morexGenes - Barley RNA-seq Database

Contig contig_274162
Source Contig contig_274162
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_274162 (8737 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_274162

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_44084	1	1152 bp	MLOC_44084.1	Available	Available	LOC_Os02g30470.1, FRAME:+1, EVALUE:4e-36, 13102.m03327 protein expressed protein
MLOC_44085	1	1021 bp	MLOC_44085.1	Available	Available	LOC_Os10g03600.2, FRAME:+1, EVALUE:4e-20, 13110.m00273 protein OsFBX343 - F-box domain containing protein, expressed
CDS Structure of MLOC_44084

CDS Structure of MLOC_44085

Contig Sequence (8737 bp)

>contig_274162 8737 assembly3_WGSMorex_rbca.fasta
ATCAAAAATTATAGATACGTTGGATACGTATCAGAGACCCAATTTTGCCTCTCCTATTCG
TGATCGCTATGGATATTCTCACCAAGCTAGTTCATAAAGCCATGGAGATAGGTGTGCTCA
GTTTCGACAATGAAATTTCGGCGATCCAAAGACTTACGATCTACGCGGATGATGTCGCCA
TGTTCATCAAGCCTTCTACCCAGGATTTGGCATCGGTTTGCTCTATGCTTGAAGGTTTCG
GAGAGGACTTGTGGATACGTATTAATTATCACAAATCGTCTGCCATTCTAATTTATGGGA
CGAAGAGGATAGGAAATGCATGGTTGAGATGCTGCATTGCACCATGGCACAGTTCCCATG
CAAATACATTGGCCTCAGTTGGCGATCAGAGCCTTAACGAGGGCTGACTCTCAACCATTG
CTCAACCAAATGAAGAGGTGTGTCCCGGCTTGGCAACGGGGCCTCATCCAGAGGTCGGGA
AGTTTGGTGTTAGTGCAGTCCATCATCACCGCAAACCCTATTCACCACTTCATGGTAACA
GATGCACCGGAGTGGGTGTTCGAGGACATCAACAAATGGGTGAGATCCTTCTTCTAGGCG
GGCAAAGACAAGGTACACGATGGACAATGCCTAGTGCGATGGGACACTATCTGCAGGCCT
AAGTGCATGGGCGGATTGGGCATCAAGAACCTGAAAGTGCAAGCTCTTGCACTAGAAGTT
AGAAGGGAATGGTTAGCCTTAAAGAGGATGGACCGGCACTGACCATGGCAAGGGTTAGTG
ATGATTGAGGACAAGGATGCTAGGTTTGTGTTTGATACACTAGTAAGCATCGAGCTGGGA
TCAGGGGAGAGTATTGTTTTGGCAAGACAAATGGATCCACAACTACTTTGCGGCTCACAT
CGCCCCTCAGATTGTAGCCTCGGTGCAAACAATAGTGATAAACTCCCGCACTATCAGCAT
GCTTTGGAGAATGGTCACTAGCGGGACGATTGCAAAACCAAGAACTCCTTCACGTTTATG
ATGCAATGCATGCATCTAGTTTGGGCGATTGACATGGTGGCGAGACATCCGGACAGGCCT
GCCACATTCTGCTGGCCATGCTCGACTACCGACGAGTACATGACCAAATCAGTCTACACC
AACATGTGCTCTAACCTTCCATGATCACCCACGACGGACTGCACTTGGAAGAATTGGGCG
