Map Locations of contig_274546 (9240 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_274546

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44328 4 3628 bp AK375151 Available Available None





CDS Structure of MLOC_44328






Contig Sequence (9240 bp)

>contig_274546 9240 assembly3_WGSMorex_rbca.fasta
ATCCGCAGGCGCGCGCGGAGGGGGCCCGCCGCGTCCCCCCTCCACGGCGGCGACGACGAC
GTGGATCGGGTGAGAGCTCTGCTACCCGCCCTCTCTATGCTTCTCCTGGTCAACGTCGGT
GACGTCGCTGGTCACTTGCGGTCTCTTGTTATCATTTTTCTGCTAACAACTCCATACATA
TACATTGGCATCATGTCATTGTCGCTGAATTTTCAGTGGATCAATATGTTAGAATTTGTT
CCTTCGGCTTTTCTGCCCCATCGACATATCATATGCCGCTGCTTCTTGAGATTTGGCTAT
TTCGGACCGCAGCGTGCCCCTTCCTCGGTTATTATTTTCGAGCCAGAGTTCAGGTCCTAA
AATCTACTAGCACCAAACACACCGTCGTTGTTCGATTAGCCTCACTCCGAGATTTCCACT
ATTTTGTTCTCCACTTTTGTGCTATTGAACTGTCAAAAGTCAGGAAGACAAGAAGTAATG
TGCAATAAAGCCGAAATCCACTGCTGTCACAGTATATACTTGTACCCTCATTTCAATTGA
GGGCGAGCTCGTACATATTTTTGCCGCATGAATCGGGCATGTTTAGTGTTAATGTGGTCC
CCTGGCCATTTGCCATTGGCTGTGAAATTTATCACTCAGCAGTTGCTGCAACAGAATGGA
ATTGGGACTACCCTTCTTCTAGGGGAATTTGGAGTACGCTTTGCACATAGAACCTGCAAC
TAAATACTCCATCCATTTCTTTTTCTCCGCATGTAAAGTTTGACTGAAGACAAATCTTAT
ATGCGAAGTAAAAAAGAAACGGAGGGAGTACTGGTGAAGTTTGACTGAAGACAAATCTTA
TATGGCAGAGGTTTTCTGATTAGGAAATATTCTTTAGGATCCCCAAGTTCTTTGTTTCGT
TTTGAGAATATGATCGGTTGCTTATTATAAGATCATGCAAAAGCTAAGGAAAAGACGTAG
AATACTAAAAGGAAAAACATCCAGGCGATCATTCACAAATCACGGACAGGCAAAAATTTC
TAGCAGTCCTATGCATTCTAAGTTCTTTGAGATGGACTTGATGTGAATTTCTACCTGGCA
TTTGACTTGCATGATTGATAACTGTGATGACTGTGATACTTTTTCTCGACATTCTCCCAA
GAAAACTCCAATTGTGAAGGTGTAAAAATATATTGTACCGTTTGGGATCTTTGCCATAAA
ATTTTGCAATTTTAGTTTACTTCTGAGCTAAAAAATATGCTTTCTCCTTGTAATTACTCC
GTCTGTTCCTCTATATAAGGTGTATTTGTTTTTTGAAGAAATTCCAGAATATAAGGTGCA
TTTCTTCCAATTCCCCATAATTCCCTTGTTAGCCCTCCTAAAAAAAGGAAATTATCTCTT
TTTCTATTGTTTGTATCTCTCCTTATAGCAAAAGAGGGAAAAAATCTCTTTGTCGAGTGC
ATGTATCTCATACTTTTCTGTACTGATTGATTAACTTTCCAATAACCAACAAATTTGCCA
AGGGTAATTTAGTCTTAACATGTCTATAATTATGTGCCGTGGTCACCGTGTGGTCACCGT
GTCAATCACCGTGTCAAAAATAATACACCTTACATAAAGGAACGGAGGGCTTATTGTGTC
