| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_274287
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_44161 |
4 |
6604 bp |
MLOC_44161.3 |
Available |
Available |
LOC_Os10g42700.1, FRAME:+1, EVALUE:0.0, 13110.m04016 protein CS domain containing protein, putative, expressed |
| MLOC_44162 |
2 |
2664 bp |
MLOC_44162.2 |
Available |
Available |
LOC_Os10g42710.1, FRAME:-3, EVALUE:0.0, 13110.m04017 protein RCD1, putative, expressed |
CDS Structure of MLOC_44161
CDS Structure of MLOC_44162
Contig Sequence (9769 bp)
>contig_274287 9769 assembly3_WGSMorex_rbca.fasta
TGTGTCCTCGAGAGCATTTTCCTTTATATAAGAGAACTTTCAGGCTTGTCCTTTGCTAGA
AAAAGGATTCGGCCACCTTGCTGCACACTTGCTAGTTTTATTACTTGTTACTTCTTAGCA
ATTATTGTGCTACAAAACAATCTATCATTGTTACTCAGAGCACTTGCAGAGAATACCTTG
CTAAAAACTGCTTATCATTTCCTTCTCCTCCTTAATGGGTTCGTCCTTAATGGGTTCGAC
GCTCTTACTTATTAAAAGGACTACGATTGATCTCATATACTTGTGGGTCATTAATGGTAA
GTATGTATTTGGTGGACGACGGCGTGCACTCCCGTACCCACAACTCCACGGGGGTGGCTC
GGCGGTGTCGGTCCTTTCCTCTCAAGAGGCGGCGGGCTATGGTAGCGGAGGGAGTCGTCG
ATTTTGGAGAGGTTTCCGGCCACAAATGGGTTAGGGAGAACCAGTGGAGCGCCAGGAGCT
CGACGGTGAGATTGGATGGGGCGGAGGGGCACCGGAGTGAGCTTGGAGTGGAGGAGCAGA
GAAGCGATGCTCACTATCAGAGTTGTGGAAGAAGGTGTTCCCAGCTCTACTACAGAGCTC
CGAAGGTGGATTTGGAAAGGGGGAAAGTGAATGGTGAAGCAAGGGAGCACCGGGGAGTGG
CTTCTGTAAGCAAGCGGCGATGCCCGTGGTCAGAGGTTGTAGTGGGGAATATACCTGCGT
CCCACGTTGAGCTGGCCATGGCGCTGGCCTTCGAGGCCCGTATGAAGGTGATAAGAGAAA
GCAAAGAGGGACGGGACATGTCTAGGGCATTGATGGATACGAGGACAACGACGATGATAA
CATGACACTCTGCTTCCTGTGGTGGCGCTCAACCGTGTCCGGTGGAGCTAGCTGTTGGAG
GGAGAGAGGGGTCTGGAGAGGCTAGGTGAATGGTGGGGAGGTTGTGGACATGCATGGACA
TGGTATGACAACGTGTGTGGCCTTCTCCGACGAGACCCGAGAGGGTCAGACGACCAAAGC
GCAGTTTTGGCCATGCTAATTGCGTGGTCACCGCGTGCGCTAGCACAGGGGCGCAATCTA
GCTTGGAAGCCCTTGTGTGGGGTGTCTACTTGGCATCCAATAGCTAGTGTATGACACTGG
AGCGACTAGTGATAGCCTGGGTTGATCAGTTCCATCCAAAATAGTTGTTGAACAAAAGCC
TAGGCAAGTTACTCGGGTAAAATGGTGAAGATATTGGGGCTAGAATGTTTTCATATGTAA
CTAGGGTAGGAAGGAGTCTTTGCTAGAAAAATTTCAAAGCATTTGGACAAGATTTGAAGA
TAGTTCCTTCACAAGTGCATAGTTGGTCCACAAACTAGATCTTGATGTTGTGCTCACACG
TCTTGTTGTATTTTAACGAAATTTTGTGGAGGGAGATGATTTGGACATAGGGAGGCAATG
TAAAAGAAAGTCAACTTATTTCGGTACTCCTAGCTAGCACTTCCTTCACAATGCTTCTCT