CCACTCAAATGCAAGCTCTTCATTTGTCTTGCATTGCAATACAGAGTGTGCACTTTGGAT
CGACGAGCGAGGCATGGACTTCAGGATCAACCCTCGGGTTGCTATATTGTCTGCAAGCGG
AGGATAACATCGAGCACATCCTAGTATGGTGCACTTACACACTGGAGGTATGCCACAAGA
TGTCTGACATACTTGGGCTCAACACCCATAGCCCCACGAACACCGACACGTTATGCGACT
GGTGAGTGAGAAAGAGGGCTAACTTCACCGGTCATATCAAAAGAGGCTTCGACACTCTGG
TCACCGCTATGGCACGGGCACTTTGAAAGCAGAGGAATGTCATAGTCTTCACCAAGCTAG
ACCATCAGAAACCTGCACAAACACTATCTTATATGGTGTTAGACGAGATTGCCGACTCGC
GACACGCAGGAATGGGTGTTGGAGGATTACAATGTTTTGTGAGAAGTTAGCTTAGGTAGG
TTAGGAGTTCTGTGGAGTTGTACTTAGCCGTCGAATGTTTGCATCCGGGTCGAGCTTCTT
ATAAATGTCTTTCTACTTTCTATAAAAATATGATACGTCATTGCATACTTTTGAAATAAA
TAAAAAAGATTTATGAAGTTATCGTAGGAGCTTCGTCGTTGACGGTAATGTCTCTTCCCA
CTTAATGTGCATCGTTGAAATAAATCAAAGAATAATGCGAGCACCATAACTTGAACCTTG
GTGGAGTGAGGATACCACCATCCCTTTAACCATCCAATCACAGGTTGGTTCACTGCACAC
TCCATATTATATGAGTATCTCCGAGATATTAAGCAGACACAATATTTTGCATTGACAAAG
GCATCTATATCTGGAACACTAGTGCGCGCATGAGGGCCGAGGTCTAGGACTTGAATCCTG
ATGGGCTGGTTCAACCAAAAAAGAGTAACCTCTAAATTATGATCAATTCGTCACTACGTA
CGAAGGCACATGTTTAAGTTGGGTTGTAAACGAATATCGTATATAATCAAATCATACCCC
CATCCACTCCCAATTACACCCACTCCTCCCTCCGATAACAGAAATCGATACTACCGCGCA
TTACACCCACTCCTCCCTCCAACACTTTACCTGTGAGAGCAAGGACAATAGTAGAGCCGG
CTGTCGGCTGTAAGCTCATGGCATATCATCTATAGCCTATCTTATAGCTAACTAAGCAAA
AATATACTACTTTATTCCTTATAGCCAGCTGACTCTGCTTTATTGTACTTGTTCTCAGAG
CATGGTTAATAGTATAGCCAACTGCTGACCATTAGCCATCTTATAGCTCACTTTATAGCT
AGCTTGTACAATAGTTAACTGTAAAAGAGTACTATTTTTATCATATATGGCTCACCTTTC
ATTCTCACAAAGCACCTAGGAACACGTGCTAGAGCTAACTCTTCACGAAGAGTCTGTTTC
CTTCTCTTTCATCCAATTCAGTAAAAATATAATATTGTAATTCTTACATCCTGCTGACTG
TATCTTATTGTATTTGCTCTCAACGGACAGGTGTATTTAGTTTTTCGATGTGCATAGTTG
CAAGCGCTGGCGGTAAAAAAAAAACATGAGTAGGCACGGCATGAATGAACGAACTACCTA
AAAATGTCAAATGGTGTCGGTCTTTTGTTTGGCGGCACAAATGTGTCCGTATGGTAACAT
GTCCCGGTCATTCCTTTCGTGCTTCTGTTAGGAAAGATGTTCCTTCCCCCATTGGCTAGA
CAAAGTGAGAAACCGAAGATTTTTTTTTTCCTTGTTTTTGCTCCTTTCCGCACGGAAGCA
TCCTCCTTCCTTCACGTCCCCTGCAAAAGCGCCGCACAACGAAAAGCAAAGAAAAGAAAA
