Map Locations of contig_274234 (5706 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_274234

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44135 1 500 bp AK359885 Not available Available None
MLOC_44134 3 2171 bp AK376547 Available Available None
MLOC_44136 1 607 bp None Available Available None





CDS Structure of MLOC_44135






CDS Structure of MLOC_44134






CDS Structure of MLOC_44136






Contig Sequence (5706 bp)

>contig_274234 5706 assembly3_WGSMorex_rbca.fasta
AATCCTTCCAAACCACCGCCGCCGCCGCCATCACCACTCCTCCCAAATCTCCATCGACGC
AGCCGCCGGCAGAGGAGGAAACCCTAGCCCCGCACCTCGGGTCTCCCTCTCCTCCTCCGA
ACCACTCCCCCCCGCCGCCGTCAGAGGAGGAGGCCGTGGCCCCGCGCGTAGAGTCTCCTC
TTCCCAACCCCTCCCCTCCGCCGTCGGAGGAGCACACCGCGGCCCCGCGCCTAGGGTCCC
CACTTCCTCCTCCCCCTGCCCCGCCAGCAGATGCGGAGGCCGCTGCCCCGGCGCCGTCCT
CGCCTCCCGTCCCCGTGTCCTCGCCGCTGCCGCCGGCCGACACCGCCGAGGACGAGGAGG
AGGAGGAGGATGACGGGCTCGACCCGCTCTTCTCGGATTCCGCCGACCTCGCGGGGTGGG
ACACGCTCGGTCTGCCGACGGGAGAGGACGAGGAGGAGGAGGAGATGCTGGCGGGAGGAG
GGCTCATCGAGGAGCTGCGGAGGGAGAAGGAGAAGTCTTCCGCCAAGAAGCGGCTCAACA
TGGACGAGGGGGAAGACGGCGTGGCCGCGATGGCCGTCGATCCGGAGCCGGAGGTCGCTG
TGACGGGGAAGAGGAGCAAGAGGAAGACGAAGGGAGATGATGGGGATGGGAAGGGGAAGA
AGAAGAAGAAGGGGGAGGATGGCGAGGGGAAGAAGAGGAAGAAGGGGGAGGATGGGGAGG
GGAAGAAGAAGAAGAAGGACAAGGTGCCCAATGAGTCGGTCGCATCCAAGAAACGGGCTG
AGAAGGTAACATTTCGATCATCTTGTTTCCTTTCCTTTGATTCGCATGATTGCATCTGTT
CCATTCAATGGTCGGTAGCTTTTGTTGATGGGTGTCCTGTGGACTGACTCATGTGCGCAG
GAGAGGAGGGCTCAGCTTGAATCCATCCACGCCGAGTCGCAGAGGCTGCTGCGAGGTACT
ATATATCTTGACCGTGTGCATGGTTGGAAGCAGAGCGCGTGGGATTTGCGCATCATCTCA
CTGTTTTTCGTTAATCTTGTTCTTCGCAGAGACAAGAAAGGCATCATTTAAGCCAGTTGC
AGAGCCAGTGTACAAACCCATCTCGTCAGTCCTGGAGAAGATCCGCCTTCGGAAGCTGGA
GATTCAGAAAATGTCAGTTGTCTGATTGCTTTTCTGAGGTGATGCAAAGAACACAATGAC
TGTCCGCTGATATTATTTTTCTCCACCGTGGTTTGCAGGTCAAATACTCCTGTTGAAGAA
GAAGAAGAAGAGGAGGAAGAAGATGCCTCTTCAGAACCCGAGAGTGATCCCGCTGAACAG
CCAGCCATGCCTGAGGTTAAGGAAGTGGGCTCAGACGACAAAGATTTAAAGAATGTGAGT
CTTTATCCAGATAGCTTGATTTTAGCTCAGCATAGTGTCTATGAAACTAAAAGACCACAC
GTCATTGTAGGATGATGTTGACAAGGAGGTTGGAGCAAATGCTGGTGACCTGAATGACGG
CGCCAGTCTCCCTGAGGACGAGGTGATCATTGGTTTCACTCAGAGTCTCAGACTACTATG