CCCACCATGTAATGATCACAGAATATATATACGAAAACGCATCTGCACTTCATGTTCTTC
TAAATTTTCTTCCCCTGACAAAAGGGAAAACACCCAGCTTCTATTAGATAAACCAAAGTA
TAGCAAGGTATGTATGGAGAGAAGTGTCACAGTAATAAATGGGTAGCATAACCATGTAGC
GGTAACAAGAATATACCGAATGAAAGGGTAGAGGCATAGAGAATATACGAGCTTGCAGTC
CCAAGACTGGTACAGCCTCAAAACTTTATGTTCCGCGCTATCTTTCTCTTGAAGTCCAAG
CGCCATAAAGGCACATTTCCCTACGAAGCACACCAAAAGGCTTCTGCCCTCCATAATGCA
ACCTGTTTAGGATTTATTATGGGATCATGTTCTGTTTTTCTTATAGTGATGCACATGCTC
AATCAATAGGATCTTACGATTTTAAGTACATAAGTTTCCAAAGGGAAATTTTAGCTAGCA
GTCCCATAATTCAATGGTTTCAGATGTACCAAACTCATGCATGATTCTCTTTGATATGGC
GCCAACTAGGATATCATGAATTGAATGATGCCTCCTGAACTTGTTTTGGTTAAAGGGAAC
AATGCTTTCTCTTGTAGGTGCCAAAGCTTTTAAGTTCTTCTTTTGTTTCAAAAGCTATGC
ATTTTGAAATTTCTTAAGTAATTTTAATGGAGAGTCATGTTTTCTGTTGGAAGCTTCACA
TCTTAGTGTTTTGTTATTTACAAAGCCATGAGTTCTGAATTCCATAACTTACTTCCTCTG
TTGCATCTCAGCCACATATTTCAGGTGGCTGTGGTAGGGATCTTTCAGCACCATTGATGG
AACATGAAAAGTTACATGAAGATCGATGCCATTCAAGGCAGTCTCTTTCTCCTGCAAGTT
ACACTAGCTCAATTGGGGTATGCACACACATGACAAATCCCTTTCCTCTTACTCATCTCT
TGGTAATTTTGGTGTTTTAGTTGTCGTATCATTATGGAGTCAATTTAGCATTTGAATCTG
TACAAGAGTGACTTGCATGCTACTATGTTTGTTGCTTATTATGCATTATTATCTCTAGAC
TGGAACGCCAATATTATTTCTGTAGTTTGCATCAGCCTTTTCTGTGTGATCATGCATGGT
ACTGGTAGTGCCATTTTTCAGGAACCAATTCATAATCATATGCCTGTTTTTCTCTGTCGC
CAATGAGGCCATGTTGTGTAATTGGTTTAGTATTTTGCAGCTATAAACATCGGAAGAAAC
ATGTTTTTCACAATTGTATTTGTCTGTCCGTTCATTAAACAGGCTGCTACCATAAACCTC
GTCAGTCCTACTCGGTCATTGAATTTCCGGGATAGATACAGGGATGCAGGTTGCAATCTT
AAAACATCAACAGAGCTATTGAAAGTTCTGAATCGTATTTGGAGCTTGGAAGAACAGCAT
GCTGTTGATGTGTCAACCGTTAAGGGACTGAAATTGGAGTTGCAGAATACACAGGCACGT
GTTCAAGAGCTTACACAAGAAAGGCAGCGATATCACTATGAAATTGAGTCTCTGGCCAGG
CAAGTCACTGAAGATAAAATGGCTCGGAAAAATAAGGAACAAGAGAAGCTTAGAGCAACC
CTTCGTTCACTGCAAGACGAACTTGAAGCTGAGAGACATCTGAGGAAACATTCTGAGAAT
CTCCACAGGAAGCTAGGAAAAGAATTGTCTGCGATGAAACCAGCATTTCTCAAGGCTGTA
AAGGACCTGGAGAAAGAGCAGAAAGCAACCCGCCTGTTGGAAGATCTTTGCGATGAGTTT
GCGTTAGGAATCAGAAACTACGAAGAGGAAGTGAGGGTGTTGAAGCAAAGGCATGTAAAG