AGAAATGGTTTCCGCTCGTTCATGGCTTCATTGTCAGACCCCTTCTTCTTCTTGTGATCC
TTTTTTTCATCGACCTTGTGACCACACGCAGCGACCGATTTTGGATTTCACCGAGCCGAC
AGCACGAGCACTAGTGGACAGTAATGGCAGATACTACTGCTACCACGTGACACTACAGTC
TTCTTCGCGCGACGTCCCAGGTCAGATCGACGAGGAACAAACAAACAAATACGCACATCT
ATAGCTTACATACTCCAACTCCAAGCCAAGCCAAGCCGACGGCCGGGTTTGGACTTGACT
CACCGGAACCGGAGACGTTCACGTGGCGATGCCAACCGCCCGTAGCTAGCCTTTCCACCC
ACTGCATCTGCACATACACACACTACGGGAGCCCGAGCTCACCGGAGTAGTACGCTCGCG
TGTCGCCGTGTGCCTCCATGGGTGCTCCGCGTGGCCCGCCCCATCCTTCCGCCGACCGTT
TACACCTTTCCCCAAGCCCGAGCCCGTGCCCGTGCCCTCCCCTATTAAACCCAACTGCTT
CCCTGCCAGTTCATTACTCTTCTCCTCGCTCCCCATTTTGAATCGACAGAGATCAGAGGT
ATTGTGGTGCAGCTAGCTAGGGCTAGGAGCGAGCAAGCAAGCAGATCCAGGAGGAGGGGA
GCGGAGATGGCGGACTGGGGGCCGGTGGTGATCGCGACGGTGCTGTTCGTGCTGCTGACG
CCGGGCCTGCTGTTCCAGCTGCCGGCGCAGGGCCGGATCGTGGCCTTCGGCAGCATGCAC
ACCGGCGGCCTCGCCATCCTCGTCCACGCCGTCATCTACTTCGCCCTCATCACCATCTTC
CTCATCGCCATCGGGGTCCACATCTACGCCGGCTGAAGAACCCCCCGCTCTTCTTCGCCA
AACATCGCTTCTCCGGCTCCGCCATGCGCATGAAGCTGTATTTGGCTGATATTTACCGTT
TTTATTGTACTGTGTAGTGAGTACTCTACCTACCTTGTATTGTCTTCTTCGTTTAGGTGA
GGTGACCAGAGAGACAGATATGGTTTGTTGTTTACCTTGGATTTCGTTTGAGATTGCTGG
CTGGCTGGCTGCCGTGCACTCTCTGTCTCTGCCTCTGTCTCTGGGATGAAAATTTATCCA
GGATGGATGTTGTTGTTGCTGCAGTTGCCCTTGTGATTCCTCCCTTGAGTCAACCTTGGA
CGTGTTAATTTATCTACTCTATCTCGTATTCACGCTTGTTCTCCTTTATTTTTACTTTCT
TCAAACCATATCTCCTTCTTCCTTAGAAAAAAGTTATTATGTGTTCCGAGTTATATGAAT
GAACGCACGGCACGGCATTAAGAATATAAGGCAAGAACAAAACCCATTCCAGCTCTCTTG
CGTGCACTCTGCAGTTGTACTACTGAACTCCTCCCGGTTGAAGGGTACGTACTGATTGGT
AGCAGCACAGGTTAACCCTCAGAATCTGCTGCCCGTTGCCTACACTAGTAGGTTTCGTCA
CCCCCTTTGCGCAGTTCGCGGATCCTACTAAGTCCTAGTACTAAACCTTCCAACTAATCC
CCCTGATTTTCAGGGGTAAGTGGGTTTCATCCTCCTCTTAATCTAATCAATGATTACTAA
GTCAGACTATTCCGTAAACTTACGTAAACATTTACGTAGATGTAGCATTACTCTTTCATC
TGAGTGGGTCATGCTCGCCCCGGCTCCCCTGCCGCATAAGCTGCGTTGGACCGAATCGGC
TCATGTGATGTGCTCCCACCGACCGGATCCCCTTTGCTTCCATGGCCCGTCAGCAACTTG
GGCGCACCCATGCGATTAAAGCAGCTTCGTATCGGATTCTACTACTAGTACGTTGCAAAG
TCACTTCCAAGTTCGAACCGACACACGCTGACAGTTCAAATCGGACTCCCACTGGAAAGT