CTGTTTGGTATTTGTGCTGTACTGATGTTGTGTCTGGTTTGCAGGATGCTGTGATTAGTG
AGAAGGATCTTAATAAATGTGGTAGCAAATCTCCAGACAAGGTCAGTGCCCCTTCTCTAA
TTGTCTAGTCATCTGCAGCTGCTTGATATGATGGTGCTTTACCTATAAGAAGCATGCCTC
TGTTTTGTGTTATTTGCATTAAAAGTTTCTATCTCAACCCAAGTATCACAATGTTAATTT
GACGATACATATTGACAAAAATATGATCTGTGCTTTACTGTTATTGAATATGACATTTTG
TTGAATCAATTGTTGCTGGATTATCCAATGTTTAGTATTATGGTTATTGGTTGCCTAAGA
TTCTCATAGATTCAAAATTATCTCACAGTGAGTAAGGAAAGAATATTATGCGAACTCAAT
GGTTGTCAATTCTCATAAGTAGAAAATTGATTACTGACATATAATGCATCGATGATTTCA
AAGTTTAAGAGCTCACTTATATTTTTCTGTAATGCTTTGCCTGTTGGACTATTGGTTCTA
CCAGCAACTTGTTGATAATTCTCAAGATAATCACGAAGACAATGCCCAACCAAGTGATGA
CTCCATTGATGCAGTAGATGAGGAAGCTCATCTGCCTCCCTCCTCAAGCCCTACCAAGAA
TACAGATGACAGGTAAGCATATCACACCCTCCTCAGTCCTTGATACTTTCCACCTGTTAG
CATTTACAAACGTACTTATCTTCTGTAAAGAAAATTCACCCCTTGGCCCTTTAAATACTT
TTTTATGCACATGTGAATTATAAATTATTATGCATGGTTTAAGTATGATCATAAAAACTT
GTTTTGGTTGCAGCACGACATATTATCTCTTCCTGTAGCCTTGACATGTGAATTGCTATA
TAACAGTACAATGTAACCTTTAATGATTATATTTTGCCAATTTAAACCTGTTTGACATCC
TTCTACTATCGATAATGTGTGTGGTTGTTTCTTAATCACTATTTTGCTTATGACAAATTT
TCCTGGAGGACAAGCAAAGGCCCTGTGCATTTTTCATGGAATTCGCCTGTTTTTTCTTAG
ATATATTGGTGTACTGATATTGGCTATTAAACATTTTGTTGAATTATCTGTCTGGCTCAG
TTCTTCAGAAGATGAAGAAGAAGAGGATGAGGAAGAAGAAGATAATGACAAGGAGAACAT
CTGTCCAGGCATTCAGCAAAATGATGTAAATACCCATCAACAACCTCGACGAACTCTTGC
GGGTGATTCACGTCCAGATGCTGCTCTCCTGAAAGACTTTCTAGACATTGAAGCTGAGGA
AGAGGATGACAGTGATGATGACATGGCGAGGTTTAAGGACAACGAAGAAGATGATGGAGA
TGATGAAAATGAAGTACTTACTGCTCTGATTGCTGCTGGATTTGAAGAAAAAGAAGTAGA
TCATGAGAAACGTAATGCACTCCACCAAAAGTGGCTTCAGGATCAAGATGCCGCTGAAAC
AAATAATTTCATTCAAAGATTAAAATATGGTCATCAGGAACAGAAAGTGTTAATGGAGGA
AGACGAAGATGATATTGAAGACTGTGAGGATGAATCAGAAAATGAAAGGTCACATGACTT
GACTCCAAATATTGTGCGGCAGAATTCTGAGAAGGCAAAACAAATGATTGCCAAAATGTT
CACAGATGAGAATGACACTTATGAGCACTCTGATGATGAGGAAATAGAGGAACATTTGGC
CCGTCAACGTATTTCAAAGCGAGAAGTAAGTGCTGGCACTTCTGAATACTGAGTGTCTTC
AGATATGCTTAATAAATGATTGAAATTTCATTTTTGAAGTGCTATAGTTCCTCCCTTGCT
GTGCTGTACAAACCATTCATTGACCCTATGTGCTGTAGCAAAATAATTTAACTGTTATAT
ATTCTTTGTTAGGTTCATAGTACTTCACTAATATCCCCATTGGAAGATGACAGTTCAAGG
GAAATGTTTAGCCTTATAAAGAAGCTCAATATTGCTCCTCAACCCCCCAAGAGGCGGGGA
AAGCAAGCAATCTGTGAGGATTCCCAAAATTTCAATACATGCCTATGATTGAAAACATGG
