morexGenes - Barley RNA-seq Database

Contig contig_274193

Source Contig contig_274193

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_274193 (4280 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_274193

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44107	1	945 bp	MLOC_44107.1	Available	Available	None
MLOC_44109	3	805 bp	MLOC_44109.3	Available	Available	LOC_Os02g46130.1, FRAME:-1, EVALUE:3e-41, 13102.m05175 protein tRNA synthetases class II domain containing protein, expressed
MLOC_44108	1	761 bp	MLOC_44108.1	Available	Available	LOC_Os06g12970.1, FRAME:+1, EVALUE:2e-11, 13106.m01427 protein retrotransposon protein, putative, unclassified

CDS Structure of MLOC_44107

CDS Structure of MLOC_44109

CDS Structure of MLOC_44108

Contig Sequence (4280 bp)

>contig_274193 4280 assembly3_WGSMorex_rbca.fasta
GTCGCGGTTGCGCAACCGCGACTAATGGCAGTTGCGAACCGCGATCAAAGGCCTTTTTTC
CACCAGTGTAGCACAAACATTCCGTCAGGGCAGGGCGCGGTGGGAGCAGATGAAGCCCCG
AGCGCGGCTGGGGTGTGGAGGCCGGCAAGTTAGCTAGCCGGGACGTTTCAGGCCAGGCAG
CTGATGCGAGCGGGTCGTCAAGACAAAGCTACGACAACAACGGCGTTGGCGAGCGATGAT
GTGCGTCAAGGAACGGCTTCGTCCTCATAACGCAGAAAGAGTTCTCAGGCGCATTGCGGC
ACGACCACAGCGAGGATGGGGCATGCTTGTGGTCGCGAGGCAGCAGGAAAATATGACCTC
GTCGTACCAATCGTCCATATTTCTTCACTAAGATCTAACGGGAGCGTACATGCAGCGACA
CAGGACACTCCGGCCAGACATGAGCATGATGATTCATCTTCATAGGATAGCTCGTGCATC
AGACCAATCAGTGCATCTAGGAGGAAGAAGGTTTCTTATGCTGTTGCAGGCACACATCAC
GCGTCAAAGAGACACAAGGTAGCATGCGAGGAGGCAGCCGAGCCGTGGGTTCCACGAGGT
GACCGTGTTCGTCATGTATGGTTGCAAGAAGCTCGTGTGCAAGAAGGTAGAGCTGGCATA
AGACTAGTTCAGTACCTATAGGAAAGATCTGTGTTTACATTTCATTTCATTATTGAAGCA
GGCTTATTTTGAGTCATGCACATAGGAGCACAAAAAGTCATGATGTGCTTGGTAGTACGA
TTATTATTGGGTAATGGATCGATTGATTGCATGAGGTACAAGTACATTTGCGTTTGCCAG
TTGTATGATGCACAAATATATTGTGTGGTTCTCGTGTAGGTGTCCCAAATTACTGAATGT
CATTGAGTCTGGATTAGTGTATTACGGATGTGCCACACAACACTAGTGTTTGAAGATTAT
AGTCACGGGGTCCTATTAATAACCATGTGGATGTCGTGGGAAGGACATGCATTCAGAAGC
AAATGAAAAAATATCATATCGCATCGCAATAATAGCTCAAATTATACGATCTAACACTAG
GTTGTTGCAACATAGAACAACATACAAGGTTCAAAGATAGAAATACAGCCGCACGGTGTC
CAAATTTAGATAATGGCTATCCCACAAATTACATAGATATGAAGATACGTGACTAAACAT
TAGGGTTGTTGCCAATTTTGCATAACTGGTATGCCACATACAAAAGAACATTCTTCAAAT
GTGACACACATCATAGTTCAGATATGGTTGAAGATGACACACGTGTAGCTCGAACATGCA
TTCGCGGCCATTTGGTCTCAATTTCTTACCATATAGGCAAGACTAGGCTATATAATGGTA
AACCATACCTTCATCATCTCACACTCTTTATCTTTGTGGAAACATATCACTACCACATCG
TCCACCTGTAGTCCAAGAATGTTCACATATGCTTTGAAACCGCCTTGTATGACCATCCTG
TCATCATTCTCTTCTTGAACGAAACCTTAAGTTGAGTATCCGGTTCACCCAGCAGGTATA
TGTAATAAAATATTCTAGTGAGACGTCGTTGCAGTAGGTGGAACCGCCCCAGGAAAAGTA
GCGGTAGTCTAGGCCAAGCTTTGTCTCTTCCATGTCATTATTCATGCGCTTAGTGCGGCC
CCACATCTGCTAATCGATCTCTTAGGTACAATACAATGCACTATTATCAACAAATGGACC
