| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_274254
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_44235 |
2 |
1913 bp |
MLOC_44235.2 |
Available |
Available |
LOC_Os01g43774.1, FRAME:+2, EVALUE:0.0, 13101.m04531 protein cytochrome P450 72A1, putative, expressed |
| MLOC_44159 |
9 |
7337 bp |
MLOC_44159.2 |
Not available |
Available |
LOC_Os07g40920.1, FRAME:-1, EVALUE:0.0, 13107.m04258 protein APO, putative, expressed |
| MLOC_44215 |
2 |
2460 bp |
MLOC_44215.2 |
Available |
Available |
LOC_Os07g48890.1, FRAME:-2, EVALUE:0.0, 13107.m05248 protein expressed protein |
| MLOC_44143 |
1 |
1607 bp |
MLOC_44143.1 |
Available |
Available |
LOC_Os01g71080.1, FRAME:-1, EVALUE:3e-117, 13101.m07739 protein xylanase inhibitor, putative, expressed |
| MLOC_44214 |
6 |
5218 bp |
MLOC_44214.4 |
Available |
Available |
LOC_Os09g16330.2, FRAME:-3, EVALUE:0.0, 13109.m01555 protein pleiotropic drug resistance protein, putative, expressed |
CDS Structure of MLOC_44235
CDS Structure of MLOC_44159
CDS Structure of MLOC_44215
CDS Structure of MLOC_44143
CDS Structure of MLOC_44214
Contig Sequence (2978 bp)
>contig_274254 2978 assembly3_WGSMorex_rbca.fasta
TGCTCCTCTCCAATATAGCAGTATCCAGTACCGTAAAAATGCTCGAAATATACATCACTA
GTTGACTATTTTCGCAATAACACCTCCAAGAAGGAATAGGCGCCCTTGCGGCGAGGGGTG
GAGCCGGATCTTAAATCACCGTGATGCACTGCTTTAACAAAATTTCAAACAACATTGTAC
ATTATAGTAAGTAGAACTTGGGTTCTCGGTTAAGTCGCTATATGCAAGATTGACCAAGGG
GACTGCCATTGGCATCGCTAGGGGACTAGGACAGTGTGCACATCTCTCAAAGTTAAAGTG
TTTTTGTGACAAATGTCTCCTAATAGGTCATAGGTGGTCCACATCGGTTAATGTGTGATG
TGTGCAGTGCCTGAGGATGCAAATCGCATTTTCTTTAGATGCCATCCGGCGCATTTCATA
CTAGCTAATGTGTGATGTGTGCAGTGCCTGAGGATGTTTTATGGTATTGTTAAACATAAT
GTAATCTCGTTACATGTAACGTGTTGTGTGCAAAGCCGGGTGTTGTTGTGTGCACGGCCG
GTTGTTCCTCTCTCTCTCTCGTACGCTTGGCTTACAAACTTTCCAATGAGATAGAGTTTG
TTCGAGATAGGAGTGAGCTATTTAAGATTCTATCCTTTCCTTCGTTTCAACAAACTCAAT
CTTGTAATATCTACGACAGGTTTTCTCTCTCGATCAATATAAACCCTACGGACTCTCCTC
TAGAGGATTGAGACGCTTCATCATATTTTACATGTATTACCATTTTAGAATAAATAAATA
AACAAAATAATGAACTCAATATTATTAAATTTCCTAAGGATGAATGAATTAGTGTCATTG
TGTTATCATTTATAAGGACAAAGAACACGGGGAAAGGAATATGAAACAAACACTCAAAAG
