCAGGTTCGA
TCCCTGGTGGCCATAATTTTTGTCATCCCTATTATTTCCCTTGGTATAGCAGCAAACATG
GGTTAATGGATCAGCCCATGTTTTATTATTTCAATTTTTTTCCTTTAAATTAATTCGTGA
TTTTCAGAAATTCAATTTTTTTAGTTTTGAAAAAAAAATGTTCATGAAATCATAGAACGT
TTGGACGTTTAAACAAAGGTTCAGAAAATCAGAAAATGTTCACGGATTCAAAAAATGTTG
ATGGTTTCAATTTTTTTTCCTCGTATTATAAAATAATGCATAAAATGTCTATGAATTTTA
AAAATGTTGAGAAAAACTAAAAAAATTACGAATACCCAAATTAGTTCCCCATTTACCAAA
GAGTTCATCGATGCAAAAAATGTTCACTGAATAAAAAACTGTCCATGCATTTCAGACAAA
AGATAAGTATACATCAATCGACAAAACTTGATCGCATGAACAATATTTTCCTCTTTTTAT
AGCAGCAAACACGAGT