Map Locations of contig_274144 (8047 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_274144

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44080 1 2243 bp AK361923 Available Available None





CDS Structure of MLOC_44080






Contig Sequence (8047 bp)

>contig_274144 8047 assembly3_WGSMorex_rbca.fasta
TGTGGCGTCACGGGGGGGGGGGATCCCGCGCGGGGGGGTTTGACCGGCCGGGGGGGGGGG
CGCGGGGCGGAGTTGGCGAGGGGTCCCGCCCGGAGCATGACTCCGTCCGGCGCCCCAAAA
AGCCCCTAGATGGGCGTCAACTGTCGTCGTTTTTCTGAGGACACATGTCATGGCATGGCT
AATCGTACGTGGTTGGGACCGTAAGAACACCGGCTAGCTCCGGAAACGGGATTACAGACA
AGCGGTGCAAGACACACGATGTACCCATGTTCGGGACCATCCGTGAAAGGTAACACCCCT
AGTCCTGTTTGTGTTGGTTGATAATCCGGATGGGGTTACCATACTCCTTGTATGATGGAG
GAGGAGGAAGGAGCATGAATCATATTAGTGATGTTTGGCCTTCATCCCGGCAGTTTTCTG
AAGAAAGCACGGCAGTTTTAAGCCTTCATCCCAGAAAATGTCACGCCGTCCTAAAAAAGT
GTCATCCTAAACATAACTAAAATGGCCATCAAAACGTTCGCAAATGCTACCTCTTAACGT
TCACCGGCTGACAGGGTCAAACAAGAAATGAACGGGGAACAGAGAGCAAATTTGAGGAAA
TATGAGACGGATCGATCAATACATCACAAGTTCACTTGATTCACGGTCTTGTTCTACAGG
CGATCCATCACCCCCGCCACATGCTCGGACCGCGAGCTCCATCCCACGCACACGCACACA
CAACAACACTGAAGAAACGTACTACAACACGTACACAACAACAGCACCGGCCGCGGCGCC
AATGGCATATGGCTCATCAGTCCGAGGACACGCGCACACGCACACGCACCCACTACGGCC
GAACCAGCTAGCGCGAGCGGCGACGGCTAGCACGGGACCAGAGTCCCGTTGGCGTTCCCG
TTCCCGTTCGCCGTGCCGTTCCCGTTGGCTTTCCCGTTGGCCACCGCCCCGTTACCGTTG
CCGTTGGCGTGGGCATGAGCGGGGGTGGCATCGTTGTGGGAGGCGATGAGCCGGCCGGAG
GGGTCGTTGGAGGCCTTCCACTGGGCCACCCACTCGATGGCCGCCGGCGTGCTGCACGCG
ATGCTCGGACCCCACGGCACCGTCTCCCTCGCCGACTCCTGCATCAGTTCAGATTTTTGC
CTTGCACGTCAGTAATAAGTAAATCCTTCCAAAGGAGCTACAGAATCCGTCAGTTAAACT
GCTTGGTGTCTGTCTGAATTAATCGATCACCTGAGGGTAGAGCCTCTCGAAGATCATCCG
GTAGTAGTAGGCCTCCTTGTTGATGGGCGTGTTGTAGGGGTACTCCTCTGTGGCGTTCTT
CATCATCTCGTCAGTGACCTGCTGCTCGGTAAAAGCCTTGAGGCCATCGATCCAGTTGTA
GCCAACGCCGTCGCTGAACTGCTCCTTCTGCCTGTACAAGATATGCTGTGGACGGCAGTT
GCAGACAGCATTAGTTCAGAACGCCCTGTGCATGCTACGCTGGATATCTGATCTGAAAAC
TCAAAGAAGGTGGTGTCTGTACCTTTGGCAGGTATGGCTCCTTCTCGTCGTCGAAAGCCT
TCCTCAACACCCACTTCTCGATGCGGCCAAGATCGGCATCGTACTGCGTCGCAGCAAACA
ACAAGAAAACGTCAGCAAATTCAGGGCCAAAACAAATCAGACATGCGCTTAGCACACCAT
TTCTCCTTTCACGGCAGAGATGAGTGAGAGCTTGTACCAGTTTCCACTCGGGGTCCATGC
TCATGGCGACGTCGATGAACTCCTTGTCGAGGAACGGCACGCGGACTTCCAGCCCCCAAG