GAGTATGAACACAAGACTGATAAGCTGGTGGTTCATATTTCAGAAGCATGGCTCGACGAG
CGAATACAGATGCAAAATGCCGATGCCAGGGGAGATTCAGAAGGGAAAACCTCAATCACG
GAGAGGTTGAGCGGTGAAATACAGAGTTTCCTTCATGGTAGAAGATCAAGCAACTTATAC
GGCGTTAACAAACATACTGGTAATGAGAAGGGGGATGCAAGCTTGTGTCGACAGTCCCTT
GAATCTCTGCACCTAAATGGAGCCACCAGTGCCCCTCAGTTAGCTGAAGATGATGAAAAT
TCCGTTGCTAGCGACTTGCACTGCTTTGAGTTGGACATGCATGGAGACGCTGTGCAGACT
CATGAGCTCGCAGGAACTCGACGAACAGTCGCCGACTGCATGTATTCACCAATGAGAAGA
CTGGAGTTCTCCGATGGTGTGTCGGTTGAGGGCTCAAGGATCTCAACCGCAAGGCCTCGT
TCAGAAAAAGGCAAGGTGAAGCCAAGCAGCAGCAAAGCACAGCTGAATACTTCGACACCA
GAAATCAGCTCTCGCAACTGCGACAAGATCGATCCCATAGATGAGCAGAATGAAACGGTC
ATGACCCAAGTTTCTCGGCGGTTGCACGATGACCTGCTGAAGATCAAATCAGAGGCTCCT
CAACATGCATTTCTAGAGCGAAAGCCCCACGACCATCATCCCCGGACGTATCAGTTTCGT
GAATGTGCTACTTCAAGTGATCTACTACACAATCTGCACAGTCCAGCCCGGCAGCTGAAG
AATCATCAACGCGCGTCGTTAGACTACCAAAGATCTGAATGTGCCACCACAGGTGACCTA
CTCGGGCTGCGCAGTCCATCCTGGCAGCTGAAGAATCAGCGCGCGTCCTTAGACTATCAG
ATGTCTGAATGTGCCACCACAGGTGACATGCACAACCTGCGCAGTCCATCACGGCAGCAG
AAGAATCATCATCGGTCGACGTTGGATCATGAAATATCTGAGTCCTCGCCGGCGCGGTCT
CTCGGCTCAAAAGACAATACACTTAAGGCGAAGTTACTGCAAGCGAGGCTAGAGGGGCAG
CATGCCCGGATTAGGGCGTCGGGCTACCCCTTGATCAGCACAAGAAGGAAATGAGAACAC
TGACTGGCTGAGCTTCCCTTGGGCTAAGCTTCCATGATGTAGTTTCCTACAGCATGGAGT
TGGCATTGTAAGATAAGACATCTGACTTAATGTGCTTAGAATTTCATGCGCGTCGTCTCG
GGTCGTGGGATGTGTGGAATTTGTAGCTGCATTGGGGAAGTGAGACCCATTGAGTAGATT
TGCATCCTTCAGTCTCATCCGGCTATAATTGAATGATTGAATGTATGTAGTAGAGATGGA
CTTTCGGTAATCGCCTGTTGTTGTAATGTTTGTATAGTTATAGTATATGCGTCGGATGTA
GAAGTAGGAACCCGAAACCCCTGTGGCTAAGCTGATGGCTCGAAGAAAGCTTGAGAGCTG
TACTATTGTTCCCGTCTGCTTGAATTTTCAGCGCAATATTTGCAATGATGGTATGATTAT
GTTGATGAACGTGCACCAGTGGTAGTACGCACTTGATTCCACTGCTCTCTATTAATCGCG
CGGCAACGTGCTGCCAAAGAGCCGCGTGGTTGAGGTTCAAAAAATAAATAAAAGAGCCGC
GTGGTTGGCTGGGTACAGCAGCCAAAATTGTGTTTTTTTTGGGTGGTAGCCAAAACTCTC
CAGAGTTTTACAGGATAGTGTTAACCCAATTTTAGTTGGGGGTGACTTCAATATTATTAG
AAAAGCTTAGGAGAAAAATAAACCTGGTACTGCATGTCACTGGAGTTTTGTCTTTAATGC
AATAATAGGACAAGCTGGATTGAGAGAACTGGAATTGCATGGGAGACAATTTACTCCGGG