GTGGACAGAAGCTTTGAGAATTTGTTGAAGAAGTTTGGCTAGGCAAATGAAGTTGAATTT
TGGCATGAGACAATAAAATGGCTAGGGTAGAATGCTCAAAAGTTTGAGGTCTAACAAGCA
AAGATAAATAGTACTTCCTTCACAAAGTACTATTCTAGACAAAATAGAACTAGGCAAGAA
AGGGTTTTGGCATATTTGGAGGTGATATGATCCCAAGGATTTATGAGAATTTTCTTGAGA
CTTATGACAAGGCAGAAATAGAAATTGCTTCACAATCTAGGATAGAAGGGACAGAATAAT
TAATTGAAACAAAAAAATTAGAGTTGGGCTAGAATGGAAATGGCATGACTTGGGAAAGTT
TTTGAAAGCTTTGATTGACTTGGGAATGGAAAGGGAAAATATTCCCAAGTTTTTAAGTCC
ATTAAGCCATTTAGATGAAAATCCAGTGCAAATTTCAAAGTTAATTCAAAGGAGCTTTTA
AAAAGAAAACTTGTGAATATGAGGGTGTCGCCCTCGTGCTTGTTTCTTGAAAGTTTAGAA
AAAATGTAACGCGCAAGTTTTTAAAAACATCGATGCCCCAACTACCATTGTTACCACTAG
TATCAAAGAGAAGGCTGGTGTTTGATCGTTTACTCTTTGTATAACGTAATACCGTGAACT
AGACTAGCTTCTCGTTCTTCTTGTATGTCTTTGTCTAAAACTCTTGAAGCCTAGTTATTG
CACGTCTAAATGACTCAATTAGTATAAAAAGAAAAAAAAAATCTAGATGTGTTTTAGCGA
ACCGAAAACTCGTCAGTTAATGGCAAACTTTTGCTTTAGTTTTTCAAAGGAAGAAGGGTC
GTCTCTTACGCTCACGGTAGTATAGCTAAGGCAGTCCTCGCCTCACACGCAGAGAGTGTG
CGCTCATGCTAGAATAATGGCGGCGGCCATGTCCATTGCAGCCACCACCTGCTGCTCCTC
CCCCTTCCCCGCAAAACCCAGCCGGCACATCGCAGCCTACTCCCGTGCTCCTCGCCTTCC
TCTTCCTCGGCCAGCTTGGCGCCGCTCTCTCCTTGCCGCCTCCTTGCCGGCGAGCCGCCT
CCGCCTCCGCCCCCGGACCTCCCTGTCGGCGTCTCCGGCCGCAGCGCACGACTACGAGGC
AAGCTAAGCTCCCGCCGCTGTCTTGTCTTTGTTCCCCACTGCTCCTGCCTGTGCACTTCA
TTTATCTTACCTTATCTGCTTCTGCGCGTCCGTGTGGGGTGAGCTACCTATCCCTTTTCC
CAATTCTGTCGCCTCACGGTACCACTACCGACACATGATAGCAATCTTGAAATCCCGACC
TTGGGGATACATTACTTGTACTTCAGTGTGCAGCACATGATTTCATAATAAACCCTGTTA
TAGGAGAAGAAGAACGCGAGGGGATTTATTCAGAAAACCAAAGTAGGAGTATATGCATTT
TGCTTTTAAGGTTTTCCTCAGTCTGCAATCTTGCTGATTCCCCAGCTATGCATTCCTGCA
AACGCATCTGCACACTGCAGTGCAATCAAACGTTAAGGGAAAAAGCATTTTACAGATCAT
TTTGTGTTTATCTGTTTGTGCCCATATGTTAACCATGAACACCACGGTAATACTTCCCTT
GTGAAAGTATTAGCCTTTTCTTTTTAGTCCGGAACCACATGTGTGCCTATCTCTGCGAGC
TCCTATAATACGCGGTATAAGAGGTGAATATCTGTTCGTTAAGGTACTGCAAACTTCCCT
TCTGTGAATCCACTCCAACCTTTTACTCCCCCCGTCCCATAATATACTAAGATGTTATTA
TAAACAATATTATAGGGAGTAGATACGATGTTGGAAAATATGCAGCTTGTCATGTCGTTA
AAAATAATCAGCTGAGGTTATTTGTATCTGTATAGTTCACCGATACAACCGGAGAGGTGG
AGCTGAGGCTGGACATAGGAAAGCTTGGCATCGAGAGTTCAAGAGATGTTTTTGTTGACG
TCGATGACACGTCCCTGCTCATCAGAGCCAAGTCTGACGGAACACTGAGGACTTTGATGA