CGGACGTCGCCTTGTTGGCGCGCAGGCAGTCATACTGATGAAGCGCTTTCACCTGCGGGT
TTCACCACATCAGTTTCGCGTCAAACCTGAGGGAATCCGACGAGTGTGTCTTGGTTGTTT
GTGCAGTATTATTAATTAGGTATGATGTAGTTTCAGTTAGCACCTTGCGGCAGGTCTCCT
TGTGGAACTCCTCCTTGTTGGGGGCGAAGTGGAAGTAGAGGTAGCCGCCAAGGAGCTCGT
CGGAGCCTTCCCCTGACAGCACCATCTTAACACCGAGCGCCTTGATCTTGCGCGCCATCA
GGAACATCGGCGTGCTCGCACGTATCGTCGTCACGTCGTACGTCTCGTTGTGGTAGATCA
CCTCCTCGATCGCGTCGATACCATCCTAAACAGGACAAAATGACTCATCACTACCTCTGA
ATCTCTGATCCCCCGCTGTCTGTAGTGAGCAGTCTTTTCATTTATTATATGCCGAGATGT
CTTAAGGCTTAAGGTTTCAATCTCAAATTTCTGGGGTTGTCAGTGTGAGCGTTCTGCAAA
TTTATTATGCCAAGCATCAAGATGTCCTGAGGCTTGAGGTTTTATTTGCTTTTCTTTACC
TGGACAGTGAAATGGAACTCGTGATGGATGGTTCCCAGATAGTCAGCAACCTCTCTCGCG
GCCTTCAGGTCAGGTGACCCCTACAATGTTCAGCAACATGTTAGAATCATCAGAATTCCA
TGGTTCTTGAATAAGAAGAAAGAGTAGGACAAAAACATGTGAAGAAAAACAAACCTCCAG
GCCAACGACAAAGGAGTGGAGCTCAGTTCCAAACTTCTTGGCGGCTTCAGTCTCGATGAG
ATGGCGCTTGGTCACAGAGGCGACGAGGGAGGAGTCGAGGCCACCGGAGAGGAGAACGCC
GAAGGGCACGTCAGTCATGAGCCTCTTGATGACGGCCTACAAAACAAAACAGCACACATG
GACATGGTCGATTCCACTGTCAGTCACCATCACCATCACACTACCTACCTACCGTACACA
AAAGATAAAACTCAAGCAATTATCGCGTGGTACTCCGGTCAGCGTGGTATGCACCTTCTC
GAATGCCTCCCTGAGGACGAGGGGCTGGTACGGCGTCGCCGGGACGTGCTCGGCGAACCA
CTGTGGGTTGTACCACCGCCGGAACCCTCCGGCGGCGCTCGAGTACAGGTTCCCCGGAGG
GAAGAGCTCGAACGTTGGGCAGTCCTCGTGGAGCGCCTTCATCTCAGACGCAATCCAGAC
GGAGCCTGTGAAAGCACACAAGACAAATAAGTCCCAGTCCAGACGTGAAGAATCCGTGGT
GACGGACTGACGGTTGAAACTGGCGTACCGTCGCTGCCTCGGCCGAAGTAGAGGGGGTTG
ACGCCGACGGCGTCGCGTGCTGCCATGTACGTCTTGTTGCGGGTGTCGTACAGTACGAAG
GAGAAGACTCCGTCCAGCATGTTGACGAAGTTCTCGCCGTACTCCTCATACTTGAGACAG
CAGCAGGAGCAGAGATGAGGGTCGGCGTCAGTATTCAGTTTTGTTTTCTTGCTTTTTTTT
CTTTACAATTTCGAACCTAAATTCGGCCGCTGGAAACCGGAACAATCTCGCTTACCAGAG
GGATTATGACCTCGCAGTCGCTGCCGGTGGTGAAGGTGTGCTTGGCGGCGAACTGCTTCC
GGATCTTCTTGTGGTTGTAGATTTCTCCATTGGCCTTTTTCATCAACGAACAGTTAGAAA
ACGATAGGCGATGGAGAAGAGAGAAGAGTCTACTCGCACGACGTGGCAAACAGACGACGC
GTACAGGTACAAGGAAGAGCACACATATATGCATACCACGACGACGACGGTACGGTCCTC
GTTGTAGAGGGGCTGGTCACCGGAGAGCGGGGAGACGACAGCGAGCCGCTGCTGCGCCAG
GAAGTTGCCCTCGCACTGGAACAGCCCGGACCAGTCCGGTCCCCTGTGCTTCAGCCTGCA
TCGTCATCATACCGAGCCCAACACGTACGTCAAAATCCACCACAAGCCGTGCCGCGAACA
