morexGenes - Barley RNA-seq Database

Contig contig_274294
Source Contig contig_274294
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_274294 (7687 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_274294

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44165	1	414 bp	MLOC_44165.1	Available	Available	None
MLOC_44166	1	896 bp	AK354202	Available	Available	None
MLOC_44164	3	1899 bp	AK375673	Available	Available	None
CDS Structure of MLOC_44165

CDS Structure of MLOC_44166

CDS Structure of MLOC_44164

Contig Sequence (7687 bp)

>contig_274294 7687 assembly3_WGSMorex_rbca.fasta
GCGGCGGCGGCGACCCCAAGCAGGAGGCAGGGGCCAGCGAAGGAGGCGGCGGCGGAGGGG
CCAAGGGGCCCAGGTTTTCTGATCTTGGGGGGATGGAGACGGTGATTGACGAGCTGATGA
TGGAGGTTGTGGTTCCCCTGTGCCACCCGGAGCTGCCGCTGCGGCTCGGGGTTCGGCCTG
TGGCAGGGATTCTGCTGCACGGGCCGCCGGGCTGCGGGAAAACCACGCTCGCCCACGCAA
TCGCCAACGAGACTGGCGTGCCATTCTACAAGATATCGGCGCCGGAAGTCGTATCTGGTG
TCTCTGGTATGCAATCTGATTTGATTCATTGCGCTACAATTTGCAGATGCTCTGAAATTC
TGTGTATGCATATGCAAATTAATTTGATATTTACCCATCATGTATCGTGCTTGAAACAAG
TGAAATGCAACAGTATTTATGGAGTGATGATTTTGGAAATGTTTCACTTGGGGTTCAACT
TGCAGAATACCAAAGCCCATCCTTGGTCAATGAGCAAAATTTATACGTACGTGTAACTGA
TGAACTCTATAGATGTTAGTATTGTGTAATTCAAGCTTGTCACTATATTCCACCTAGAAA
TTGAAACTGCTGACACATGATAGCTAGCGATCGAGTTAGTATTGTGTGCGAGTGATCTTT
AATTCAATATATCTTATGTTCTACTGTGAAATTGGTTTTTACTGCTTTGAATGATTGAAC
TTAGTTGTGGTAGTGAAACTCCCTCCGAGGAAAAAAAGTTGTGGAAGTGAAGCACGTGTC
CAAGGCTCCAAGGGTTGCTTTATGCATTGCCATTGGCCAATAGTTGGGCAGATATTTCTC
AAGAACTATATAGTGTTTATCAGGGCATTATACTTAAAAGGGTAGTGCACGGCTTAGATA
CATGGTGAATAGCCGAGAGCTAATTTTATGGATCCATCTTCCACCTGCCTGGATTAAGTA
AAGAATATTTTTTTAGAGGTGCTTTGATGCTCTCCTGGGAAGTGAGAAGATTATTTTTAG
CATATCAGTAGAGTACAATTTGCAACCACCACTTCCCAGTACTAGCGAAATAATAACAAT
ACTGCTTCATGAACTGAGCGTGAAATTTACACTGAAGGAGTGCATACATGCACTGTTCTA
AGTTGTCTCATTCGCCTTCAATGGTTTTATATTCATCTCTGCTCCTAGTTAAATTTTATC
TGTCAGACCAATTTGGACGTTCGCCTCATAATTCTTGTACTCGTGCAGGAGCTTCTGAGG
AAAATATCAGAGTCTTGTTTAAGAAGGCGTACAGAACTGCTCCCTCAATTGTATTTATAG
ACGAGATAGATGCAATTGCGTCCAAGAGGGAGAATTTGCAACGTGAAATGGAGCGGCGGA
TAGTTACACAGTTAATGACATGCATGGATGAATTCCACCAGAATGTTGGATCGGATGGTG
GTGACTTGGACTCGCAATCATCTGAAAAGAAACCTGGCTATGTCATTGTCATCGGAGCTA