ATGTCGGGACGCTATTCGACAGGGTTAAGTCTTCTGAGACGATATGGTATGTCTCGGTAC
TTCAGTAGCGAGCGGGCTCTTGCCTGTGAAGATTGATCTGTTGAATCATTTCACTGTTAC
AGGTTCATTGATGAGGATCAGCTGGTGGTGAACCTGAAGAAAGTCGAGCAGGAATTGAAA
TGGCCCGACATTGATGAATCATGGAAATCCCTCACTGCTGGGATCACACAGTTATTGACA
GGGATCAGCATTCACATAGTTGGAGATTCCACGGATATCAACGAGGCGGTCGCTAAAGAG
ATTGCTGAGGGCATCGGGTGCGTGTGCTTCACCGTGTTATTACAGAAGCTACTTGACCAA
TTGAATCCTTGTTTCTGCCGCGCCTTTCTAACCAATATACTATAGATACATGTTTTACTA
TGAGATAGGTTGCCACAAATACTATCACAGTTGTTAATTCTATAGCAGATGAGGATCCTG
AAATGTGTTTTGCTGCGTGTTTGCAGGTATCTTCCAGTTTGCACCAGTGAGCTGCTAGAG
AGTGCCACTCAAAAGTCCGTTGATACATGTACGTCGTTTTGATGCTAAAGCAATAGAACA
TACTCCCTCCGTTCCTAAAAATGTCTTTCTAGATATTTGGCTAGAGGACTACATACGGAA
CAAAATAGATGAATCTACACTCTAAAGTATNNNTATATACATCTGTATGTAGTCCCTAGT
GAAACCTCCAAAAAGACTTATATTTAGAAACAAAGGAAGTAAATCATTGCCGCCATAGTG
AAATTGACTACATGTAGTTACCTGTAGGGGTGGCTGCGGAAGGGGTGGACTCAGTAGCTG
AAGCGGAATGTGTTGTCCTAGAAAGCCTTAGCAGGTCAGTTTCTTGGCCTGCTTTGGTTT
GATCACTTGCCATGTAGTATAGCATATATGTATATGTATGCAATAAAAATGTGTGTGTTG
CAGCCATGTCCGTACCGTGGTAGCGACTCTGGGTGGCAAGCAAGGAGCGGCGAGCAGGTT
CGACAAATGGCAGTACCTTCATTCTGGATTCACGGTGTGGTTGTCGGTGTCCGAGGCCGG
TGGTGAGGAAGGAAGCCTTTCGCTTCGTTGATGATTTTTGGTTGCTTCTCGCTTGTTGAC
CTGCTGCTATGCTGTGCTGTGCTGGGGTGCAGATGAAGCCTCTGCCAAAGAGGAGGCCAG
GAGAAGCGTTAGCACTGGGAGCGTGGCCTATGCGAAGGCGGATGTGGTGGTGAAGCTGGG
TGGATGGGACCCGGAGTACACGCAAGCTGTGGCACAGGGCTGCCTTGTTGCCTTGAAGCA
GCTCACCTTGGCAGATAAGAAGCTAGCAGGTACGCAACACTAGTCGCCTTCACATTTAAA
TTTCCTTTCATCAGTTGCATATATCTGCAAGAAATTTGACATCACTGGAGCTTTTGATAA
GAAACCAAGCAGACAAAATTTGGCCGCACTAACAAAAGACGGTTTGGGGTTGGAATTGCA
GGGAAGAAGAGCCTTTACATCAGGCTAGGCTGTCGAGGGGACTGGCCCAACATCGAGCCA
CCCGGCTGGGATCCTCAATCAGATGCCCCGCCGACCAACATCTAGTCCAGCTTCAGGAAC
CTTTACTTTACTTTTCTTTTCTTTTTTCGAGACTTCATTCATTTCATTGCTTACGGATGT
ACACAAGCCCACCCGTGCAAAACATTCAACATCCATACTCATGCCGTACGTACTACTGAT
GTGATGGACGGCTGGCTGAGCAGAAGGCGACAGGCACGCAAGAATAAACACAGAATTAAG
AAAAATTAACATAAAATGAGAATTATTTAACTAAACTCAATGTTGATTGGACAAAAACCA
AACTAGGAGGGTAAACAAGGAGCTTCTCCCTTGTAACCATCTTGGGTTCACAAGTATACT
CGGACAGTTCCCTCTTTGCAACTACTAAAACAGACAGACAGAGCGGCAGATTCATAGACA
CACGCAAATAAACTCAGGAGACTACATTCCTTCCAACTCATGATAACAAGTCGACCAGTT
CCTTCCTCCAATCCACCATGGTCACTGACATCGTGCCTTGGCTGCTGGCACATTTGCTGC