GAGCAATCATCAGATAACAAGTAAGCGGAGGGGGCTTAGGCTTAAGGAAGAGGAAGATTC
CTGTGCTGGCTTTCAGATCTGCCCTTACTGTTCGATTCTTTCAGGGCACATATATGCAAA
AACGACAAGAAACGCAAACGAGGACAAAACAGGAATTGGACGATCCTGCTTAGGTTCTTT
CTGGCAAGTTGAAGAACAATTGTAAAAGGTATCTACACATATTATCAACGACATTTTTGT
TTTCATGAGGATCGACGCAAGAACCTCAAGATCATGTCAACGGCACCCACGGGCGGGCAT
TAGAGCCGGAGGCTAGGGATTTGAAGAGGGGGCAGGAGATGCATGGGCAGGTGCTTGCCT
GCGGGAGCACGAGAGGACGCGAGCCCTCTTAGCCTGCGACGAGTCGGCGCAGCCGAGGAC
GGCCAGAATCCCACACATGGTGGACGCGGCGACGGACGACGCGGGGTTCGGGGGGCGGAT
GAGGTTGAAGAAGAGGAAGGAGGAGTGAATGATGCTCGTGTTGAGAGAGAGAGAGAGAGA
GAGATGCGGGAATTAGCGGATGCGCGCGCCGTATTTATAGCCGATCCGCGCGGCTCCGGG
GCCTCGCGTCTGCTCTCCTCTCCTCCCTGCGGGGACACGTGGCGGCTGTCGGTTGGGAGG
GTTCCGTGCGCGGCGGGAGTTTATCCCCTCCCGGATGCAGCGTCGCCGAGTCAGCGTGGG
CCCCGCCGCCCGCGTCAGCGCCGGTGGGTGCCGTCGGATCTACGATCCACGGCGGCTGCG
AGGGCCCCGGAGGCCGGATTCACCAACGGCCGGCTGTGCTTCGCTTTGCTTTGCTTTGCC
GCGGTGTGCCTGGTTTAGGCTTTTTTCCCCCTCGTGTGGTGTGATGGGTGATGCCAACGA
CGCCATTATTGGGAGCATCTCGGATGTGATTAACATATTCAGGGGTGTTCATTTCTATTT
CTGAACGCGGACGTTTTCTGATGCTGCCAAGATTCGATGAATCCGCCCCTGGTTGTTTTT
TCACTCCTAGCAATCTTTAAACGATTCTTATGGTGTTTGGTTGTATTGATCATGGATGGC
AAATTTCCTTACCAAGCATGACAAATCTGTCCAGTTCATTTTTGCCAGGATTTTGCCGTG
CTTGCTGAACAAATTTGTCATCCTTTGAACAATAGAAATTGCCATGATAATCTTCGTTTT
GCCATGTCTTCCTAGAGAATGTCAGCACAATAGTGTTTCCCCTAAATCTACTCCTAGCTA
CCTTATTATTTATGTTTATTTTCTTGTTTAGGATAACACACATTTTTATTATCTTAGAAC
TGTAAGCTTTTATGTAGCTTTATTTATGTTGTACATAAACCCCTTATCATCTCACGCTTA
ATAGATGGTGATTGGCATGAAACATACACAATCCCCTTTTACCTCTTCTTTGTCTAGCTA
GATTATATGGAATGGCCAATGAGCAACTTAATTCGGTTCGTGACCAGGTTTACTCATGTC
GTTAGGCCCACCGGAGTGAAAGTGTGAAGGAACCAGAACCAGAAACAGACTGTTCTCTAG
GTGTAAAAAACAAGAGTTTTGATTCTCTCTCGATTTATAAAACTGACAAAAGAAACTGTG
TTATACTCGCGCAATGACGCGGCAACTATTGGTATCCTCTCCTCTTTTGAGTTTTCCCTC
CCGTGAGGTATCAACGCTAGGTGATACATTGCCTGGAACTGAAGACAAATCTAGCCCATA
AAAGAGGGATTGTACTACATTACAAATTTGTCACTTACTTTTTTCGATTTAGGGAGACTA
TGCCTCATCTGAAATCAAATATATTAGGATATCTTCAACCCTCACCTTCAAATCGCACAC
CATATGGACACTCGTGTGGCAGCCGGCCATCCAAAGCAAATTTCAACATAAACTTAAATT
AATTATTTTTATCAAACATGACGGACTTCAGCATAGTAGGAACGTAACATACATAAAACA
AACAACATTTTGACCGTTTAACAAGAAAATAAAAAATAGGAGGCTGGTTTTTAAAGGACG
ACGACCTCGTACGCGTGGCCGGTCGCCCACCATTGCCGTTCGTGTTGTTGTCGTCATCAT