CCAATAGGCCTGATGCTGTTGACCAAGCGCTTCGGAGACCAGGGAGGTTTGATCGAGAAA
TATCTCTTGGTGTTCCAGATGAGATTGGACGGAAACAGATTTTGAAGATGCTTACTCAGA
ACCTAACACTGGAGAAAGACCAATTTGACCTGTTCAAGATAGCAAGGGCTACCCCAGGAT
TTGTTGGCGCAGACTTGAAGGCATTAGTAGATAAAGCAGGGAATCTGGCAATGAAGAGAA
TAATTGTTGAAAGAAAAAAACAGAGTGGTGGGGGTGATGTAAACAGCAAGCAGGACTGGT
GGAGACATCCTTGGAGTGAAGATGAGATGGACAGCCTGTGTATTACTATGGATGACTTTG
AGGTAAGCCATACATGGTCATTTTTTCTTTCTTCTATTAACCAGCTGATATCTGATCATA
CATTATATCATTTTCATTGTCTGTTGTGTACCATGTTTCCTGTCCTTTTGTCCTCCTCTG
CTATTAGTTTTTTAGTAGTGTGTTCCATCTTTGACGTGCTTTCTTACTTCAATCCCTGAA
GGAAGCAGCCACAATGGTTCAACCATCATTGAGAAGGGAAGGATTTTCTTCTGTGCCTGA
CGTCACATGGGAGGATGTTGGAGGTCTTGATTCGTTAAAGAAAGAATTTGACCGGTGCAT
TGTTCGTTGTATCAAGCACCCTGAAGTTTATAAGGTAATCACATGGGCTGCATTGTACAC
TACTTTCTTCTGTCTGTTACGTATTATCTGGTCAATTGGTCATCATAGTAATTGGCAGCT
TACAAATTTAAGCCATTTCTGAATTTGTACTGAAGGTAGTTCATAGACATCTGTGGTTCT
TATTTGGATTTTATAAGGTGTAACACTTCATGAATGCTTAACATGCTTAATTTTGTTTCC
TAAAAATATTTATTTTGGTGTTCATATTCTCCTTTTGCTGTCTTCCTTTCAAGGATTTCG
GAGTGAACATGCAAGCTGGGTTTTTGCTGTTTGGACCTCCAGGCTGTGGGAAAACTCTAA
TAGCAAAAGCAGTTGCGCATGATGCAGGGGCAAATTTTATTCACATTAAGGTAATTGATT
ACATTTCCGTATTTTTACACTAATTTCTATCGTGTATAGACTGCTAAGATGTTCTTTTTT
GCTGGAACTTTAGGGGCCTGAGCTACTGAACAAGTATGTTGGGGAGAGTGAATCAGAAGT
AAGGAAAATATTCACCCGTGCAAGGATTAACTCCCCATGCATCCTATTTTTCGACGAGGT
ATTTGTTTAGCTGTTTGCCTATTGTGTATTTATTCTTGAGGAAAACCCGGTAGTTGCTTA
GAACAATTATGAATACTTGGTTATCTAGCAAGTTGCAGCAAGTAGTCAAGCAACTTGCAG
CAAGTAGTCAAGCAAATTGTACCTGTTGGGTGTGAAAATGGGTTTCCAATTATACCATGC
TCAAGTGAAGTGTTTATTCCATGTGACTTGGCAGATAGATGCTCTGACAACAAAAAGAGG
GAAAGAGGGAGGATGGGTTGTTGAACGCCTCCTAAACCAGGTTCGAGCGCTGTCTTGGTC
ACAGATGTTTCCAATAGAGATTCTCCAACTCCTTTTCTTTTATTTGTCCTGTGTTAATCA
ATAATCAAAATGCTCTGTTTGCAGTTACTTGTTGAACTCGATGGTGCAGATCAGCGTCAT
GGTGTTTATGTTATTGGAGCTACGAACAGGTACTGTCAGCTACCGCTTCTTTGTACATGC
TTATACCTGAGTGTAAGATTCATACTGCTGCTTTATTTCTGGTGCAGAATTGATGTTATA
GATGAGGCTGTTCTACGGCCTGGTAGATTTGGGAAGAAACATTTTGTACCTTTACCTGGT
GCTGATGAGCGGGTTGCGATATTGAAAGCACATACTGAAAAGAAAACTCTCTCGGAAGAT
GTTGATTTGGAAACAATTGCACGTCGAGAGGAGTGCAATAATCTCACTGGTGCTGACCTG
GCATCACTGGTGAGCTTTCTGATTTTTCCTCGAGGAGTCCCCCTGCTGTTTGAGTTTAGT