TAATAATCTTCCCAATCCAACTTTTGGAAAATGGATATTCCCTCTGTTCCTAAATACTTG
TTGTTCGGAAGAACTAAATTAGTTTTTCCCAACAACAAATATTATGATACAGAGGGAGTA
GAATTCTATGATGCGTTGAATGGGAGGAAAATTATCCCCTGGATGAAGTAAGTGCTTTAG
TGACGGAAAAATCTGATCATGCTCCTTTGTTAGAGAGGGGCTTGATAACATTATGACTGA
TATTTGGAATGATGATAAAATTGTTGGAATTAAGAAAAATGGCAAAAAAAGTCTCAGGCT
TCTAAGATCCCAATTGAAAGGGTGGAATAGGAATATGAACGCTTGGTACAGAGAACTTAA
AAATATATCTTATGTAAGTTGGATGAAGTTGTACACATTGTGAGATTTATGGCTTGAGGG
CTAAAGACAGACAAGAACAAATAGAACTTAGAGCCCAGCTGGATAGGTTATCGAAACATG
AAGAAGCGAAATGGAAACATATGGCAAAAATAGATGAACTCTTGGAAGGAGATGGCAACA
CAAAATATTTCCATGCCAAAGCTAATGGCACGAGAAGGAAAAGTAAAACCACTTGTCTAG
AGCAAGAAGAAGGGAGGATAGAGGGCGATAGAAACATTATTGACTACTCCCTCCGTCCCA
AAATAACTGTCTTAACTTTATGCTAGTTCTGGTACAAAATTATCCTAAGCGTAAGACACT
TATTTTAGGACGGAGGGAGTATATTATTACTGGATATCACTAGATTTTATCTGGACACCC
TGATAGGTCCACGATTACTCTAAATATAGATAATCCCAGGATTATTCCTAGGGATTCTAT
TGACAAACTGATAAATGAATTCTCTTCAGAAGAAATCAAAGTTGCTATGTTTGGTATGGC
ACTTAACAAATCCCCTGACCCTGATGGTTTTACTACTTACCAACATTTTTGGGCTTTGGT
TAAACATGACATCAAAGCCTTATTTGATGACTTTCACAAAGGTGAACTAGATATACCCAG
ACTGAACTATGAGATGATTACTTTAGTTCCAAAAAATATAGATGCTAATCAGATACAGAA
GTTTAGGCATATAGGTCTGCTGAATGCGATCTTTTTTTTACCAAAGCTCTTATGAATAGA
TTAAATGGTGTGGCAGGGGAAGTGGTAAGGGGTGCTTATCTTACATGAAGCATTGAATAG
TATTCACCGCAAAAAAACAAAGTGGAATGTTGTTTAAGATTGATTTTGAAATAGCGTATG
ATAAAGTAAAATGGCACTTTGTTCTGCAGGTGCTAACAATAAAAGGATTCCCAGATAAAC
GGATAGACTGGATTATGCATACCATTAGGGGGGAGGGGGTAACGTGTGTATCAAAGTAAA
TGACAATTTAGGGACATATTTCCCCACTCATGAAGGGTTGAGACAGGGGATTCTCTGTCA
CCCATGAGCTTTGATCTGACTGCCGATGCTCTGGCCATGTTGTTAGATAAAGCCAAAATA
AATGGTCTTATTAAGGGGCGCTACAGGAAAATATTAAAAATGGTATCAATATGTTACAGT
ATGCAGATGACTCAATTTTCTTGCTGCAAGACGATTATAACAACACACATAATCTGAAAT
TATACTCTGTTTATTTTGAATAGATGTCAGGTTTAAAAATAATTTTTCATAAGGGTGAGC
TATTCTTGTTTGGAGATGCAGTAAAGAAAGCTGAGAACTTGGCTCAGATCTTTACCTGCA
CTGTCGGCTCTCTGCGTATGAAACATCTTGGTCTACCTTCTGATAAGAAAAGAATTATTA
ATAAAAACTGAAACCCCTTGAAGATAGAATGGAGAAGAAATGCAGCAACTGGTAGGAGAG
ATTTCTTGCCAGTGCGGGCAAAGTGACTTTAATACAATCCTCGCTCACTGGCATACCATA