TTCCCGCTTCGCCATCGGAGGCAACTGTTAAAAGAGAAACACAAGCTTATTCTTAGGTTA
ACTATAAATGTTGCTATTCTATAGTGCCCTAGGAGCACAAAGTTGTGTGTTAAACGGGCA
AACAATAATGAATCAGGAGCTAATAGCGCCTCAGAAAAGAGTCCGCACCTTATCTTGGAG
CCGAATTATTGTGGATACCAGCATTCTGTCACCGACTATGAGCCGCAACCTCTTCACTAG
GTCGATTCTGCTTATTTTCTTCGCCTGGTAAGAATACAAACACAAGTTAGCTTGGACAAA
AACAAGAAGGGGAAGGCCAGTTTTCAATTGAGAATACAACAACCAAGAACTGATGAATAG
CAGACCTTGAATTCTTCGTAACAGTTATTGATCATGTCCATTTTCTCGCGAGGAAGTTTG
GTCGAAATAGCTGCAAATAGCATGGAAAAAGGCATCCAAGGTGTACTTGGAGCTTTTGCC
ATTGAATCTCCTAACATGGGGGCTTCATACTGACCACCCAATGCTGGAGATGCCTCAAGA
TTCATGTCCTGTTTCCACATAAAACAATCTTGTCAACTGGTGTTCTGTGACTCATCCAAC
ATAACTGACATGACATGGTCATAACAGGAAACTTATCATATTTGGAGATTTCTATCAAAC
ATTAACACTACAATCAGCTTGAAGTAATAATCTCATAATGGAAGCACAGGGTCAATTGTT
GAGTCAGACACAATCTGAATAACTGCATGCTCCTGCTGCTCCAACAGTGGAACTTGTCTG
TATGAGAACAGAAGTTGACTCTAGTGTGACAGTACCAACTTATCAACTCCCAATGTGAAG
AACCTCACCTGTGATACACTGTCGGCTGAACTTGGACTCAAGACCAGTGAAGCATCAGAT
GAATCATGACAATCTTCTTGGGTGAAGATGGAATCTGAAATAAAATGAGAAGGCTGACTT
GTAAGAAAAAATAGATTGACATTTGTTAGTAACTGCACAAAGCTAAATTAAATTAAATTA
AATTTCTAAAAGGATTACACAGTAAGTGTGATTAATTACCTTTGGCTTTAGATGGCAATT
TGATGGTGACTACAAATTCAGAATAGATGTGACTATTCAGATTCATATCCCATACAATGT
AATGCTGCGGGTTTTTAAGGTCATCTACACCGCTATCAAAATACTCGTTACTAGGCTGGT
GCTGCTTAGATCCATGGTGAACTATTTCTACGTTCCCCATTACAACCCGGCACAACATCA
TATAGATGATGCCATTTTCATCAACATCAGAGTAATTCACACTGCAGAAAGTAATACAAA
ATATTGAATTTTTGCAATGGTTAGGGACAGGAAGAAATATGTAGAACAGAAACAAATAAT
AGACAAAGAAGATACAATGGTAAGTTGACAACTAAAAACATGTGAACATGTAAGTGGAAG
TAAATAAATAGTGACAGAAACTATTTATCTACAAATAAGGAAACACAAATGGCAAGAATA
AGACAGATGTGAATGAAGGTGATGGAGGTGAGTAGATGTTCAGAACATTCAGAGTAAGTT
TTTTTGCCAGCAGATGATACGAGACAGGAGCACATACCAGTTAATGGAGCAGTTAGCTGG
CGCAAGGAGTACACCAGTTCCATAGGGTGGACACCTGGTGGGCTTTTTAACTTGCAAGGT
GCCATTCAGCATCATTTCATCCACAGCAGCTTTCGAGCAAGGAAGCCAAGCATAACGCAC
ATTTGCATTACCATGCTGAGATTTAGTAATCTCTGCCTGCTTTTGAAAGAGATCATAGCG
GTCTTCTCTATAATTATTCAAGAATGGAGTTCGGTGGATTCCAATAATATCCTTGGAACC
AATAGCAGTACCCATTCCCTGCAGCAACATTTTCTGCACAACAGAGGTAGTTCCTTGAGC
ACGTGATTGCCCACCCAGCTTATCTTGCTGTGGTTGACAACTGAAGACTGCAGGGAGCGA
AGTGTGTGGTTCATTCTCTCCCACAGTTTCCCCATTGTCACAATTTATTTTCCTGATGAT