CAGTTCAAATCGGACTCCCACTGGAAAGTCAGTTCAAACCAACCGGACAAACTAGTCAGG
TTAAGGCGACTGCACGTCTACATATATGTATGTAAAACAAAACAAATACTACGAGGAAAG
TAAGTAATACTACAAGACGACGATCGATCCGATGATGCAGCCGGGCGAGGAAAGTGTTAC
CGGAGACGCGACTCTGGACGCCCAAGACATGGTAACGGAGATCCTGCTGAGGCTACCGCC
CGTCTCCGTGCTCCGCTGCCGGGCCGTGTGCAAGGCGTGGCACCGCATCGCCACCGACCC
CTCGTTCCTCGCCGCCCACGCCGACAGGCGTCCCGCCCAGCTGCTCGTCGGATCAAAAAG
CAAACCATCTTTTTTAGACACCATCCCGCTCTCTCTGCAACTGCAAGTCGACGACTTGAG
CCAACTCCACTGCCCCAAGCAATGTGAGGTCAGCGACCTGCTGGGTTGCTGCGACGGGCT
CCTGCTGTTCCAGGAATCCCTTCATCGCAGTTTTTGCGGCTCCGTTTTGTTCGTGTGCAA
CCCGGTGACCAGGCAGGCGGCTAGGTTGGACTTGAGGCCGCCTTCTTGCCCCGGCTTCAT
CAGGCTGTGCGGCTTCTACCGCCACGCCCCGTCCGGCGAGCTCCGGCTCCTCGTCCTCGC
CAATGAACCACAGCCAGCTGGGTCGGCGGCGCACTACGTCTACTCGCTCGCCGCCGACGA
CGCCGACGCCAGCAAACAACATCCTCGCCGTCTCGGACCAGTGGCCGACGGTCTAGACCT
AGCCCTAGACCAGTTCGCCTATTTCATCAACCACTATGCCCACCATAGGGGCAAAATTCA
CTGGACGATCCATCCTCTGGCCAGGAGGACCCAGAAGATCCTGGCGTTCGACACGGTGTC
CGAGGATTTCCGGCTCATGTCGCGCCCGGCGGATCACTGCTGCAACGAATATCTCTGCCT
CCTGGAGCTGGACGGTAGGCTAGCCGTGACGGCCCCTGGACTCCATGGAGGTTCCACGGA
GCTCTGGGTGCTCGAGGACTACGACGACGACCAGAGCTGGTCACACCGCTTCCGGATCGT
CCTGCCGCCGCGGTTTTCTCGACCAGATTGGTGTACGGCCACCGGCGTGCCCAACGTCGT
TTTTGTGTCAAGGTACCCGACGCTCTACCATCTTACCGACAAGAGGATCGTAAAGGAGAT
ACAACTTGAAAATGACAAATCGGTTTACTGCTATATTTTCAAGGATAGCCTTGTGCCACA
CGCCTTCTTGAACCCCTATTAAGTTTCCGCATTAAATTCACGCCACGAATCGATGGTGTA
CTCAACTCACATGGATGTAATTTGCCTTCACTTATACTCGATCAACATGCATGTACTCTT
CCTTCATTTCTTAAGGAAAATAAATCTTTCATTTTCTTACTCTTTCAGCATACGCGAGAT
CAGGTATACTAGTGCATACCATCGCAAAAAGAAAATATATATACTAGTGCATGTTTTGCG
CGAAAAAAGAGGTAACTAGTCCATTGGAAACTCTTCGTTTGTCAAAAGAAAAAACATTGG
AAACTCTTCATCATTATTTGAAGAGCTACATACATATGTTTGCGATTGTTGTAATCAACA
AATGTCTGCCCTCTTTTTTCTCTTTTTTTTTAGGATTCAATGTACCATGTTAATTATTTG
ATATTCCTATTCCTAGTTTGTATAGTCAACCTTTTTTTTAACAAGGCTTCTACCCCTTTC
CATTACTTTGACATAACAAAAATATATCGTTCAGGGAACCTTTTAAAAAGGAAACAAAAA
GGGAAAAAAAACGAGTTCAAAGCATCGATGGAAAACCCGTCATCGTGCAACTCACCGTGT