CTTCATGATGTGTTTGTAAGGATTGCCTGTGGGGGTTAGTAAGAGGATGGATTACGTTAG
AGCTAGGCTTTTGTGGCAACAAGAAGATAAAAGAGTATATCATCTGGTTAAGTGGTTTGA
GGTATGTAGACCAAAAGATATGGGTGGATTGGGACTTCAAAATTTGAAGTTGATGAATAA
AGCTCCTTTATGTAAGTGTTGGTGGAAGGTCTTTAGTATTGGGGGGCTGTGGCAGGAAGT
ACCGATGAGCAAGTACGGTAAAAACAAAAGTCTAACTGAAATTAAACTTAAACACGGGGA
TTCTCAGTTTTGGTCTGAATTAATGAAACATAGAGACCACTTCCTCTCACTTTGTAAATT
TGAGATTGGGAATGTGGAGAATGTAAGGTCTTGGGAAGATTGGTGGATTCGAAATGAACG
CCTTAAGGATAACTTTCCTAGATTGTATAATTGGTGTTTTGATAGAATAAGTTGATTAAA
AAAAATGCTTGATAAAGGACTAGAATCAGTCCTTTTTAGAAGTAGTTGAGGAATTTGCTA
AGTGACGAAATACTAGCAATGGAATAAGTACTCTCAAGTGCATCCATGATGGACCAGTAG
CATAGTGATCATGATGAAATGAAACATACACAGAGCACAAGTAGCGTGTAAACAAGATAA
ACAGGTGAAGAACAAGGTGACTGAAGAATTTGGATTTAGGAAATTGAGAAAGCCTTCAGT
CAAAGTCTTCAAACAATAACGATCAATTTCATGAATAAATTAACGAGGAAATGAAAGGGT
TGAGGAAATAGACCCAGTTGTTCGATGAAGACAATGATTTGGTCTACCAGTTCCAACTGC
TGTGAAAGTTGTACGTCTGATTTGGGGTGGCTTAGTATTTAAACCAAAGGACCCACAATC
CTTACCGTATTCTCATTGGGCTAAGAACACACAACCCTCGCCAAACACTCGTGGTAAGTC
TTCAAGGTATACTTCCAAACCTTCACAAACTCGGTCACTCGACAATCCACAATTTCCTCT
TGGATGCTCTAGACCCCGACGCCTAACCGTCTGGAAGACGCATGGTCTTCAAAGGTAACA
AGCGTTGGTTTCACACAGGAACAANNNNNNCAAGCGTTGGTTTCACACAGGAACAATCTC
TTCANNNNNNCTCAATCACTTTGGGTTTTAGGTGTTGGGTTTGGGGGTTTTCCTCACTCA
TGATTTTCACTCAAAGCCCTCAGAGGATGGGTTGCTCTCAAATNNNNNNTGTCAATTTCT
CTCTCAGAGCAGCCAACCAGCTAGTGGTTGAGGGGGCGGCTATCTATAGCCAGGGTGAAA
CCTCACATGATAAGACATAAATGCCTCCAATGATATGACCGTTATGTGGATAAGATATTT
CGGGACAGTTGGCGCTAAGCACAACAACGATCGGAATTTCGAAATACGAAAGTACTCAGG
GCTATCATGTTCCTCGCGATACGCAATTCATAGTTTCGTACTGGCAAAATCCTAACTCAG
TCACACCAATTTCCTGAGAGACTAGAAGAACTTCGTCTCTGTCACTAAAGAACTTGACTG
AACTGCAAGAGATTTCCAAAGGCTTCACTTGAAGGATTGGGTATGTGTAGGCTTTGAGAT
GAGCATCACTTGGAAATTTTTCCTTAGTATTACCTTGACCCCCTTTAACAGTACGATGTT
CCTATGACTCAAAAGAAAGGAAATGAAACAAGAAAACTAAAGTCCTCACACTTCATAATC
TCGCATCAATATCTTTAAGGACAAACCAATTTCCTCATTTTCAAAGTCTTCAAGAAAAGC
ACCAAAGTCTTCAGTTGAAGAGATTCATTTTTAGGGATCGGTATTCGTCGGATATATCAA
ACTCCTCAGCGACTTATAAAACATGTGTATACTTACAAACACATTAGTCCCTTAACCTAT