TGATAATGGGGTGCCTGGGCACCCGGGAGTCGAAAGCCCACTCTATTGCAACAAACTCAT
AAAGATAGTAAATATGTACTAAACGTTGTACAATCCTGGAACCATCCAAGCTTCTACTTC
TGTACCACGGAGATTACTTGAGCATTGTTGACTCTAAAATCAAATGCATCCAAACATAAA
TAGAGCTAAAACAAACTAGAATTATCATTTTTGTAGTGACGTGCATCGATTTAGTTCTCC
GACACGGTTGCTAGGCATGCTTCTGGTCCTTCCTTCATTCCCAAGGCCTCTCATTCCTAA
ATGTGTTGTGTTTTTGTACAAGAGATGAGAGAGGAAACTAGAAATATCATCGCATGCCAT
GCTGGCCAGTCGAGTAGTTGAGGTGGAGGGGATGGTAGTGTATATATATCCATACTAGCT
AGCTCCATTATCATTGACCATGAAATAGCCATGTGAATCTGTAGGTGGTGGGTGAGAGGC
AATACAAAATCATCAGTTTAATCTTCACAATGAAAGATATGCTGCTACTGATCCACAATG
TTTACTACTTCACAGGGTAAAAGTGCATTTTGTGGTTGGCCTGCGTTAATGTACCCCCAA
AATGAAAATAGATCTCTTAATTAAGGACTGCAGTTGGACTCATCAACCCCTTAATAAGGG
CTGCAGACAGACTAGAGAAAAGGGGTTGGCCAAGCTATGGCCTCTACCCCCTTTGCAAGC
GTGAGCAAGAAAGTGGACCTCACCTACTCTTCAAATGTCGCGACATGCTCAGACTTTGGA
ACTTGATCAGGGAGAAATTCGGCCTCCATCATCTTGATACCCCGACTTGGCACCTCGAGG
AATCAGTGGGTTGCAGGACCGACTCGGGGGGTCCCCAATAGGATGGTAATGTCTTTCCTC
CTCATGTTTGTCTCATGGATGGTGTGGAATGGGAGAAATGGTCGGGTCTTCGACACAAGA
GCGCCCCACCTCCCATCCTTTTAAACAACACCGATCACGAGGCAAACCTCTAGATCATCG
TAGGGGCAAAGAAACTGGGTATCCTTGTCACGCGCGAGTAGCCCTGCATGCCATGCACGG
GTGATCCGTTTGTAACAAACATTCCTCCTCTCTTAATCAATATATGAGGCAAAACAACAA
CGTGAAAGGAAAGATGCAACAGCAATTTTAGTGGAAATTCGAACCCGATACTATCTCCAA
TCAATTCGCTGCCAAATTTTGAAATCCTACGAGATATGCGGTCGAAACACCGGTGTCACA
CATACAGAATTTAGGATATGGATTCAGTACACTCTGCTACAGGTAGCGGAGGATTCAAGG
GAGAAAGCATAGTAGCAGGAGAAGAAAACTAGATAAGCTTCAGCTTGGTGCATTGACGCC
AGCCGCTTGCAAAAATAGATCAATTTTTTTCATGCAAGGATGATTATCAACAACAGGTAT
CTTTGTGAAGCTCCAATACACATATCTGACGTTACAACACATTGGCCACGCCATTACCTC
AATGCAATGAACCACGCTGCATGCCAGCTATCAGAGTCGTGAAGATGCATGATGGCAGCA
TGCATGTGTACAAGCTGTCAACCCGGGGAACCGAACTTATGGCGTGAGCCTCTGTGGGTC
ACGAGGGAACAGCGACGTCTTCCTGACGTTGTTGAGGCCGCAGAATAGCATGACCACTCT
CTCCAAACCGACCCCGAAACCGCCATGAGGAGGTGCACCATAACTGTAATTGTCATCATA
TGAGGATTTAATTAACAATCAGCGAAGAAGATACATATGTATTAGCATTGAGATGGATCG
CTGGTACACAGGTATACAGTAAATACTTCGATGATAGAACTTCGCCAACATACGTTGAGA
CCAGAACAAACCTGAATGATTCAATGTATGATCTGATAGTACTCGTATCAATTCCGCACT
CGATTGCGCGTTCCCTCAGCAGTTTAGGTGTATGTATTCTTTGTGCTCCAGAAATAATTT
CCTCGCCTGTTTTATACATAAATTTGGCTCGAAATCAGACTTCAAACTAAGTAATCTTTC
ATGCTAATATACTCGGATATACCAGACAATTTAACATGCAGGATCCCCAAAAATAATAGC
AAAAGATGTAGCTAAGCCCAGGGGCGTTGTACCCATGCTAAACAGTAAGAAAATGAAAAC
ATATTCTAAAAATTATGAAACTTTGGGGTTCGAACATGCACAAAACCTCTTAGGTGCTTG
CAAAATTTGATGATGAAATGATATCTGATTGTTGTATAAACTATTTACCCGAGGAAGAGG
AAGTGGCCTAATATAGGTAGAACGACATCGAGAATGGCGTTTTGGTGGCCGAGCTACCTG
CAGGCCGAAATCTCGCGCCGTGCAATGTAGCTACGCGATTTGTGCTGGTCGCTGTTGCAT
GCATCTATACGATGGACAGTAATTAGAAATACATCAGTGCCACGAGCTGGCGTGCTATCG
GTGTACGTGGGCCTCGCGGGCGCAGACAAGCAGTAGACGTGATGTGCTAGGTGGTCTGGG
TTAAAAAAATCCAGCTGCAG