GAAAGCTGCGCAACTGCTTGCTTGCTTGCTTATGTTTCGGGGATGCTTCCCAAGCTCAAC
GGAATATCTGTATCAATAGAAGTGTCCATCTGTTTGCATACAAAGCATCTGATTTAGGAA
GGTGCAAAATGGAACTAACCTGTTTGAGCATGCCTTCCTTGTTCAGGTGAACGAAGCAGC
CATGGCAGCGTTGGAAGAGAGGTGCGAATTCCTGGCGAAAGGGGACTCGTCAATGAGTAC
TGACTTGACTAATAAGATAAAACTGCAGCACTTTGAGCATGCTCTATCTAAAGTAAAGCC
CTCAGTATCAGAACAGGTACTGTAAAAATGCTACAACTTGTTGATCTTACGCTAGTACTC
CCTCTGTTCACAAATATAAGATGTTTTAGATATTTCAATATTGAATATGAACTACATACA
TACTGAAATGTTCCACTGTGGTTTATATACATCCGATTCACAAAAGAGTTAGAACATCTT
ATACTCCCTCCGTTCCTANNNNNAAGTCTTTTAAGAGATTTCACTAAACGTCTACATACG
AAGCAAAATGAGTGAATATACATTCTAAAGTATGTCTATATACATCCGTATGTAGTCCAC
TGGTGAAACCTCTAAAAAGACTTGTATTTCGGAACGGAGGGAGTAGTTGTGAACGGAGGG
AGTACTCCACTGTGGTTTATATAATACTATCATACCACCAACAGATTTACATCTCTTGAT
GTTCTTGGTTGCAGCAAAGGAAACACTTCGACGCGCTGTCAAAGAAATATTCAGCCAACT
GATCCATCGCCGTGCTTACAAGGACCATACTGTAGCCTTGTTTCTACTTCCCCTGTTCCA
AAATAAATGTCTCAACCTTGTACTAGCTCTAGTATAAAATTGTACTAAGCCTCTAGACAA
TTATTTTGGGACGGAGGAAGTATTATTTTTGCTCATACCATAGCTTGGTGTAGAGATTGC
GTGTGCTGACCCTCTACACTAAAGCTATGCAATTTTGGTAGTGAGGGACTTGTTTTCGGT
GTTTGGAAAATATGAACTCGTTATGCTTGTTGTACGGCTTTTACCGGTGCTCCGTCCCCT
TGTAATGTTTTGAATTGAGAAACACGGAGAAACTTTTTGTGGACTGAGCATTCTTGATCA
ATGCAGAATTCTTTCTCTTATTGGAACCTGATGCTAAGGCTCAGTCGGGGCTTTTTGTCG
ATAGATGCAATGAACTATGATCGTATAAATGGCACGAGCAGGTTCCAGGTGAATTACAGT
AGAGGGCAGACCAACCACCGGGCACCACGTTGAAAATCTGAAGTGTTTCCTATCCAACTT
TCATTTATTATTGTGTAACAAAGAAAAGGTGGAAGCAGAGTAAACATCATCGATTGCAGT
TATAACATTCCAACCAACAGTATACCCCTCCAGAGTATGCCAAATGCGCAGACATAAAAG
ATGGATGCATGGGACACTATTTATTTTTGGCAAGAATATATTGAAACATAGAACATGAGA
TGAAAAATGTGTGAAATATATTAATAATAGCATGTATTTTCTCAAAGGATAGTATAACAA
AGCTACACCTGAGGCGCACCGATTCCAACATAGCTGCAGCATTTCATGTCAATACCAATT
GAGTAGATGTCCGTGAGTAATTTTCCACTGCTCAGGAATGAGTTTTATTGTCGTACTAGT
CTGAAAATCTTCATTCCTTATTCTGAAACCTAATTTTAAGACAAATCCACAAATGAAGGA
GGCAAAGAGTAAACAAGAGAAATAGAAGTACATAGAGTCATAGACAGATAAAGACTTTTA
AGTAAAAAGAAAATGGTCCATTTCTCAGTAATTAGAAGTAATAAACATCAATCCCATTAT
TCTGAAACCTAATTTTAAGACAAATCCACATATGAAGGAAGCAAAGAGTAATCCCACAAG
TCAAAGTAGCACCAATAGAAATAGTTAGTCCTGAAGGGTAACAGTAATTTCAGAAGCGGA
TTGAAACTCTCATAATATCTCGGAAACCTGCATTGCGAAACAAAAATCAGTTTAGATCAC
AAGCGCTCACTGTATTACTAGCAAAACAAATTTTAACTGTTACAAAGAGTTTATTTACAT