CTGGTCATGTACTAATTGCTATTTTTTATTATTGTTTTCAGCAAATCTTGAAATGCTTAT
GGTCGGAAGTAACAGCAACTCATCATCAAAGGTAAATGCTTACTGACACTCATCTCTGTT
TGTTGTCGTACTTCCCACCTGGATGTTAATTAGCTGAAAGTTTGCAATATGAATTGACTA
TATAGGGCAAATCATCACCTATGTTGCTCCAAATTGAAAATTCATCTAGTAAAACCTGGA
CTTAAACTGAAGCTAGCATTCTCTTCTGTAGTTATTTCTGTTATTATTTGTTAATGTATG
TAGTACAGGTAACTACATGTACTTTTCCCTGTCATTGTTCTGTTAGGAACCGTTTCATGG
TTCTCTTCCATTGCAAGCCATAGCTGAGATTCTAGTTAAACCGATTTCCCCCCTCGTGCT
TGTCTCTTGACAGTATTGTATATTCTTTGCAGTCGTCTTTTCTTGGCCGAACAACGAGTG
GTCCAATCTCATCTTCCCATAGATCAGTTTACAAAGGCTACATTTTCGGTCGCGATGACA
GCAATAGCAACAGCAAGAGCTGCTTTGCAGCCTCTGAGAGTAACTCAGACGTGGTAAGCT
TGATGAAAACCTGTCTCTTATCTAGTCAAAATTCCAATGTGCTCAGAGGCAGAGCCGCAC
ATCCCTATATTGAGAAACATTCTCATGTGCCCCTCTCATTCCGTTAATACAGCAGGACCA
GGCGAACCCCAGCCAAGCCAAGAAAGCGAAGTTCAGCAGTTCACAGACAAAGCCAGCCGC
ATCAGGCACAAGCTCTGAGGGTGGCTCGAGTTCAGGCGCCTCTCTGTTTGAGCTCCTCCG
CAGGTCAACTTCCGGCGCCGAAAAGCAAGAGCACAAGCGCCCCGAAAGCTTCGGCATCAT
CACGGAGAGCCAGGCCGTGCACCAGTTCTCAGCGTTCAAGCTGTCAAGGAAGTTCTCTAA
GATAGGAGCAAGGAACTGACTGACATAGCCTCCCTGGCTCCCTTGCCCAACTCTCACCAT
CTCCACCATGCACACATGTTTATGTCGAAGCAAATAACATTTTTCGTGTTATATTTGGTG
TAGCCTGTAACTTGTTTCCTCCTGCTCCCTGCTTGTGCTCTGGGAAAATGTGCATTGGAT
AAACTCTGTATCACCTTAGGTTCAAGTTTTTTTTTTTGAGGGGTTCAAGATAAATGTGCG
TCTGTGTTCGCTCGCTGTATATCAGTTGGTCGTCTCTGAATATATGGCTCTCCTTTTCTG
TTTTGTTTTGGAGGGAGCTCTCCTTTTCTGTTGATCTCCTTTCTCCTGATCCCCAAAGCA
GGATGGGCCTGTCCGTTTTAATGGGCCAGACTGTGATTGAAAAAGCCCAACAGTCCTCAC
CATCGTCCTACCGGTTGGTCAACGTCGGCCCAGTCTTACCGTCCGCTTCAGCACGCGTAG
AAGATTCTAGGGTTCAAATCAAATCGACCTTGTCCTCCTCCCCTTGCTCGCCCTATCCTC
TCGCGTCCCCCGTCCAATCCCCACCTCAGCAAGCAAACCCTAATCGACTGCCACGGAGGA
GGGAGGCAGGATTGAAGGTGCGCGACCAAGCGGGGGCTGGCCGTACCTGAGATCCGAGCC
TCCGGCGCTCAATATCCCCGCGTCGCCGTCGCCGTCGCTCTCGCGGTAAGAAGATCATCC
GTTCGTTTCATTCAATTCGAGGCCGAATTCGGCGCCGCCGGTGGCCGGAACCTCGCCTTC
CTCCCCGAATCGAGAAGTCCCGAAGTATTCGCGTTCTGAGCTCCGGATTTTCCTTTCTCC
CTTCCCATGGCAGCGGCAGGAGGGTGATGAGATCTTCGGTCGCCGGCATCGCTCGGTCAT
AAGATGCTGGCAGGCAGCGGCGGCGGCAGCAGCAGCAGCTCGCATCTCTCCTCCCCCTCC
TCCCACAGGGACCTCCGCGGAGGCCGGAGCTTCCTCTTCGGGAACACCTGGTTCATGCTC
TCCGCCTACCCTGCGCGCCTGCTGCACCCCGCCGACCGACGCGCGCCCGCGGCCGCCTTC
GTCGCC