ATTTGCATGAAATGATAGATGCAAGGAAATTGGAAATCCTAACAACACGATCGATCACAA
CATTTGACCACTCAACACTAGATCCATGAATGTAACTAAAACCAACCCTCTAAAAAAAAG
TAACTAAAACAAGCACTAGGCGGGCACGGTAAAATTGAAGTTGTTGCAGAAGAAGCCCCT
GCCGTTGATCTGCCCGGTGAAGGCCATCGTCTGCTTCTCCTCGTCGAACACCACCAGGTT
CTCCTCCATCTGCAGCCCTCCGAGCACCACCGCCGGCGCCGAACCACCACCGGTGGCGTA
GCCGGCCTTGTCCCCCTCCTTCATCTCGACGAAAGCAAAGCACGCGGTGGCGCCGCCGTT
CACCACCAACATGGAGTTGACGCCCTGCACCAGCCAGCTCGTGCCGCCCTCCAGCCTAAA
GCTGACCGTCGGAACGGGGAAGCCGGACCGCGTCTGTCCCAGCTTCGAAGAGTTGTAACA
CAGCTCGAACGGGGCCGCCGCCGGGGAGCTGGACGGGACCCTCGCACCGGCGGCCTGCTC
CTCCATGGCCTGCTCGAACGCGTCGATGAGCGGGCGGTACACGTCGCGGCGCAGCTGCGC
GTACGCGGTCGTCGTGGAGAAGCCAACGGTGAGCGGCGCGTAGGAGTCCTCCAGCGGCAC
CTGCGCTCCGTCGACGAAGACACCCCTGCTGGCCGACACGTAGTAGCCCGGCGATTCCCC
GTGCTTGCGGAGCGGGGTGCCGCTGCTAAGCAACTCCGTGAGGGACGGCCGGCTCGCCGG
GAAGAGGAAGAGCGGGCCCCCGCCGAAGATGGCGACGCCGGTGGTTTGCCGGCTCCCGAG
GCAGAGCGCGAACGATTTAGGCACGCCCTGCGTGCGCGCGACCTGAGCGGGGAAGGCGAT
GCCGGAGCGCCCGAGCCCGGCGACGCCGACGGCCCCCACCGGCAGCCCCGCTAGCAGGGA
GGCCGGCGCGCAGGACGTCACGGCGGTGAACGCCACCGGTCCCAACGGGTTCCTGCCGTC
GGTGGCGTTGGCGGAGAGCGTGACGCGCGTCATGTCCCCCGACGCGGTGTCGCCGGAGAC
GGGGTTGTGCGGGTGCGCGGTGCACTTGCAGCGGTGCGTGTTGCCGGCGTCCGGCATGCC
GTTGCCGTTGTGCGGGCAGTTGGGCGGGTGGAAGCGGTGCGCGCGCATGCAGTCCATGTC
ATTGCACTCGAGCGTGTCGTGGGAGGCGCCGTCGTCGCAGGTGGACCAGATGATGGGGCC
GGAGAGGTCGAGGACCATCGGGCGGCCGGAATTGATAGGGACGGTGTAGAGGGAGGTGGC
CGCGTCCTTGCTGACGGCCATCATAAGCGGCCTGCCGCCAGCCTCATCACCGGCCACCGT
GCACGCCAGGACACAGAGCGAGACGGCGATGAGTATGAGGTCTTTCGGTTGCCACATTTT
GGAATTTTGCAATTGATATGGATGAGTATGCTGTTCGTTGGTAGATCGAGGTTCCATTGC
TAGCTTGATTATATATGGCCAGCGTGGAGTATATACAAGGAGGAGAGTGGTGGTTTTCTA
AGTTTTTCACTCGAAAATTAAGGAGGAGACCCGATGAGCGTGGCGGGATTCTCGTTGATG
GCCGCCTCATGAGTCACGACGGAGCCATGAGCGAGAGTGATGAGTCGGGTGGCGTAAATG
GCGGATCTAGCTAGGTGCATGCTATCGTGATTATTAGTCAAAGAGTTTATGAATCTATAC
AAGAAACTCAGCTTGGATCACCTTCATGTTCTCTCCTCACTCAAAATGGTTTCGTATAGA
ATTCGCCTTCACGTTCATGTTCTCACTGTAAATGTTCTCTCCTCACTTGTCGCCCAACAC
CGAGATGGAGTCGGAGAAGGATGAGATGGTTTAAACGGGGAGTGTCTAAAACTCGATGGG
ATATAATTTGATCTCATTCACCCATAAAACAAAAACAGATATAAAATAGTAGTACAACCT
ACGTCAAGCACACACATCTTAAAGGATCACATCCAATGACTATAAAAATGGAAAAGTCTT
ACGTCCCACCGACGGATCCGGTGGATCTATCATCCGTG