GTATTGGCATCTCCGCAATGACGAATCCACCGGTTTCTTCCAGAGACTTTAGAAGAACTA
CCTCACCACCAACAACCATATTAATCGCGATTCCATCTGCACGATCATAGTACATCAATT
ACATCAGCACTTCCAAAAAGCGGATCAACTGATATTTTTTTAAGTTACCTGTTGCCAAGC
ATGCCGATACACGTCTCAAGTAAGCCTCCTGAAAAATTCAGGCACAGACATCAGGTAAGA
CGAGATGATCTACAAATTAGAACCAATGGTGCACAACGAAACAGCATGAATGCATGATAA
CACCGAAAGTTAAAATTACCATAAACAGCTAAGCGTATTTGGGCCATAGAAGTCCTGAAG
GTAAATTATCATGAAAAATTAGGACTGCTCACCTTCTTTGTAGGCAATTCATAGTTTATC
AGCACACGAGACATAAGGGGAGCCTCTCCCATCGCCGCCGAAGGCAAGCAAGCATCAGTT
ACAACTGTAATATTTAGCTTCAAGACCACACTTTCAGGTTTGGGACTTCCATCAATAGAA
GCAGCTTCAATCTGATTCCGCTGTATTGCTGCCCGACGGGATTTCTCAAGAACAGATGCA
CGCTCAACTTCATCTTGATCGCTGTACTGTGTACATAAATCCACACATTGATATTATTAA
CTAGCAAAAGTACTTCATAGCAAGGATCATGAACAATCAAGAGAACCTGAAACAATGTTC
ATATTATTATAGCAGGGGTAACAGGAAAGGCAAGAAAGCCAGGGATCATTGGGATAAATA
AAAATATCTGCGGTTGCACAATCATAATTCCTAGATGAAGGTGTCAATACTATCAATGTT
TTCTCTTGAAGAATTAAGCAATTAACAGTGCAAACTGTGTATATCATACACTTAGCTATC
CCACAGTTGTCAATGATGCAACCACAAAGTACATCACAGAACTGAACATGGAAATTGGCA
CCCCACCAACTTGAGCATACCAGCGGTGACAAGGACACGAAGGGGAGGTTGGCAACAGCA
GCACAGACAGCATCTAGCTCATCCCGGGATGAAACACATATGGCAATGGGCACCGAGCCG
TGGCGATCATATACAACACCTAGGAGCTCCAGTAGTGTCCTCTGCACACAAAAACCAACC
ACAGATTCCCAAGAATAAATATATGGTTCAATGTGCCCAAAAATGTACGTTAACAGGGAT
GTTGGACACGCACCATCTTGAACTGGAGGGGGTCAACGGCGAGGTAGAAATGGCGCCCGG
AGCTGGGGATGTTAAAGAGGATTCATAAGTAGGACGGAATGCACATGTGGCAGGAAGACC
AGGGCCAGGGATTATCACCTTGGGTGGGGTAGGGTCACCGCCAGGGAGCTAGGAGACGTC
ATCCCGTCCAGAGAGGAAATCGAAGCCGCGGTGGTGGAATATTCCTCAGCAAAGAACAGC
AGCGCAACCGCCTAACAGAGAACAGAATAAAAAAAGTAAGGGGCTGCAGCTCTACTTTTC
CTTGCTAAGCTTAAATCTCGCAATGATCTTCTGGAAATAACTTAATAGAGGTGCATAGAT
GGGAATGATGTGTATTAACCGCATGGTACAGATAAGCCGAATGGAGGTGCATAGATGAGA
ATGATATCGGAGAAATCGCACACAGCTGAGAGAGCATATATATGGAGAAATCGCACACAG
ATATCGGAGAACTCTTATTTATCGGGTTCTCTCTTGCTCAAAGCCTGTACCAGCATCTAC
CGAACCATATGATAAATATTTGCTTTGATGCATACACGGTGACCAAACCAAACCAAGCAG
GAGCAGATGTTGAGCATTACAAAAACTAATCAAGCAGTCACAGAAATTTAGCATGCAAAG
CTTCAGGTGTTGAGCATTACAGATTGATGCAATGAGGCCCATATATATTGGTACATTTTC
AGGTAGAGTCATATCCTCTGGTTTTTATTTTATCTTCTGGAAGGGATGGATTGATTACCA
GAGGACGACGAGGTCGAAGAAGGTGGCCTGTTGATGAGGTCCTCGGCGGAGCGCGCGGGC
GGGGGCG