ATTCTTCTCAGCTCTAACTCTCTTAGCACTAGAAACCTCTTCAGTACTGGACTCAAAGTT
TGAGCTTTCTGCGGAACTCTCGGATGCTCCATACTGGTCATTTATTTCAGGTGTCCCATT
AGGCTCAGCTCTAACATAGACATGATCTCCATTGCCAAAATCTTTCCTCCTATATGCTAT
CTGATCTTCAATAAGAACTTCTGGGAAGTAACGCCTTCCATTGTCATCAATCCAGGCGAT
TGGCCTCTGAAGACCTGACTTTGAGTCGATGAATGTCATGTGGACAAAGTCCAGCAAAAA
TAGCTGGTTCTGGTATCCTACTTCTGTGATGCTCTTCTTTGTACGGAAATTAACTTGAGC
CAGCTTGACAATTTTTTCTGGAAATTCTTTCCAGTTGCCACTTTGGCGGAGCAGAATGCG
CTTAGGTGATGCACTGGTCATGTAGTTCTGATAGCTCTGTAAAATCTGCCTGCTAAGGTG
GCACGCGATGTTCGCCTTGCGATCTTCACCAACATACAACCTGATATCAGAGTTTCCAGT
AGGATGCTGATGCGATTGAGAGGTGTGGCAGGCATCAGCATGATATGCAGCGGGGCTGTC
CCGCTTCCTCTTGAGGCTAACTATATTCTGTTCACATTTAGCCAACACCTTTTCGTTCAT
CGCAGCCATTGTAGCAAGCAGAAATGAACACCAAGCAGAGACTAATTCCTTCTAGCAAAC
TAAACCCCAACAAGTCTAATATTTACACTAAGCTAATGGAGGAACCTCTGAGCATAGACT
ACTTCAATATCGACGAGGAGAAAACGAATAACGGTCGGGTGAGATACGGGCAAAGGAGAA
GAAAACCTGAAAAGGGAAATTAGCCGATCTTATAATCGATGAACAGAAAAAGGAAAAAAA
AAACTAGAATATCTTAAAGCAAGCATACAGAATATATATGCAAATCAAAGTTCTCCGTAC
TCTGTCGCGGGCTAAATAGCGCTTGAGAAGGCTATGCATTAATTGGGCTCAGAAATTACA
ATTATCACCCGGAACTATCATGTATTCATTTGCGCACGAAAATTACGCTTCATAAACCAA
ATTTTTGAAACAGCTTGCCTAATCAGGAGAACACATGATACAGGGCTTTAAAAAAATCTA
GTGCATTAATTGGGCTCAAAAAATAAAATTATCACCCCAAACAAACATATATTCATCTGC
GCGCGAAAAACGCTTCATTAACCAAATATTTGAAACAGCAGGCCTAATCAGAAAATCACA
TGATATATGGCTTGAGAAAACCCTATTGCGTTAACTTGGCTCAGGAATTACGATTATTAC
GCAGAACTATCATGTATTCACCTGCATGCGAAAATATGCTTGGTAAGCCAAATATTACTT
GAAACAGCCAGCCTAATCAGGAAATCACACGAAGTAACAAGGCAAATGATGTCGCAAGTT
GAATCTAGCAAAGTTGTGATGAAAATACCGACTTCCTCCCCACACAAACAAGATGGAGAT
AAGCTAACGCAAAATTCACAACAAAGATCAAATTTTTAATGCTTAGCGACTCAAGGGCAC
ACGGAACCCACTTGGTGAATCCTAAATCTACAACTTTAGCAGTCAACAAGCAGCTTCCCG
GTGCCACAGATGATCGAAACCGAACAAAAAAGACCTACCTAGTCCTCGCAAAGGAAAATT
CACCAGATCGAGCATACAGACATGTAATCATCACGGCCTAACAACCGGGCGGGCCGCGTA
GGTGATAGATCCATACGAGGGGCGAGCCGAATCGATGGATTCACCGGCCGATGCTTACCT
AGGGTTAGCGGCGGCATCAGCAGGGGTCACGGCGGAGGATATTGAGCGGTTCATCTTGCC
CGATCTAACCCCCTTGTCACCCCCCCTAGGACTCCCCTACGGAGCCCACTTTATCCCCCC
GGCTACGATTGCCGGAGCTACCCCGCCGAAGACGCTCCCCCGGCCGGCGGCGAGACGTTG
GCTGGTCAGAAGCAAGGACTCGGCTCGGAGAATCGCTGCGGCGGCGGGGGGCGGGGGGGG
GGGGGCGGCGGGGGTGGGGGGGGCGGGGGAGAGGGGCCGGGGGGGGGGG