CCTTTCATCGGCGGAAGGGCATGGGACCGCGACACACTTGCCCGGCCGCCGCCAAGAGCT
TGGGGACGATACATTCCACTTGCTCAAGCGTCGTGTCGAAGGTCGTCGTGGCCAATGCTG
ACCTCGACTGTGGTGCCTTGGATGTAGCCTTGGCCCTGTAGGCATCGGCGAGGTGTCGCT
TAGCGACCATTCCTCACCAATTTTGGCAAGCTCCACGCGGAGGCACGGAGGCATCGCACG
GTCGTCTCTACAGTGGTGACGAACCGGACGAGAGCCCATGCCACTACCAGGTTGGGGTCC
TTCCAAACCTAGGTCGACACCTCGTCCAAGTTGGTGAGAGCGGAGCAGCGGGCTGCATAG
CGCCGCTCTTGCTGCACCGCACTGTCCTCGACGGGCACGATATAAGCATCCTTACGTTGT
ACAGTATGATAGAGAGAATGATATTGTGTGGCTAGTGGCGTCTTCCCATAACCATGTATT
TTCCCATAATCTACTCGTTTTACCGTTTCGAATGATGAGTTTAGTCATGTGGAACAAGGT
TGCTTTCATCCTCATTAACCCCTTCTAGAAAGGTGAGTCATCGGGTCTTACGGTAAGCTG
AGTTAGGGTTTTAGATTGCAGGTACTTATTATGCAAAAATGGTGCCCACATTCCTTTGGT
CACAACCATGCACTAAGCAGGCATCTATTATTTACCTCTAAGTTATCAATCCCTAGCCCA
CACTAGTCCTTTGGTCTACAAATAAAGTCCCGCTTTGTTAGCCTGTATTTTGTCTTGATT
TCGTCACTTTGCTACAAAAATCATGACTCATAGAAGTCTAACCTTTTCCGTACCCATAAA
TGCACTTCATAGAAAGACATAAGGAACATGGGCATGCTTGTTAACACTGAGTTTATCAGA
ACCAGCCAACCCCCATAAGACATAAGCACACCCTTCCAGCGGCTCAGTTTTTTTAAATCA
ATCTTCGATACATTTCCTCTCCTTATTCGATAGCTTGCGATGATAAATTGGTATGCCCAG
GTAGTGAAATGGTATAGGACCCAATTCACATCCAAACAATTGTCGATAACTATATTATTG
GTCTTTTCCTCTCCCAAAACAAAACAATTCACTTTAGTTGAAACTGATCTTCAACTCCGA
CAATTGCTCAAAAAGACATAATACTAGCTTCATATTTCTCTCCTTTGCTAGATCATGTTC
CATGAAAAGAATTGTTTCATCAGGGTATTGTAGTATCGACACACCACCATGCACAAGATG
GGGTACGAGTCCACGTACTTTCTCGTCCTCTTTGGCCCAAGTGATAAGGATTGACAACAT
ATGTGACACTATGTTGAAAAAATAGGAGACATTGGGTCCCCTTGCCTTAGACCCTTTTGC
GTCTGGAAGTAGTGACCTATGTCATCATTAGCTTAGTTCCAGCGTGCCTTATTGACCAAA
TGACTCGACCTGCTTCTGCCAGGAATTGTCAAAGCCCTTTGTCGGTGTCAAAACCGGCTG
ATCTCGAGTAGGGGTTCCAAACTATGGATCGTGGATCGAAGGTTAACAAGGGACGAAGGA
GACGATGTTTTACCCAGGTTCAGGCCCTCGTGATGGAGATAAAACCCTACGTCCCGCTCT
ATTTATTATTTGATGAAGTAGTATGAAGTACAATGTTGATCTACCTCGAGATCGAGTGTT
GTGGTCTAAAACGTAATCGTAATGAGCTTAATGTGTCATACGAACTATGGTCCCCTAGTT
TATATAGATACTAGGGGTGGTAGGGTTACACAAAGTCGGTTACAATAAGGAAGGAATATA
TCGATTACTACGTCGCCTTGGATTCGACGCCAAGCCTTCGGAAGAGTCCATCTTGATTCC
AATTCCTCCAATGATGATCGAACATGCCCAGGAGTCCAGCCTATTAGAACAAATAGGTGG
CCCGAGGATCCCTTAGTCCCGGACTCCCTCACTAGCCCCCGAACTGGCCTCCAATGCCGA
AACCTTCAACCTCTAGCTGCTCCATAGAGACCTCGACTTGAGAGGCAAGTTCTTCTCTTC
CTTTAACCGATGATAGTTCGGTTGCCGATGACCTTCCTTCCTTCTAACACACACACACAC
ACACACA