GGCGAAAACCAGCAACACCTACTCACTAACTACTAACTGAACTAGATAGGGACAAGGGCA
AGTCCAAAAGAAAAGCATTCCAAAAGTATACAGACTCACAAACTGAGTCACAAAGCAAAG
CTTGCGCAGGAGCAAGACAACCATTCCACTTTTGCAAACAGCGGCAGCAGATCATGTAGC
AAACATCTCAGTCGACCTTCATCCCAACAGGTGCAACCCAAATCCTCATCAAGCTTGTCG
CAGCAGTCTTGAGCATCTTTGTTCCATGTTCCATGGTCTCTCGGTCCTCTCCAACAAATA
AACCTGCCCAATTCGAGAGGGGACCATATGCAGAGACTACCACATCAAAAGGAGTCATCA
ACTTTTTGTTCACAAAGATGGCCCTGTTACGACAATTCCACGTAGCCCAGCATATCGCTG
CAAGGCCGAAAGTGTAGAATCTCACATCATCAGGTAAGAAAATATAGCACCCTGAAAAAT
ATTGCCAAATGTTGTTCGGATCCAAATCAGTCCCAAAAACACATCCCACTGTCCTCCAAA
CGACTCTAGCAACAGGACACGTAAAGAAAAGATGTGAGGTTTTTCTGTCAGGACAGGAAA
AACATTTAGGAGCTCCCATCCACTTACGTCTAGTCATAACATCTCTGGTTACAACAACAT
CTTGAAACAACTGCCACGGGAAATTTTGAAGTTGTAATTAGGACAAAAAAATGAGCCCAG
TTGCGAATAAAGGATGAACTTGTAATTGAGACAAAAAATATATCAAAAAATCAACCATGT
TTGGCAATGGATATACAACTAACACAACATTTTCATGAAAAGGAGACAAAATAGTTCTTA
AGTGAAAATGCTTCATAAATTTAAAATAAATAAATGAAAAATAAAAATGGAGAAACAAAG
AGGAGGTATTGCTCGGGTGTTTTTAACAGGGTGCGTAGACTAGTAGAGAAGAAAAACAGA
AAAATGTGGCCACGTTACCCCATCTCTACTATAAAAAGTACGAGAGGGCAGATCCAAATT
ACAATCTAAACCGTCTAGTCAGAGATCTAAAGGTTTAAATTAAACGTTAACGAAATTGAA
GGGCTAAAGAAAAATTGATAAAAAAAACCTCCCACTTCCCCTCTCTCTCTCCACTCCTCC
TGAACCGCCCGTTGAACCCGGATGGCCGCACGCCCATCCCCACATACAAGGCTCTACCAT
CCAACTGAGAGATCCCCGCCTCCCACTTCCGAACTGCCCAAGTGCCCAGCCACACCCTCA
CGGAAGCCTTCCCTGTCGTTCTCGTCGCGTTTAAGAAAAATGTCTATGAATCCGCGTGAA
GAAACCATCATTGACACAACCCTTATTGCTTTGATATTATTATATTGTGTCGATTTCTTG
GCTGCAGATTCAATAATTGTACTTAATGAATATTCTGGTTTTTCTAGAAAGATAAGGCTG
GTCATAGTGGTAGTAACTAAGTTAGTATCATGTACTTGGGACTAGTAAACATGTTGATGT
GACAGACAATTAAGAAGAGAGAGAGGGTTAGGTAGTATATGTCATGCATGTCAATAAATA
AAATCATCTATGATACTACTTTATGATACTATGCANNNTGAAGGTAGTATCATACAATAG
TATCANNNNCATGATACTACTATATGATACTTCCTCCGTTCCTAAATATAAGTCTTTAAA
GATATTTCACAAGAGTCTACATACGGAGCAAAATGAATGAATCTACACTCTATAGTATGT
CTATATNCATCCGTATGTAGTCCACTAATGATACCTTTTTAAAGATTTATATTTAGAAAC
GGAGGGAGTACTCCTCACTATAAGAGCATCTCTAGTAGAGCCCTCAANNNNNNNAACCCT
TAAAAATAACCGCTTTTTTATAGTTTTCATCGGAAAA